Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	NRP2	Gene	0	3.26	0.90	234.67	100.38	112.35	31.33	75.64
2	357118	Transcript	0	0.00	0.00	2.07	0.75	0.40	0.20	0.92
3	272849	Transcript	0	0.94	0.56	45.62	12.76	12.12	7.09	18.61
4	355117	Transcript	0	0.15	0.00	10.41	2.91	5.48	1.47	2.95
5	360409	Transcript	1	0.95	0.00	36.00	12.00	12.79	4.98	4.18
6	357785	Transcript	0	0.03	0.00	2.96	0.99	1.15	0.36	1.04
7	340626	Transcript	0	0.00	0.00	0.02	1.40	0.00	0.00	0.00
8	IG11_AR2	ActiveIntergenicRegion	0	0.00	0.00	15.80	10.09	0.00	0.00	0.00
9	ER1a	ExonRegion	0	5.44	0.38	313.04	102.90	77.67	30.11	62.89
10	E1_Ab	KnownBoundary	0	24.68	2.65	1182.68	279.12	204.43	114.33	200.14
11	ER1b	ExonRegion	0	11.97	0.79	826.42	245.32	156.82	92.57	158.34
12	E1a_E2a	KnownJunction	0	6.84	0.00	504.96	156.86	135.32	64.78	118.41
13	ER2a	ExonRegion	0	6.26	0.64	461.10	180.49	148.52	64.22	130.53
14	E2_Da	NovelBoundary	0	0.85	0.00	13.34	23.43	2.03	8.63	23.03
15	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	1.68	0.00	0.00	0.00
16	E2a_E4a	KnownJunction	0	2.82	1.37	220.73	132.01	89.15	38.14	77.36
17	ER3a	ExonRegion	0	0.00	0.00	0.04	1.12	0.00	0.00	0.00
18	ER4a	ExonRegion	0	3.27	1.39	265.62	126.85	103.12	35.03	83.48
19	E4a_E5a	KnownJunction	0	2.35	0.00	262.55	159.57	132.76	32.43	85.90
20	E5_Aa	NovelBoundary	1	1.17	0.00	86.39	1.33	1.73	1.13	0.89
21	ER5a	ExonRegion	0	5.07	0.59	376.21	169.84	168.34	48.34	115.52
22	E5a_E6a	KnownJunction	0	7.93	1.63	431.96	184.92	202.84	50.41	131.75
23	ER6a	ExonRegion	0	5.99	1.00	358.60	199.93	168.31	51.54	136.22
24	E6a_E7a	KnownJunction	0	8.01	1.13	305.38	119.28	140.28	38.30	97.67
25	ER7a	ExonRegion	0	6.33	1.84	334.93	168.72	153.40	40.86	116.10
26	E7a_E8a	KnownJunction	0	6.84	1.63	378.50	165.53	194.24	60.38	111.44
27	E8_Aa	NovelBoundary	1	2.92	0.00	148.04	1.68	0.00	0.00	0.72
28	ER8a	ExonRegion	0	3.51	4.07	373.00	177.90	171.43	43.99	130.15
29	E8a_E9a	KnownJunction	0	2.44	6.46	423.13	187.44	165.33	55.42	144.42
30	ER9a	ExonRegion	0	4.03	2.92	377.55	176.89	156.20	33.22	147.49
31	E9a_E10a	KnownJunction	0	1.74	1.39	266.54	150.08	123.91	23.72	100.86
32	ER10a	ExonRegion	0	3.54	0.26	244.59	136.23	103.63	32.07	79.42
33	E10a_E11a	KnownJunction	0	4.94	0.00	365.27	134.67	123.59	52.55	122.82
34	ER11a	ExonRegion	0	3.49	0.85	218.72	115.10	84.16	44.18	80.03
35	E11a_E12a	KnownJunction	0	3.86	1.50	240.99	101.94	104.96	35.97	92.92
36	ER12a	ExonRegion	0	2.82	3.52	228.02	124.65	101.82	38.52	85.36
37	E12a_E13a	KnownJunction	0	1.95	2.02	181.73	95.52	69.67	21.79	76.76
38	ER13a	ExonRegion	0	2.27	1.49	174.66	97.12	66.94	17.89	62.61
39	E13a_E14a	KnownJunction	0	2.52	0.00	126.83	53.69	50.07	8.44	49.76
40	ER14a	ExonRegion	0	1.10	1.03	131.64	76.36	71.71	18.41	50.53
41	E14a_E15a	KnownJunction	0	1.95	2.78	209.07	109.75	130.18	31.86	72.40
42	ER15a	ExonRegion	0	4.79	0.95	298.57	137.32	131.16	44.67	93.37
43	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	E15a_E17a	KnownJunction	0	0.82	2.73	285.45	103.49	91.31	51.91	96.55
45	E15a_E18a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
46	E15a_E19a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
47	E16a_E21a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
48	ER16a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
49	ER17a	ExonRegion	0	1.17	0.00	119.92	34.08	34.53	16.48	33.28
50	E17a_E20b	KnownJunction	0	0.00	0.00	8.84	0.00	3.00	1.53	1.72
51	E17a_E21b	KnownJunction	1	0.95	0.00	36.00	12.00	12.79	4.98	4.18
52	ER18a	ExonRegion	0	0.00	0.00	0.11	0.07	0.00	0.00	0.07
53	ER19a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
54	ER20a	ExonRegion	0	0.00	0.00	6.10	2.18	1.21	0.61	2.70
55	ER20b	ExonRegion	0	1.53	0.78	47.63	20.13	17.94	14.06	31.92
56	E20_Da	KnownBoundary	0	1.60	2.86	62.93	20.97	29.88	16.62	47.57
57	ER20c	ExonRegion	0	1.88	1.11	82.39	25.52	21.25	12.66	35.50
58	E20_Db	NovelBoundary	0	3.61	0.00	86.90	14.76	24.67	14.42	24.66
59	I20	Intron	0	2.13	0.85	68.32	24.17	25.42	10.54	24.43
60	I20_AR1	ActiveIntronRegion	0	2.13	0.85	68.47	24.22	25.47	10.57	24.48
61	I20_AR1	ActiveIntronRegion	0	2.43	0.97	87.45	35.58	36.84	16.74	30.54
62	ER21a	ExonRegion	0	0.13	0.00	11.85	3.95	4.59	1.43	4.16
63	ER21b	ExonRegion	0	1.61	0.00	187.45	53.67	90.41	29.13	49.47
64	E21a_E22b	KnownJunction	0	4.44	0.00	343.18	125.92	164.62	62.71	99.26
65	ER22a	ExonRegion	0	0.46	0.00	31.23	8.73	16.44	4.41	8.84
66	ER22b	ExonRegion	0	2.36	0.30	199.87	88.54	111.04	31.50	72.36
67	E22_Da	KnownBoundary	0	2.69	0.00	141.73	101.16	77.90	34.52	60.19
68	ER22c	ExonRegion	0	2.62	0.75	216.07	91.48	144.00	30.98	75.34