Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ICA1L	Gene	0	10.12	5.86	7.68	4.19	12.76	5.60	17.28
2	358299	Transcript	0	2.30	1.10	1.07	1.66	3.97	0.85	3.23
3	392237	Transcript	0	2.81	1.27	1.87	1.04	3.58	1.36	4.35
4	315728	Transcript	0	0.25	0.26	0.66	0.11	2.02	0.37	3.61
5	IG46	Intergenic	0	6.62	1.35	25.93	4.46	23.64	1.38	10.37
6	IG46_SR3	SilentIntergenicRegion	0	4.12	0.67	22.03	3.75	17.63	0.78	6.67
7	IG46_SR2	SilentIntergenicRegion	0	10.99	2.27	45.38	7.75	43.35	2.49	18.55
8	IG46_AR1	ActiveIntergenicRegion	0	5.07	0.97	14.74	2.66	11.49	0.67	5.63
9	ER1a	ExonRegion	0	0.48	0.70	0.61	0.07	0.61	0.05	0.82
10	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.95	0.00	0.80
11	E1a_E5a	KnownJunction	0	4.12	1.50	1.54	3.25	7.33	1.66	5.63
12	ER1b	ExonRegion	0	3.52	3.10	1.17	2.49	4.52	1.23	4.98
13	ER2a	ExonRegion	0	0.01	0.65	0.19	0.00	0.00	0.00	0.64
14	E2a_E3a	KnownJunction	0	0.00	0.00	0.50	0.00	0.00	0.00	1.50
15	ER3a	ExonRegion	0	0.90	0.01	1.43	0.75	1.08	0.00	5.78
16	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	1.18	0.00	4.24
17	E3a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	2.34
18	ER4a	ExonRegion	0	0.00	0.00	0.67	0.00	3.73	1.21	3.59
19	E4a_E5a	KnownJunction	0	0.00	0.00	0.68	0.00	4.43	1.02	2.18
20	ER5a	ExonRegion	1	5.01	8.21	5.35	3.64	7.88	5.58	20.10
21	E5a_E6a	KnownJunction	0	6.54	7.28	8.22	1.68	11.83	10.67	21.24
22	ER6a	ExonRegion	1	6.85	9.79	6.36	3.14	13.76	7.99	26.26
23	E6_Da	KnownBoundary	1	1.99	3.28	5.19	2.84	2.01	0.00	12.60
24	E6a_E7a	KnownJunction	1	2.32	5.23	1.16	1.52	5.67	6.06	13.30
25	ER6b	ExonRegion	1	1.48	0.92	1.93	0.66	2.80	0.00	9.51
26	E6_Db	NovelBoundary	1	130.30	172.68	161.80	107.01	82.23	109.83	326.61
27	I6	Intron	1	2.57	2.65	2.26	0.44	2.54	0.57	8.57
28	I6_SR1	SilentIntronRegion	1	3.19	3.65	2.71	0.00	2.86	0.47	11.43
29	I6_AR1	ActiveIntronRegion	1	2.78	2.98	2.67	1.67	3.07	0.40	10.17
30	ER7a	ExonRegion	1	3.31	3.62	6.97	1.65	9.13	3.65	21.88
31	E7a_E8a	KnownJunction	1	4.99	7.59	2.87	3.25	12.56	3.83	27.06
32	ER8a	ExonRegion	1	4.12	5.21	4.93	5.33	11.41	4.91	35.90
33	E8a_E9a	KnownJunction	1	4.59	4.12	1.60	3.03	13.26	1.21	37.33
34	ER9a	ExonRegion	1	4.57	8.87	5.73	2.62	12.73	2.19	38.01
35	E9_Da	NovelBoundary	1	1.39	2.31	0.73	2.14	0.00	2.63	8.53
36	E9a_E10a	KnownJunction	1	4.72	15.00	6.31	1.68	10.10	1.13	31.70
37	ER10a	ExonRegion	1	9.18	11.92	6.25	6.06	18.97	4.90	44.43
38	E10a_E11a	KnownJunction	1	11.40	12.22	9.94	8.70	15.31	10.48	45.46
39	ER11a	ExonRegion	1	10.69	13.85	8.24	7.96	11.47	5.35	39.28
40	E11a_E12a	KnownJunction	1	7.96	8.28	3.52	1.65	10.86	3.94	37.10
41	ER12a	ExonRegion	1	6.99	9.06	8.65	4.42	14.61	2.73	46.53
42	E12a_E13a	KnownJunction	1	4.56	10.46	12.69	4.61	18.93	2.49	43.07
43	ER13a	ExonRegion	1	8.61	11.05	10.49	4.47	19.47	4.00	40.61
44	E13a_E14a	KnownJunction	1	6.68	9.56	6.78	2.84	13.51	5.87	31.03
45	ER14a	ExonRegion	1	6.02	7.77	5.81	3.02	15.03	7.59	37.93
46	E14a_E15a	KnownJunction	1	5.14	6.80	0.00	2.87	6.50	4.82	25.74
47	ER15a	ExonRegion	1	7.30	5.43	6.56	7.11	26.70	4.84	45.51
48	E15a_E16a	KnownJunction	1	12.75	3.57	9.07	9.56	17.24	5.98	47.09
49	ER16a	ExonRegion	0	23.66	12.97	18.54	9.41	27.08	13.38	32.37
50	E16_Da	KnownBoundary	0	146.02	127.73	130.54	131.26	91.52	94.71	133.28
51	ER16b	ExonRegion	0	8.43	3.81	5.60	3.13	9.79	4.09	9.90