Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	C2orf60	Gene	0	23.42	23.33	31.48	29.79	50.37	18.79	27.82
2	354611	Transcript	0	45.90	38.36	72.91	53.36	85.30	39.21	47.46
3	ER1a	ExonRegion	0	26.67	17.91	38.00	32.89	55.89	27.26	29.43
4	E1a_E2a	KnownJunction	0	8.46	13.58	22.58	19.64	43.41	14.39	18.04
5	E2_Aa	NovelBoundary	1	4.01	1.58	11.02	0.00	0.00	0.00	0.69
6	ER2a	ExonRegion	0	19.07	23.06	28.89	35.91	36.91	20.24	21.27
7	E2a_E3a	KnownJunction	0	14.44	2.10	20.33	5.47	40.20	7.96	12.02
8	I2	Intron	0	9.57	6.74	6.68	3.88	8.06	1.92	6.24
9	I2_AR2	ActiveIntronRegion	0	10.60	5.85	6.54	4.40	7.95	2.62	6.98
10	I2_SR2	SilentIntronRegion	1	11.42	10.93	5.81	4.63	5.55	0.00	10.12
11	I2_AR3	ActiveIntronRegion	1	10.21	10.93	5.90	4.99	5.90	0.00	9.25
12	I2_AR4	ActiveIntronRegion	1	9.99	9.72	5.42	4.53	12.15	0.00	8.59
13	I2_AR5	ActiveIntronRegion	0	9.99	6.25	5.13	3.74	11.34	0.00	7.04
14	I2_AR6	ActiveIntronRegion	0	9.99	6.07	4.74	2.49	10.64	0.00	6.75
15	I2_SR3	SilentIntronRegion	0	11.25	8.60	7.26	4.63	9.54	1.96	7.04
16	E3_Aa	NovelBoundary	0	14.32	1.63	11.57	3.20	8.81	2.52	5.04
17	ER3a	ExonRegion	0	29.43	24.35	61.16	33.81	87.50	30.56	29.21
18	E3a_E4a	KnownJunction	0	38.89	39.64	73.72	56.76	112.36	44.73	41.20
19	ER4a	ExonRegion	0	57.68	44.81	88.56	62.07	92.23	42.58	54.72
20	E4a_E5a	KnownJunction	0	69.51	46.40	87.40	54.86	79.00	30.85	51.84
21	ER5a	ExonRegion	0	76.41	59.70	121.03	83.94	100.71	55.45	68.85
22	E5_Da	NovelBoundary	0	11.40	7.15	14.37	4.36	9.57	8.36	11.05
23	E5a_E6a	KnownJunction	0	56.93	49.05	92.90	68.78	99.80	39.61	65.92
24	E5a_E7a	NovelJunction	1	13.47	12.14	9.74	13.92	4.68	16.75	3.00
25	I5_AR1	ActiveIntronRegion	0	10.07	4.28	7.87	2.58	8.07	3.13	6.92
26	I5_SR2	SilentIntronRegion	0	9.43	3.84	8.64	5.06	10.37	2.96	8.22
27	E6_Aa	NovelBoundary	0	8.90	4.99	13.62	5.63	3.04	1.47	5.40
28	ER6a	ExonRegion	0	51.76	56.33	98.83	79.17	116.96	50.14	76.89
29	E6a_E7a	KnownJunction	0	56.68	57.61	115.75	65.64	136.43	72.04	68.96
30	ER7a	ExonRegion	0	79.47	56.94	116.39	94.99	120.91	67.73	76.95
31	E7_Da	NovelBoundary	0	5.77	2.23	3.22	0.00	6.94	1.26	9.03
32	E7a_E8a	KnownJunction	0	83.82	63.31	104.14	81.71	112.22	69.55	72.45
33	I7_AR3	ActiveIntronRegion	1	8.12	1.37	1.86	0.70	10.22	0.00	8.81
34	I7_SR2	SilentIntronRegion	1	8.59	0.43	1.98	1.25	8.56	0.00	8.46
35	I7_AR4	ActiveIntronRegion	1	10.40	0.65	5.51	0.56	9.05	0.00	8.55
36	I7_SR3	SilentIntronRegion	1	10.33	5.08	5.34	0.59	12.51	0.68	9.20
37	E8_Aa	NovelBoundary	0	10.25	3.26	4.73	1.44	32.80	1.50	8.61
38	ER8a	ExonRegion	0	19.33	20.55	23.96	24.69	44.91	15.03	24.15
39	IG46	Intergenic	0	27.04	14.41	27.41	10.45	75.16	29.57	35.92
40	IG46_AR1	ActiveIntergenicRegion	0	39.52	21.28	39.67	14.85	108.98	43.28	51.62