Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	GLS	Gene	0	127.52	170.09	173.85	363.71	66.65	238.06	179.92
2	338435	Transcript	0	0	0	0	0	0	0	0
3	320717	Transcript	0	56.42	40.22	70.75	113.89	15.63	101.53	125.28
4	409626	Transcript	1	132.42	52.47	99.76	55.22	10.56	84.60	28.15
5	409428	Transcript	0	0.70	0.00	0.68	0.00	0.00	0.00	0.00
6	409215	Transcript	0	114.98	70.83	137.07	150.54	55.56	137.20	86.27
7	ER1a	ExonRegion	0	24.35	132.63	30.86	245.52	10.55	150.28	37.35
8	E1a_E2a	KnownJunction	0	155.40	354.22	230.89	627.51	68.77	383.56	172.74
9	I1	Intron	0	30.15	9.90	29.01	6.64	2.52	6.28	9.51
10	I1_SR1	SilentIntronRegion	0	27.72	9.99	28.19	7.12	2.26	5.73	9.64
11	I1_AR2	ActiveIntronRegion	0	34.79	16.94	39.71	8.89	3.09	7.95	9.95
12	I1_SR2	SilentIntronRegion	0	52.87	12.44	40.08	11.57	3.35	14.41	11.03
13	I1_AR3	ActiveIntronRegion	0	25.71	9.55	21.29	6.47	1.90	6.88	7.84
14	I1_SR3	SilentIntronRegion	0	34.48	8.57	30.80	4.52	3.12	6.02	9.98
15	E2_Aa	NovelBoundary	1	42.28	5.28	46.78	5.55	5.42	13.51	8.76
16	ER2a	ExonRegion	0	193.08	440.82	317.00	796.18	106.89	546.34	241.83
17	E2a_E3a	KnownJunction	0	217.60	422.79	371.49	859.47	108.86	546.88	235.16
18	I2	Intron	0	31.70	6.75	37.17	7.98	4.18	5.51	13.55
19	I2_SR1	SilentIntronRegion	0	31.86	6.78	37.36	8.03	4.20	5.54	13.63
20	E3_Aa	NovelBoundary	1	37.27	5.25	45.67	9.70	7.79	2.60	12.33
21	ER3a	ExonRegion	0	259.31	509.58	424.30	1023.86	142.54	664.78	332.56
22	E3_Da	NovelBoundary	0	162.64	126.52	188.63	153.36	7.12	108.57	82.41
23	E3a_E4a	KnownJunction	0	139.84	412.17	304.22	952.50	161.95	571.67	305.75
24	I3	Intron	0	157.24	58.54	145.81	75.95	11.46	53.54	40.61
25	I3_AR1	ActiveIntronRegion	0	195.36	94.68	172.83	138.46	15.53	79.96	58.89
26	I3_SR1	SilentIntronRegion	0	146.70	63.45	136.97	78.78	11.21	47.14	35.96
27	I3_AR2	ActiveIntronRegion	0	147.57	44.60	148.11	53.58	9.15	43.22	34.50
28	I3_SR2	SilentIntronRegion	0	127.67	44.54	121.55	53.30	10.05	46.56	29.25
29	I3_AR3	ActiveIntronRegion	0	116.54	26.68	127.05	23.88	6.20	28.85	26.61
30	I3_SR3	SilentIntronRegion	0	199.96	39.10	152.25	36.41	14.33	46.61	43.81
31	E4_Aa	NovelBoundary	1	139.09	31.68	108.84	43.16	9.80	51.67	37.71
32	ER4a	ExonRegion	0	321.90	564.89	564.42	1187.04	213.89	693.90	446.47
33	E4a_E5a	KnownJunction	0	429.60	580.60	552.74	1369.08	324.51	723.89	483.34
34	E5_Aa	NovelBoundary	1	32.26	8.14	46.33	5.28	0.00	14.82	3.90
35	ER5a	ExonRegion	0	416.91	609.24	558.75	1222.83	226.14	720.92	492.14
36	E5_Da	NovelBoundary	1	47.90	2.78	40.61	7.42	0.00	2.14	5.40
37	E5a_E6a	KnownJunction	0	351.16	618.38	547.55	1186.83	199.82	674.07	431.42
38	I5	Intron	1	34.19	6.17	40.98	4.94	0.24	7.55	3.65
39	I5_AR1	ActiveIntronRegion	1	36.73	4.21	46.05	5.60	0.45	4.88	3.37
40	I5_SR1	SilentIntronRegion	1	34.08	6.52	41.13	4.70	0.22	8.38	3.78
41	I5_AR2	ActiveIntronRegion	1	29.79	7.00	27.79	6.01	0.00	4.75	2.93
42	E6_Aa	NovelBoundary	1	43.76	10.90	45.08	9.13	1.18	13.37	2.34
43	ER6a	ExonRegion	0	463.23	666.27	588.71	1246.22	229.84	704.98	447.84
44	E6_Da	NovelBoundary	1	107.00	27.69	66.61	41.61	1.18	21.92	1.40
45	E6a_E7a	KnownJunction	0	437.01	522.70	590.59	1228.69	264.62	719.01	424.31
46	I6_AR1	ActiveIntronRegion	1	98.48	21.05	62.36	20.86	1.36	22.87	2.20
47	I6_SR1	SilentIntronRegion	1	35.23	10.51	32.04	9.98	0.50	11.14	3.37
48	ER7a	ExonRegion	0	422.01	452.01	570.63	1165.49	209.35	669.02	385.23
49	E7a_E8a	KnownJunction	0	288.99	279.00	343.13	816.80	146.69	450.96	230.29
50	I7	Intron	1	26.84	19.31	20.87	6.80	16.44	11.16	39.23
51	I7_SR2	SilentIntronRegion	1	33.79	26.58	20.79	8.80	13.27	15.94	37.30
52	I7_AR2	ActiveIntronRegion	1	59.75	39.96	39.08	50.08	28.18	45.21	50.05
53	I7_SR3	SilentIntronRegion	1	28.62	18.35	22.54	4.03	20.34	6.72	35.84
54	I7_AR3	ActiveIntronRegion	1	34.88	18.46	26.68	5.86	24.08	11.52	39.92
55	I7_AR5	ActiveIntronRegion	1	17.84	18.18	19.68	5.81	16.62	8.23	47.31
56	I7_AR6	ActiveIntronRegion	1	21.80	15.31	21.37	5.17	20.84	9.60	49.85
57	ER8a	ExonRegion	0	424.99	413.82	503.30	987.82	206.93	556.45	329.10
58	E8a_E9a	KnownJunction	0	396.92	418.85	436.30	775.75	250.12	441.69	302.67
59	ER9a	ExonRegion	0	419.67	464.92	533.54	1008.05	259.54	570.42	417.36
60	E9a_E10a	KnownJunction	0	360.10	421.84	495.83	995.49	271.19	544.92	434.67
61	E9a_E12b	NovelJunction	1	12.43	3.05	3.02	18.23	0.00	11.50	0.00
62	ER10a	ExonRegion	0	351.84	415.44	465.12	895.00	272.23	482.00	434.69
63	E10a_E11a	KnownJunction	0	322.33	338.56	364.79	712.82	275.41	382.65	379.88
64	E10a_E12b	NovelJunction	1	2.35	8.46	10.52	150.55	0.00	56.23	0.00
65	ER11a	ExonRegion	0	268.61	392.30	363.68	813.66	258.18	405.97	442.60
66	E11_Da	NovelBoundary	1	87.25	34.68	56.02	30.45	9.71	49.90	12.58
67	E11a_E12b	KnownJunction	0	165.93	379.15	270.18	718.94	217.99	361.15	371.50
68	E11a_E14a	NovelJunction	1	2.54	0.00	9.13	11.51	0.95	12.86	3.61
69	I11	Intron	1	131.35	47.42	94.38	47.87	8.36	81.15	22.31
70	I11_AR1	ActiveIntronRegion	0	109.93	57.22	84.42	50.75	8.10	80.97	22.47
71	I11_SR2	SilentIntronRegion	0	104.54	54.08	82.30	56.14	7.99	77.81	25.72
72	I11_AR2	ActiveIntronRegion	1	165.52	39.90	111.76	44.32	9.13	86.97	21.67
73	E12_Aa	NovelBoundary	1	136.79	64.37	90.56	47.63	8.30	100.10	20.49
74	ER12a	ExonRegion	1	132.42	52.47	99.76	55.22	10.56	84.60	28.15
75	E12_Ab	KnownBoundary	1	143.25	58.14	99.60	93.87	9.13	155.25	29.11
76	ER12b	ExonRegion	0	283.68	543.57	404.09	1099.42	251.29	626.51	485.33
77	E12_Da	NovelBoundary	1	34.95	16.68	34.20	14.03	1.13	10.16	6.33
78	E12a_E14a	KnownJunction	0	251.78	454.02	345.10	1048.89	261.42	648.66	425.61
79	ER13a	ExonRegion	0	0.70	0.00	0.68	0.00	0.00	0.00	0.00
80	ER13b	ExonRegion	0	1.97	0.07	0.57	1.21	0.04	0.07	0.35
81	E13a_E14a	KnownJunction	0	0.82	0.00	0.00	1.65	0.00	0.00	0.67
82	I13_SR1	SilentIntronRegion	0	27.31	14.53	29.23	14.89	3.01	21.45	6.55
83	ER14a	ExonRegion	0	249.88	448.37	368.13	1013.21	242.89	600.98	416.19
84	E14_Da	NovelBoundary	1	65.19	21.57	50.57	31.37	5.35	29.40	9.53
85	E14a_E15a	KnownJunction	0	265.40	402.01	383.03	965.96	234.10	609.83	421.87
86	E14a_E16a	NovelJunction	0	5.47	10.09	9.92	29.10	0.00	19.30	0.59
87	I14	Intron	1	44.93	11.05	37.56	9.29	1.62	12.02	4.50
88	I14_SR1	SilentIntronRegion	1	45.06	11.08	37.68	9.32	1.62	12.06	4.51
89	E15_Aa	NovelBoundary	1	62.69	14.24	46.55	10.29	1.13	16.59	8.37
90	ER15a	ExonRegion	0	256.58	375.40	378.79	846.16	196.87	522.93	381.45
91	E15_Da	NovelBoundary	1	43.39	12.61	73.50	4.82	0.00	15.57	6.55
92	E15a_E16a	KnownJunction	0	207.41	303.83	284.39	609.79	155.15	396.56	219.96
93	E15a_E17a	KnownJunction	1	34.40	53.09	103.57	122.61	10.77	90.80	106.93
94	I15	Intron	1	61.97	19.07	51.70	16.60	2.49	21.54	6.94
95	I15_AR1	ActiveIntronRegion	1	63.94	20.04	54.40	16.45	2.35	21.45	7.10
96	I15_AR2	ActiveIntronRegion	0	40.47	19.35	50.70	17.87	1.59	24.47	9.12
97	I15_SR1	SilentIntronRegion	1	51.82	10.21	44.15	11.28	2.51	20.78	6.55
98	I15_AR3	ActiveIntronRegion	1	64.63	20.95	49.73	19.16	2.87	21.93	6.59
99	E16_Aa	NovelBoundary	1	66.26	71.72	73.29	210.99	16.62	94.87	23.35
100	ER16a	ExonRegion	0	230.03	296.86	321.59	657.00	146.51	428.78	253.09
101	E16_Da	KnownBoundary	0	279.72	286.75	354.29	555.15	137.53	378.76	197.63
102	ER16b	ExonRegion	0	219.80	195.06	318.74	400.34	106.66	305.29	192.98
103	E16_Db	KnownBoundary	0	194.09	131.25	222.32	267.77	63.49	230.34	147.67
104	ER16c	ExonRegion	0	114.98	70.83	137.07	150.54	55.56	137.20	86.27
105	E16_Dc	NovelBoundary	0	182.54	112.99	296.32	213.94	51.15	227.99	144.66
106	I16	Intron	0	48.85	36.23	47.36	68.81	21.77	66.63	33.40
107	I16_AR1	ActiveIntronRegion	0	266.35	215.91	279.83	440.34	146.67	408.64	173.13
108	ER17a	ExonRegion	1	36.51	56.90	102.63	121.68	10.41	103.91	118.54
109	E17a_E18a	KnownJunction	1	36.13	50.28	81.38	115.84	11.94	90.07	120.43
110	ER18a	ExonRegion	1	31.84	50.28	78.34	118.25	9.32	85.87	111.08
111	E18a_E19a	KnownJunction	1	23.47	33.42	65.23	97.42	6.43	77.53	90.13
112	ER19a	ExonRegion	1	28.98	43.28	79.31	104.16	10.55	90.15	104.38
113	E19a_E20a	KnownJunction	0	39.32	48.81	82.46	115.54	15.95	98.41	113.78
114	ER20a	ExonRegion	0	70.21	51.40	108.39	160.34	16.53	113.18	142.35
115	E20_Da	KnownBoundary	0	91.58	46.37	96.45	149.11	18.51	81.82	138.33
116	ER20b	ExonRegion	0	56.42	40.22	70.75	113.89	15.63	101.53	125.28
117	IG12	Intergenic	0	18.01	5.75	13.49	6.34	3.57	6.95	18.97
118	IG12_SR1	SilentIntergenicRegion	0	9.58	4.16	6.11	3.69	4.16	4.81	14.32
119	IG12_AR1	ActiveIntergenicRegion	0	15.48	6.07	10.35	3.74	0.93	4.90	21.39
120	IG12_AR2	ActiveIntergenicRegion	0	13.19	6.07	10.50	5.40	1.35	8.58	18.89
121	IG12_AR3	ActiveIntergenicRegion	0	13.15	6.07	10.99	5.82	2.07	8.99	19.71
122	IG12_AR4	ActiveIntergenicRegion	0	14.22	6.07	8.92	4.99	2.43	8.79	23.72
123	IG12_AR5	ActiveIntergenicRegion	0	11.86	6.77	8.81	6.06	2.43	7.36	22.36
124	IG12_AR6	ActiveIntergenicRegion	0	10.21	4.86	9.48	8.37	3.59	7.36	17.92
125	IG12_AR7	ActiveIntergenicRegion	0	10.60	3.64	10.16	8.73	5.10	9.56	20.84
126	IG12_AR8	ActiveIntergenicRegion	0	8.64	5.45	10.00	7.69	3.13	7.11	17.00
127	IG12_AR10	ActiveIntergenicRegion	0	24.89	6.36	13.83	5.78	3.35	6.83	16.89
128	IG12_SR3	SilentIntergenicRegion	0	23.22	6.84	12.86	3.89	3.92	7.12	21.17
129	IG12_AR11	ActiveIntergenicRegion	0	20.02	7.98	13.07	7.84	3.76	8.00	19.83
130	IG12_SR4	SilentIntergenicRegion	0	19.73	3.33	21.36	5.68	4.09	6.49	24.87
131	IG12_AR12	ActiveIntergenicRegion	0	9.10	1.61	8.46	3.61	3.69	4.03	13.62