Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AC013272.5	Gene	0	6.95	12.05	10.77	15.00	4.22	9.51	1.48
2	359548	Transcript	0	0.42	3.34	0.00	0.00	0.00	0.00	0.00
3	335448	Transcript	0	6.45	16.95	6.64	13.14	3.67	4.90	3.47
4	398024	Transcript	0	0.00	0.00	0.85	1.41	0.00	0.00	0.00
5	377137	Transcript	0	0.00	0.00	2.93	2.74	0.00	1.18	0.00
6	ER1a	ExonRegion	0	0.42	3.34	0.00	0.00	0.00	0.00	0.00
7	E1_Ab	KnownBoundary	1	1.64	9.59	2.00	1.46	0.00	0.00	0.00
8	ER1b	ExonRegion	0	0.70	3.44	1.87	4.76	0.38	1.57	0.00
9	E1a_E2a	KnownJunction	0	0.00	0.00	4.73	4.39	0.00	2.65	0.00
10	I1	Intron	0	5.37	7.52	0.18	1.06	0.04	1.20	0.02
11	I1_AR1	ActiveIntronRegion	1	11.50	17.59	0.26	2.15	0.19	2.49	0.00
12	I1_SR2	SilentIntronRegion	1	6.04	15.99	0.97	2.34	0.00	2.39	0.00
13	E2_Aa	NovelBoundary	1	4.17	14.34	0.50	3.36	0.00	0.00	0.00
14	ER2a	ExonRegion	0	5.13	11.96	6.17	10.12	0.00	3.51	0.00
15	E2_Da	NovelBoundary	0	5.24	10.40	0.73	2.33	0.00	1.63	0.00
16	E2a_E3a	KnownJunction	1	3.94	0.00	8.12	12.30	0.00	7.80	0.00
17	I2	Intron	1	3.25	12.83	0.34	1.90	0.00	0.62	0.34
18	I2_SR1	SilentIntronRegion	1	3.29	12.99	0.35	1.92	0.00	0.63	0.35
19	E3_Aa	NovelBoundary	1	6.76	15.47	0.00	3.31	0.00	1.53	0.00
20	ER3a	ExonRegion	0	9.83	13.29	16.54	17.05	1.95	14.10	0.00
21	E3_Da	NovelBoundary	1	1.84	10.27	0.78	2.49	0.88	0.00	0.62
22	E3a_E4a	KnownJunction	1	6.18	1.63	11.88	18.77	2.07	6.16	0.00
23	I3	Intron	1	7.83	15.17	1.49	2.85	0.12	0.27	0.00
24	I3_SR1	SilentIntronRegion	1	7.85	15.21	1.50	2.86	0.12	0.27	0.00
25	E4_Aa	NovelBoundary	1	8.14	16.16	0.00	2.38	1.04	0.00	0.00
26	ER4a	ExonRegion	1	5.03	2.96	10.91	18.77	1.23	6.76	0.00
27	E4_Da	NovelBoundary	1	6.31	14.48	0.00	0.00	0.00	1.63	0.00
28	E4a_E5a	KnownJunction	1	8.86	0.00	12.90	20.24	1.18	6.14	0.00
29	I4	Intron	1	4.60	10.74	0.25	1.15	0.10	1.81	0.00
30	I4_SR1	SilentIntronRegion	1	5.18	11.85	0.30	1.18	0.12	2.02	0.00
31	E5_Aa	NovelBoundary	0	3.97	8.70	1.32	5.99	0.00	0.00	0.00
32	ER5a	ExonRegion	1	5.59	4.33	12.61	18.42	0.95	7.90	0.00
33	E5_Da	NovelBoundary	1	5.47	10.93	0.66	2.47	0.00	0.00	0.00
34	E5a_E6a	KnownJunction	1	2.40	0.00	11.42	13.03	0.00	8.09	0.00
35	E6_Aa	NovelBoundary	1	9.30	14.90	3.18	1.35	0.00	0.00	0.00
36	ER6a	ExonRegion	1	5.96	4.28	15.18	16.08	1.41	4.94	0.40
37	E6_Da	NovelBoundary	0	2.34	8.49	2.18	1.49	0.00	0.00	0.00
38	E6a_E7a	KnownJunction	1	0.58	0.00	11.61	17.39	2.07	3.67	0.00
39	I6	Intron	1	6.66	13.95	0.88	1.83	0.22	1.30	0.13
40	I6_SR1	SilentIntronRegion	1	5.88	14.86	0.61	1.69	0.12	1.39	0.43
41	I6_SR2	SilentIntronRegion	1	7.06	13.75	1.01	1.91	0.26	1.28	0.00
42	E7_Aa	NovelBoundary	1	3.32	21.94	0.72	1.30	0.00	0.00	0.75
43	ER7a	ExonRegion	0	3.61	5.52	10.61	12.34	1.08	8.59	0.00
44	E7_Da	NovelBoundary	1	2.35	24.46	0.72	3.22	0.97	0.00	0.00
45	E7a_E8a	KnownJunction	1	1.45	0.00	17.56	12.38	0.00	6.99	0.00
46	I7	Intron	1	3.32	11.80	1.87	2.16	0.28	1.48	0.23
47	I7_AR1	ActiveIntronRegion	1	3.34	11.84	1.88	2.17	0.28	1.49	0.23
48	E8_Aa	NovelBoundary	1	5.26	15.45	3.15	2.14	2.21	0.00	0.00
49	ER8a	ExonRegion	0	6.07	5.85	9.22	9.72	0.90	5.43	0.00
50	E8_Da	NovelBoundary	1	3.35	15.29	0.00	1.68	0.00	2.79	0.73
51	E8a_E9a	KnownJunction	0	1.03	1.63	5.91	7.86	0.00	3.11	0.00
52	I8	Intron	1	2.84	11.78	0.65	1.52	0.00	0.59	0.33
53	I8_SR1	SilentIntronRegion	1	2.86	11.85	0.66	1.53	0.00	0.60	0.33
54	E9_Aa	NovelBoundary	1	2.00	12.03	0.63	3.31	0.00	0.00	0.00
55	ER9a	ExonRegion	0	2.55	3.05	4.67	4.53	0.00	1.54	0.00
56	E9_Da	NovelBoundary	1	3.42	14.82	1.39	1.44	1.11	0.00	0.00
57	E9a_E10a	KnownJunction	0	4.89	1.26	3.77	5.63	0.00	1.66	0.00
58	E9a_E11a	KnownJunction	0	0.00	0.00	0.85	1.41	0.00	0.00	0.00
59	E10_Aa	NovelBoundary	1	2.87	14.37	0.70	2.17	0.00	0.00	0.00
60	ER10a	ExonRegion	0	4.90	12.34	7.31	9.31	0.33	5.00	0.00
61	E10_Da	NovelBoundary	1	4.06	19.39	0.83	4.23	0.00	0.00	0.00
62	E10a_E11a	KnownJunction	0	3.59	2.78	7.49	9.56	2.33	7.64	0.00
63	I10	Intron	1	3.23	9.25	0.65	1.97	0.00	0.97	0.00
64	I10_AR1	ActiveIntronRegion	1	3.25	9.31	0.66	1.99	0.00	0.98	0.00
65	E11_Aa	NovelBoundary	1	4.32	12.66	0.70	0.00	0.00	3.32	0.00
66	ER11a	ExonRegion	0	2.16	8.17	10.93	14.95	0.42	8.02	0.00
67	E11_Da	NovelBoundary	0	0.70	7.80	0.00	0.00	0.00	1.50	0.00
68	E11a_E12a	KnownJunction	1	1.87	2.44	18.26	18.86	0.00	4.85	0.00
69	I11	Intron	1	2.06	8.14	0.30	0.56	0.00	1.10	0.00
70	I11_SR1	SilentIntronRegion	1	2.08	8.23	0.31	0.56	0.00	1.11	0.00
71	E12_Aa	NovelBoundary	1	4.29	14.11	4.02	0.00	0.00	0.00	0.00
72	ER12a	ExonRegion	0	3.70	7.93	10.84	19.32	2.61	8.89	0.00
73	E12_Da	NovelBoundary	0	1.70	9.12	0.53	1.52	0.00	1.39	0.00
74	E12a_E13a	KnownJunction	1	3.57	2.36	13.51	21.70	4.17	10.69	0.00
75	I12	Intron	1	5.06	11.31	1.11	3.20	0.25	1.71	0.00
76	I12_SR1	SilentIntronRegion	1	5.09	11.38	1.11	3.22	0.25	1.73	0.00
77	E13_Aa	NovelBoundary	1	10.83	26.77	1.67	4.98	0.00	1.66	0.00
78	ER13a	ExonRegion	0	4.57	7.75	15.30	19.60	1.64	5.78	0.00
79	E13_Da	NovelBoundary	1	4.67	19.18	2.47	1.38	0.00	0.00	0.00
80	E13a_E14a	KnownJunction	0	5.27	3.97	12.20	14.52	0.00	4.85	0.00
81	I13	Intron	0	1.85	7.82	0.89	1.97	0.14	0.63	0.00
82	I13_AR1	ActiveIntronRegion	0	1.86	7.84	0.89	1.97	0.14	0.63	0.00
83	E14_Aa	NovelBoundary	0	3.20	7.88	0.00	0.00	0.00	0.00	0.00
84	ER14a	ExonRegion	1	4.25	4.31	13.67	18.63	0.16	4.78	0.00
85	E14a_E15a	KnownJunction	1	5.12	0.00	15.74	27.77	1.04	2.73	0.00
86	E14a_E15b	KnownJunction	0	0.00	0.00	0.52	1.46	0.00	0.00	0.00
87	E15_Aa	NovelBoundary	0	6.74	8.41	0.88	1.33	0.00	3.03	0.00
88	E15_Ab	NovelBoundary	0	4.14	14.16	11.30	13.25	0.90	3.94	0.00
89	ER15a	ExonRegion	1	4.65	5.63	15.12	23.43	1.24	3.16	0.00
90	ER15b	ExonRegion	0	8.07	15.72	11.91	15.36	1.41	8.56	0.00
91	E15_Da	NovelBoundary	1	1.77	10.67	0.00	4.50	0.00	0.00	0.00
92	E15a_E16a	KnownJunction	0	4.44	1.16	5.78	8.86	0.00	5.49	0.00
93	E16_Aa	NovelBoundary	1	3.71	16.84	0.86	13.44	1.15	1.47	0.00
94	ER16a	ExonRegion	0	3.78	17.28	7.43	17.15	4.16	14.03	0.33
95	E16_Da	NovelBoundary	1	3.25	20.89	2.13	10.10	4.59	3.32	0.00
96	E16a_E17a	KnownJunction	0	1.65	1.63	8.08	7.61	0.99	8.01	0.00
97	I16	Intron	0	1.54	10.31	1.90	6.00	7.37	1.96	0.52
98	I16_SR1	SilentIntronRegion	0	1.56	10.42	1.92	6.06	7.43	1.98	0.53
99	E17_Aa	NovelBoundary	0	1.54	12.74	3.71	6.04	7.95	6.27	0.00
100	ER17a	ExonRegion	0	2.49	4.66	9.34	11.85	4.12	8.86	0.00
101	E17_Da	NovelBoundary	0	3.40	18.81	1.64	8.56	9.13	4.18	0.62
102	E17a_E18a	KnownJunction	0	1.79	2.65	6.16	11.32	0.00	5.47	0.00
103	E17a_E19c	KnownJunction	0	0.00	0.00	2.93	2.74	0.00	1.18	0.00
104	ER18a	ExonRegion	0	8.88	13.17	10.27	18.87	10.26	16.13	3.68
105	E18_Da	NovelBoundary	1	7.03	27.40	2.69	6.15	0.00	1.10	8.15
106	E18a_E19b	KnownJunction	1	3.14	0.00	11.31	16.74	0.00	14.39	0.00
107	E18b_E19a	KnownJunction	1	2.67	18.02	0.83	5.99	0.00	3.14	1.71
108	E19_Aa	NovelBoundary	0	4.37	14.58	0.89	2.71	3.04	5.31	4.64
109	ER18b	ExonRegion	1	4.35	16.81	2.71	4.57	0.00	1.63	4.78
110	ER19a	ExonRegion	1	8.01	30.39	1.23	8.34	4.32	7.96	4.17
111	E19_Ab	KnownBoundary	1	20.21	64.81	1.47	17.07	8.09	17.15	12.55
112	ER19b	ExonRegion	0	18.35	41.60	9.92	24.10	9.29	18.20	9.85
113	E19_Da	KnownBoundary	1	11.07	49.42	2.40	12.71	30.78	6.91	20.32
114	E19a_E19c	KnownJunction	1	1.70	1.63	7.17	16.23	0.00	10.77	0.00
115	ER19c	ExonRegion	1	13.91	30.88	4.20	8.73	15.41	10.78	10.18
116	E19_Ac	KnownBoundary	1	22.00	72.54	7.66	16.82	43.71	21.55	23.93
117	ER19d	ExonRegion	0	13.50	22.43	17.23	26.55	18.55	21.20	9.31
118	E19_Db	NovelBoundary	1	32.93	88.82	13.82	30.07	29.12	16.00	32.09
119	E19b_E20a	KnownJunction	1	5.99	2.97	16.81	24.22	0.00	9.49	0.00
120	I19	Intron	1	8.94	37.37	3.72	14.51	15.81	10.71	11.97
121	I19_AR1	ActiveIntronRegion	1	9.02	37.66	3.75	14.61	15.94	10.80	12.06
122	E20_Aa	NovelBoundary	1	36.92	117.75	19.97	26.79	30.15	21.44	40.10
123	ER20a	ExonRegion	1	5.05	2.23	18.98	29.57	17.21	17.56	0.00
124	E20_Da	NovelBoundary	0	1.03	19.26	0.88	13.74	3.14	8.71	5.06
125	E20a_E21a	KnownJunction	1	4.27	2.65	20.09	31.48	0.00	23.80	0.00
126	I20	Intron	0	5.70	11.74	2.32	6.47	6.61	3.09	1.30
127	I20_AR1	ActiveIntronRegion	0	5.87	12.99	2.59	7.96	7.99	3.89	1.58
128	I20_SR1	SilentIntronRegion	0	5.29	8.20	1.52	2.07	2.57	0.71	0.47
129	E21_Aa	NovelBoundary	1	2.49	4.39	3.91	8.67	6.36	0.00	1.92
130	ER21a	ExonRegion	0	13.14	13.08	17.85	18.73	11.43	17.67	2.66