Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	EPHA4	Gene	0	18.03	6.23	5.92	26.19	28.17	16.70	4.76
2	409938	Transcript	0	0.12	0.20	0.01	0.03	0.09	0.00	0.22
3	281821	Transcript	0	14.25	5.20	3.68	17.07	24.32	16.27	4.48
4	409854	Transcript	0	1.79	2.84	0.00	2.73	0.45	4.28	1.18
5	392071	Transcript	0	0	0	0	0	0	0	0
6	ER1a	ExonRegion	0	0.25	0.40	0.01	0.06	0.19	0.01	0.43
7	E1a_E2c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	ER2a	ExonRegion	0	1.15	0.46	0.00	3.43	1.21	2.15	0.51
9	ER2b	ExonRegion	0	2.69	2.43	1.02	9.35	3.24	3.06	2.02
10	ER2c	ExonRegion	0	14.87	10.86	6.54	35.40	7.33	11.63	3.64
11	E2a_E3a	KnownJunction	0	3.45	8.96	2.57	24.57	2.03	8.55	0.00
12	ER3a	ExonRegion	0	27.98	13.77	11.34	43.09	8.57	15.22	6.20
13	E3a_E4a	KnownJunction	0	59.78	14.42	20.95	47.92	24.07	18.06	10.81
14	ER4a	ExonRegion	0	23.42	10.82	15.16	51.48	25.87	28.16	5.62
15	E4_Da	NovelBoundary	1	5.96	2.76	6.51	25.14	1.01	7.29	0.00
16	E4a_E5a	KnownJunction	0	7.23	3.63	5.30	17.47	15.54	18.81	2.22
17	I4_SR1	SilentIntronRegion	1	7.13	1.93	8.19	18.05	2.10	4.34	1.13
18	I4_AR1	ActiveIntronRegion	1	9.62	1.55	10.82	17.41	2.07	4.51	0.43
19	ER5a	ExonRegion	0	9.93	5.65	3.00	23.74	15.83	15.24	2.92
20	E5a_E6a	KnownJunction	0	9.43	4.26	5.56	20.59	7.40	12.84	1.65
21	ER6a	ExonRegion	0	9.93	5.19	4.40	25.87	14.64	16.71	2.39
22	E6a_E7a	KnownJunction	0	15.72	7.01	4.12	15.17	14.45	17.26	2.72
23	ER7a	ExonRegion	0	12.40	9.22	4.46	22.67	16.37	16.47	3.31
24	E7a_E8a	KnownJunction	0	16.42	9.56	7.44	19.78	23.33	10.48	7.77
25	ER8a	ExonRegion	0	14.61	8.52	5.26	15.83	21.29	15.30	4.84
26	E8a_E9a	KnownJunction	0	8.18	4.62	2.43	15.71	14.87	9.97	6.56
27	E8a_E10a	NovelJunction	0	3.05	0.00	2.21	2.87	0.00	8.47	0.00
28	ER9a	ExonRegion	0	4.96	2.33	4.51	11.51	16.62	6.12	3.52
29	E9a_E10a	KnownJunction	0	3.66	2.65	2.37	8.32	23.63	1.29	2.26
30	ER10a	ExonRegion	0	9.39	2.20	5.01	20.31	26.52	11.49	2.24
31	E10a_E11a	KnownJunction	0	13.74	1.16	5.30	31.89	32.23	18.68	2.85
32	ER11a	ExonRegion	0	15.30	3.35	7.27	29.73	18.74	15.87	3.17
33	E11a_E12a	KnownJunction	1	12.50	5.65	6.29	23.11	12.79	5.33	3.40
34	ER12a	ExonRegion	0	14.78	5.92	6.37	21.82	28.31	9.85	3.91
35	E12a_E13a	KnownJunction	1	6.96	9.85	4.60	29.88	25.98	5.17	2.84
36	I12_AR1	ActiveIntronRegion	1	2.90	1.72	1.09	8.81	1.94	1.27	1.57
37	ER13a	ExonRegion	1	16.66	8.37	4.15	26.71	29.86	6.88	2.43
38	E13a_E14a	KnownJunction	0	23.30	5.23	4.47	20.94	26.95	11.07	3.47
39	ER14a	ExonRegion	0	32.71	5.33	8.46	38.41	47.80	12.65	4.87
40	E14a_E15a	KnownJunction	0	25.69	2.89	7.43	39.69	38.59	18.47	5.20
41	ER15a	ExonRegion	0	29.62	5.97	6.99	28.88	47.33	12.32	5.38
42	E15a_E16a	KnownJunction	0	13.19	10.72	5.33	28.58	38.48	17.04	6.06
43	ER16a	ExonRegion	0	13.00	6.71	4.95	29.97	33.65	14.34	6.11
44	E16a_E17a	KnownJunction	0	12.17	6.94	7.08	30.78	30.52	9.97	3.43
45	ER17a	ExonRegion	0	11.05	11.83	4.91	35.81	26.42	16.60	5.88
46	E17a_E18a	KnownJunction	0	16.54	4.12	4.07	34.35	35.85	22.08	4.66
47	E17b_E18a	KnownJunction	0	2.04	3.26	0.00	1.68	0.90	3.99	0.89
48	ER17b	ExonRegion	0	1.54	2.43	0.00	3.78	0.00	4.57	1.47
49	ER18a	ExonRegion	0	22.29	8.58	5.61	33.41	31.66	22.66	5.91
50	E18_Da	KnownBoundary	0	21.66	1.63	4.41	12.46	16.44	12.44	2.82
51	E18_Db	KnownBoundary	0	15.72	1.34	4.24	16.23	38.43	9.54	1.78
52	ER18b	ExonRegion	0	29.58	3.12	7.74	22.80	37.14	16.03	3.90
53	ER18c	ExonRegion	0	28.63	6.71	6.75	29.93	33.81	14.31	5.97
54	E18_Dc	KnownBoundary	0	26.70	5.57	6.55	29.15	22.29	16.56	8.17
55	ER18d	ExonRegion	0	14.19	5.35	4.62	21.84	25.83	17.60	5.99
56	E18d_E19a	KnownJunction	0	22.15	9.93	5.59	22.03	36.05	27.60	6.25
57	ER19a	ExonRegion	0	19.51	5.06	4.50	20.98	34.18	17.74	5.16