Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SAP130	Gene	0	66.21	104.93	77.55	133.64	276.94	166.08	122.97
2	259234	Transcript	0	6.36	15.11	7.46	12.97	9.37	12.97	7.23
3	259235	Transcript	0	0	0	0	0	0	0	0
4	357702	Transcript	0	13.92	14.79	23.06	35.62	93.64	41.14	44.86
5	409388	Transcript	0	1.23	2.43	0.54	1.75	4.37	2.70	0.94
6	ER1a	ExonRegion	0	7.20	14.18	8.56	13.72	12.41	13.27	7.46
7	E1a_E3a	KnownJunction	0	7.41	25.51	5.95	14.22	2.10	19.27	5.40
8	E1a_E4a	NovelJunction	0	1.74	8.77	0.00	4.77	0.00	3.43	0.00
9	ER2a	ExonRegion	0	0.30	0.65	0.57	2.82	0.71	1.01	0.76
10	E2a_E3a	KnownJunction	0	3.09	3.57	7.08	14.33	8.02	4.82	7.08
11	ER3a	ExonRegion	0	20.54	68.30	48.35	80.60	66.48	96.18	45.21
12	E3a_E4a	KnownJunction	1	24.58	81.60	63.63	105.66	134.01	138.18	74.44
13	ER4a	ExonRegion	0	33.28	157.64	65.08	131.00	141.18	207.68	88.33
14	E4a_E5a	KnownJunction	0	55.54	204.79	95.46	170.81	148.37	216.81	125.92
15	ER5a	ExonRegion	0	63.00	181.19	86.20	180.09	245.41	250.57	129.08
16	E5a_E6a	KnownJunction	0	85.89	196.17	123.44	200.23	326.20	264.30	137.98
17	ER6a	ExonRegion	0	83.18	215.13	117.94	206.75	272.53	307.12	184.98
18	E6a_E7a	KnownJunction	0	69.88	178.88	91.70	203.70	211.46	272.45	148.39
19	E6a_E8a	NovelJunction	1	0.92	1.21	3.31	6.23	0.00	13.83	0.00
20	ER7a	ExonRegion	0	76.33	194.46	113.10	198.69	362.06	287.24	200.48
21	E7a_E8a	KnownJunction	0	84.55	198.80	119.45	204.70	394.90	315.14	223.31
22	ER8a	ExonRegion	0	75.00	217.35	106.52	236.47	397.49	284.44	222.21
23	E8a_E9a	KnownJunction	0	81.90	206.44	109.90	238.65	453.50	262.58	232.76
24	E8a_E9b	KnownJunction	0	13.92	14.79	23.06	35.62	93.64	41.14	44.86
25	E9_Ab	NovelBoundary	1	36.58	0.00	42.06	0.00	0.99	0.00	2.84
26	ER9a	ExonRegion	0	86.26	208.96	111.60	246.28	487.53	275.85	253.65
27	ER9b	ExonRegion	0	120.34	229.62	145.21	280.96	599.09	331.39	307.24
28	E9a_E10a	KnownJunction	0	87.77	232.69	117.22	292.69	597.35	344.56	258.41
29	ER10a	ExonRegion	0	95.59	197.21	105.21	247.93	431.66	324.75	259.84
30	E10a_E11a	KnownJunction	0	148.07	217.11	142.30	300.85	691.22	310.69	350.72
31	ER11a	ExonRegion	0	154.13	186.37	172.04	240.88	719.12	256.09	291.22
32	E11a_E12a	KnownJunction	0	162.08	135.69	156.54	190.59	394.92	199.50	254.88
33	ER12a	ExonRegion	0	98.69	128.87	119.45	156.34	376.93	159.52	166.83
34	E12a_E13a	KnownJunction	0	139.28	118.69	168.05	198.47	407.02	197.92	223.76
35	E12a_E14a	NovelJunction	1	1.99	1.05	2.47	6.77	0.00	11.28	0.59
36	ER13a	ExonRegion	0	93.41	130.09	126.01	184.85	397.03	192.77	165.00
37	E13a_E14a	KnownJunction	0	50.05	108.82	81.97	155.99	168.45	159.59	110.22
38	ER14a	ExonRegion	0	58.82	103.82	83.55	160.22	223.07	179.68	114.02
39	E14a_E15a	KnownJunction	0	61.09	98.28	72.15	134.18	174.99	162.92	111.11
40	E14a_E15b	KnownJunction	0	4.47	5.65	7.89	10.97	13.60	6.38	8.81
41	ER15a	ExonRegion	0	54.17	101.44	73.33	134.98	204.08	171.03	106.92
42	ER15b	ExonRegion	0	75.42	119.66	78.85	168.65	287.69	177.25	135.95
43	E15a_E16a	KnownJunction	0	89.78	81.39	100.74	130.34	429.68	160.99	171.40
44	E15a_E17a	KnownJunction	0	31.56	48.63	23.16	67.24	62.98	58.45	39.51
45	ER16a	ExonRegion	0	75.20	105.22	97.90	142.62	321.66	149.84	189.36
46	E16a_E17a	KnownJunction	0	50.09	96.23	66.66	129.66	217.71	117.44	128.72
47	ER17a	ExonRegion	0	74.19	112.61	75.42	159.26	331.68	157.15	156.45
48	E17a_E18a	KnownJunction	0	41.82	74.45	58.31	116.79	363.43	117.30	117.70
49	ER18a	ExonRegion	0	59.87	87.52	79.92	139.51	341.30	143.87	145.89
50	E18a_E19a	KnownJunction	0	75.37	96.55	97.60	163.98	614.29	193.07	151.80
51	ER19a	ExonRegion	0	70.93	68.03	86.44	110.73	444.28	121.36	125.49
52	E19a_E20a	KnownJunction	0	66.33	60.03	58.96	87.69	246.69	95.92	88.55
53	E19a_E21a	NovelJunction	1	5.01	0.00	2.95	11.84	3.04	8.52	0.69
54	ER20a	ExonRegion	0	74.31	54.84	63.48	88.93	310.98	102.43	89.82
55	E20a_E21a	KnownJunction	0	51.44	37.52	54.29	66.59	300.10	64.21	76.49
56	ER21a	ExonRegion	0	125.67	64.32	98.92	86.88	462.70	118.22	114.04
57	E21a_E22a	KnownJunction	0	144.84	62.34	108.86	81.11	230.55	116.36	98.63
58	ER22a	ExonRegion	0	62.27	54.25	57.00	84.28	206.73	137.24	64.61
59	ER22b	ExonRegion	0	6.92	7.29	3.39	3.74	20.25	8.58	4.72
60	ER22c	ExonRegion	0	1.23	2.43	0.54	1.75	4.37	2.70	0.94
61	IG28_AR4	ActiveIntergenicRegion	0	4.63	6.24	1.80	8.44	0.91	78.12	0.70
62	IG28_SR2	SilentIntergenicRegion	0	1.74	3.50	1.31	4.45	1.20	40.06	0.56
63	IG28_AR3	ActiveIntergenicRegion	0	6.14	2.76	4.24	5.25	12.65	11.83	1.41
64	IG28_AR1	ActiveIntergenicRegion	0	5.93	4.94	4.48	3.40	9.16	9.18	2.96