Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CLK1	Gene	0	911.74	1110.22	895.11	1139.40	88.22	1615.57	68.42
2	321356	Transcript	0	22.69	27.78	35.08	21.88	2.48	58.32	4.07
3	357369	Transcript	0	0.88	0.69	1.23	0.42	0.04	0.29	0.13
4	409403	Transcript	1	47.77	29.23	30.11	52.11	2.41	130.19	1.95
5	409769	Transcript	0	126.47	105.39	101.55	89.63	8.54	125.36	5.82
6	ER1a	ExonRegion	0	347.96	862.68	400.67	886.47	67.28	952.36	52.61
7	E1a_E2a	NovelJunction	0	6.99	16.52	3.94	34.65	0.00	23.10	2.45
8	E1a_E3a	KnownJunction	0	160.09	356.19	149.52	349.53	7.31	476.63	20.08
9	ER2a	ExonRegion	0	33.26	39.26	21.43	52.63	1.71	94.50	1.79
10	E2a_E3a	KnownJunction	1	62.27	19.20	38.80	51.58	3.11	165.89	2.11
11	ER3a	ExonRegion	0	616.31	1399.54	706.59	1365.58	54.78	1865.45	75.35
12	E3a_E4a	KnownJunction	0	971.24	1544.71	1150.03	1667.16	164.14	2511.62	115.47
13	ER4a	ExonRegion	0	877.27	1779.67	1062.87	1667.93	116.14	2652.76	84.03
14	E4_Da	NovelBoundary	1	257.54	161.39	322.67	96.34	5.12	57.81	33.38
15	E4a_E5a	KnownJunction	1	630.48	1032.97	728.32	1266.92	35.02	2096.84	23.65
16	E4a_E6a	NovelJunction	1	473.38	669.50	259.10	208.11	90.04	312.83	51.42
17	I4	Intron	1	263.87	116.47	352.18	67.84	7.83	50.82	33.45
18	I4_AR1	ActiveIntronRegion	1	264.35	116.68	352.83	67.97	7.85	50.91	33.51
19	E5_Aa	NovelBoundary	1	222.99	163.46	226.81	79.62	5.58	93.00	30.02
20	ER5a	ExonRegion	0	831.74	1089.91	910.27	1412.70	47.66	2209.58	48.58
21	E5_Da	NovelBoundary	0	314.77	126.37	313.43	80.14	5.51	81.42	26.90
22	E5a_E6a	KnownJunction	0	802.42	1119.06	895.33	1525.50	36.42	2569.32	47.80
23	I5	Intron	1	366.70	103.36	304.86	81.40	9.94	52.10	26.61
24	I5_AR1	ActiveIntronRegion	1	368.75	103.94	306.53	81.87	9.99	52.40	26.76
25	E6_Aa	NovelBoundary	0	627.26	181.01	471.61	138.11	16.02	102.00	53.64
26	ER6a	ExonRegion	0	1174.21	1702.78	1153.34	1844.89	108.34	2836.77	73.42
27	E6_Da	NovelBoundary	0	280.11	87.06	187.52	58.49	4.59	68.37	15.97
28	E6a_E7b	KnownJunction	0	1749.12	1967.28	1463.10	1864.76	160.77	2321.72	80.86
29	I6_AR1	ActiveIntronRegion	1	189.67	77.81	158.34	35.74	6.50	40.52	13.49
30	I6_AR2	ActiveIntronRegion	0	197.81	89.14	152.00	48.36	6.30	37.70	11.07
31	ER7a	ExonRegion	0	126.47	105.39	101.55	89.63	8.54	125.36	5.82
32	ER7b	ExonRegion	0	2240.83	2171.88	1898.62	1966.07	196.46	2903.51	156.92
33	E7a_E8a	KnownJunction	0	1289.45	1401.16	1231.60	1487.49	157.06	1752.60	74.62
34	E7a_E9a	NovelJunction	1	156.13	92.76	61.25	59.90	9.66	52.69	2.78
35	ER8a	ExonRegion	0	2081.42	1612.85	1777.16	1675.99	178.99	2094.10	101.41
36	E8a_E9a	KnownJunction	0	2034.10	1706.30	1800.68	1885.54	146.48	2295.88	107.07
37	ER9a	ExonRegion	0	2295.69	1828.17	1908.37	1945.85	198.96	2475.28	116.51
38	E9a_E10a	KnownJunction	0	2182.41	1659.67	1843.41	1988.97	224.44	2347.34	109.46
39	ER10a	ExonRegion	0	1954.22	1670.44	1759.26	1785.03	198.12	2230.06	129.42
40	E10a_E11a	KnownJunction	0	2049.59	1626.57	1784.05	1687.67	162.61	2086.28	124.22
41	ER11a	ExonRegion	0	1552.58	1823.59	1476.76	1839.83	151.86	2377.03	135.08
42	E11a_E12a	KnownJunction	0	1078.77	1660.49	1125.23	1759.00	136.08	2221.73	98.83
43	E11a_E13a	NovelJunction	0	40.52	56.56	23.28	39.91	1.15	83.29	3.78
44	ER12a	ExonRegion	0	1405.43	1670.26	1477.91	1735.46	156.84	2312.48	123.81
45	E12a_E13a	KnownJunction	0	1630.46	1611.81	1618.01	1784.54	197.47	2334.53	120.00
46	ER13a	ExonRegion	0	1192.65	1472.11	1258.50	1572.39	143.45	2012.87	110.84
47	E13a_E14a	KnownJunction	0	968.35	1338.21	1077.09	1383.95	106.39	1794.19	98.94
48	ER14a	ExonRegion	0	825.13	1157.61	959.61	1256.12	66.64	2016.51	71.11
49	E14_Da	KnownBoundary	1	281.08	627.97	348.18	662.54	14.52	1328.38	29.67
50	ER14b	ExonRegion	0	199.97	449.15	283.94	449.03	11.92	969.51	22.12
51	E14_Db	KnownBoundary	0	144.42	139.87	229.03	167.15	19.32	368.68	14.65
52	ER14c	ExonRegion	0	22.69	27.78	35.08	21.88	2.48	58.32	4.07
53	ER15a	ExonRegion	0	0.88	0.69	1.23	0.42	0.04	0.29	0.13