Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	NPAS2	Gene	0	331.29	173.54	314.29	72.33	6.04	79.43	448.44
2	335681	Transcript	0	438.10	229.05	420.56	93.59	8.20	99.42	599.33
3	ER1a	ExonRegion	0	13.68	21.62	11.85	6.11	0.03	7.90	5.20
4	E1a_E2a	KnownJunction	1	113.01	118.33	95.89	25.41	0.90	40.25	55.22
5	ER2a	ExonRegion	0	204.85	235.66	233.76	57.27	6.18	84.03	209.52
6	E2a_E3a	KnownJunction	0	205.30	296.11	274.82	79.32	7.19	118.35	306.43
7	ER3a	ExonRegion	0	313.64	425.22	426.26	115.88	11.65	140.91	564.18
8	E3a_E4a	KnownJunction	0	547.66	437.58	641.05	135.97	15.93	168.14	707.23
9	E3a_E5a	NovelJunction	0	1.72	11.09	3.13	1.68	0.00	2.79	0.77
10	ER4a	ExonRegion	0	484.72	399.52	663.95	133.21	17.25	144.87	926.43
11	E4a_E5a	KnownJunction	0	451.53	347.33	646.64	144.56	8.46	158.44	1065.99
12	E4a_E6a	NovelJunction	1	11.45	25.90	29.72	2.60	2.03	10.34	10.69
13	I4_AR2	ActiveIntronRegion	0	56.41	35.29	31.42	6.14	0.78	10.11	20.88
14	ER5a	ExonRegion	0	444.71	331.53	569.51	131.24	9.10	136.07	773.02
15	E5a_E6a	KnownJunction	0	523.98	279.40	613.70	100.29	16.81	128.08	574.69
16	ER6a	ExonRegion	0	920.54	324.56	923.68	124.37	19.09	144.42	920.81
17	E6a_E7a	KnownJunction	0	840.00	267.08	828.77	98.99	6.29	134.37	619.35
18	E6a_E8a	NovelJunction	1	27.67	10.35	55.11	2.90	0.00	5.44	5.82
19	ER7a	ExonRegion	0	869.09	253.05	756.55	81.27	10.53	112.36	662.03
20	E7a_E8a	KnownJunction	0	915.71	182.01	680.88	58.27	7.61	86.38	686.35
21	E7a_E11a	NovelJunction	1	95.28	39.07	136.27	18.15	2.12	15.95	27.29
22	ER8a	ExonRegion	0	654.88	219.68	577.52	81.34	6.34	94.16	755.06
23	E8a_E9a	KnownJunction	0	662.29	258.20	570.56	95.31	12.54	107.92	744.04
24	ER9a	ExonRegion	0	754.78	242.14	645.42	78.63	12.51	86.35	821.06
25	E9a_E10a	KnownJunction	0	662.67	185.06	645.00	94.85	7.56	95.25	923.04
26	ER10a	ExonRegion	0	518.33	215.21	507.70	97.44	9.07	85.74	917.28
27	E10a_E11a	KnownJunction	0	481.91	217.53	442.20	98.64	15.19	65.04	850.30
28	ER11a	ExonRegion	0	574.27	259.27	553.95	109.96	11.28	91.65	877.23
29	E11a_E12a	KnownJunction	0	604.86	241.57	549.52	123.07	7.93	105.59	1056.28
30	I11_SR1	SilentIntronRegion	0	66.31	31.75	42.09	14.96	0.68	17.85	13.66
31	ER12a	ExonRegion	0	542.90	251.66	495.84	116.55	10.78	101.84	888.51
32	E12a_E13a	KnownJunction	0	438.33	268.91	416.73	104.49	10.86	105.67	638.24
33	ER13a	ExonRegion	0	535.00	279.40	490.14	123.23	10.32	107.61	763.01
34	E13a_E14a	KnownJunction	0	419.77	224.12	404.08	103.00	6.62	103.58	595.73
35	ER14a	ExonRegion	0	317.48	177.15	296.78	89.61	6.26	77.16	475.18
36	E14a_E15a	KnownJunction	0	303.99	162.78	247.34	79.21	6.09	102.54	430.14
37	ER15a	ExonRegion	0	399.66	188.01	306.56	107.86	7.49	103.31	491.42
38	E15a_E16a	KnownJunction	0	490.08	199.48	371.62	141.50	11.66	111.65	545.41
39	E16_Aa	NovelBoundary	1	96.45	21.02	17.47	1.25	0.00	3.03	24.64
40	ER16a	ExonRegion	0	435.74	233.98	345.20	126.44	6.73	107.03	549.31
41	E16a_E17a	KnownJunction	0	373.20	162.86	283.14	89.83	4.10	76.38	483.71
42	E16a_E20a	NovelJunction	1	7.21	0.00	12.65	12.08	0.00	4.72	3.04
43	E17_Aa	NovelBoundary	1	156.48	20.33	129.15	8.45	0.00	10.67	14.06
44	ER17a	ExonRegion	0	284.51	184.02	274.78	82.97	3.93	84.61	442.16
45	E17a_E18a	KnownJunction	0	225.98	172.81	238.17	79.62	3.25	79.38	399.96
46	E18_Aa	NovelBoundary	1	99.66	5.78	100.26	1.60	1.15	5.95	12.33
47	ER18a	ExonRegion	0	191.82	197.93	195.64	92.89	4.47	97.73	432.26
48	E18a_E19a	KnownJunction	1	146.84	210.15	164.14	87.18	2.28	110.71	456.56
49	ER19a	ExonRegion	0	212.06	203.06	176.21	83.36	3.74	103.05	442.29
50	E19_Da	NovelBoundary	1	119.52	1.63	90.46	1.63	1.04	2.30	6.84
51	E19a_E20a	KnownJunction	0	341.46	201.29	242.50	117.95	9.06	97.71	638.58
52	ER20a	ExonRegion	0	235.70	152.21	180.65	71.47	4.40	83.34	466.15
53	E20a_E21a	KnownJunction	0	111.17	80.86	81.31	29.50	1.94	33.29	192.67
54	ER21a	ExonRegion	0	193.95	82.85	172.94	39.23	2.98	53.23	220.47