Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RABL2A	Gene	0	14.72	7.46	10.70	5.03	10.72	3.39	10.41
2	409191	Transcript	0	0.82	0.99	0.86	0.49	1.68	0.29	0.54
3	409842	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	393165	Transcript	0	0	0	0	0	0	0	0
5	408997	Transcript	0	4.29	2.30	1.58	0.67	2.64	0.29	2.37
6	393166	Transcript	0	0	0	0	0	0	0	0
7	393167	Transcript	0	0	0	0	0	0	0	0
8	409875	Transcript	0	0.69	0.25	0.83	0.29	0.18	0.00	0.32
9	409121	Transcript	0	10.71	8.72	8.86	4.07	6.91	0.28	11.78
10	376439	Transcript	0	0	0	0	0	0	0	0
11	337788	Transcript	0	0	0	0	0	0	0	0
12	ER1a	ExonRegion	0	0.00	0.00	0.68	0.00	0.00	0.00	0.00
13	E1_Ad	KnownBoundary	0	0.88	1.29	3.94	1.57	0.00	0.00	0.76
14	ER1b	ExonRegion	0	0.00	0.00	0.68	0.00	0.00	0.00	0.00
15	ER1c	ExonRegion	0	0.63	0.95	1.43	2.14	0.00	0.35	1.33
16	ER1d	ExonRegion	0	0.77	5.34	3.30	2.49	0.00	1.93	6.66
17	E1_Ae	KnownBoundary	0	9.00	1.39	8.62	1.49	3.25	3.24	8.81
18	E1_Af	KnownBoundary	1	13.35	19.57	13.57	4.80	5.67	2.68	29.19
19	ER1e	ExonRegion	1	0.77	7.29	3.39	2.49	0.00	2.45	8.10
20	ER1f	ExonRegion	0	0.12	4.52	0.88	1.06	0.23	2.11	3.43
21	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.18	0.00
22	E1a_E2b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	E1a_E3b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	E1a_E3d	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	ER2a	ExonRegion	0	3.26	3.98	2.76	1.96	6.72	0.00	2.18
26	E2a_E3b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	ER2b	ExonRegion	0	0.90	2.43	1.58	0.00	2.02	0.00	0.90
28	ER2c	ExonRegion	0	1.84	0.00	2.32	0.64	0.02	0.00	1.03
29	E2b_E3b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	I2_AR1	ActiveIntronRegion	1	6.48	7.87	9.43	4.37	3.08	0.00	8.34
31	E3_Aa	NovelBoundary	0	24.45	22.33	22.63	6.99	21.76	0.00	33.62
32	ER3a	ExonRegion	0	19.01	17.44	16.71	8.15	13.82	0.56	23.57
33	E3_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	E3_Ac	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	E3_Ad	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	ER3b	ExonRegion	0	21.52	20.65	19.64	12.47	17.01	1.23	29.68
37	ER3c	ExonRegion	0	21.77	20.65	20.77	12.47	17.55	1.23	29.46
38	ER3d	ExonRegion	0	18.23	13.90	19.06	8.82	8.33	6.74	26.09
39	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	ER4a	ExonRegion	0	14.01	8.02	10.54	6.82	7.10	6.95	13.27
42	I4_SR1	SilentIntronRegion	1	5.93	7.22	3.87	2.38	2.95	1.25	8.50
43	ER5a	ExonRegion	0	16.15	23.43	22.39	19.14	26.53	13.92	22.30
44	E5a_E6a	KnownJunction	0	15.69	20.31	22.72	5.15	17.36	8.58	34.02
45	E5a_E9a	KnownJunction	0	4.46	8.17	6.37	13.22	14.41	6.51	2.97
46	ER6a	ExonRegion	0	19.41	13.04	23.18	4.30	11.43	3.68	25.00
47	E6a_E7a	KnownJunction	0	2.00	1.63	0.00	0.00	0.00	0.00	0.00
48	E6a_E8a	KnownJunction	0	20.88	5.67	28.05	6.37	16.71	0.00	22.54
49	E6a_E9a	NovelJunction	1	13.24	11.74	6.74	7.72	3.41	1.31	2.12
50	I6_AR2	ActiveIntronRegion	0	3.84	8.68	2.13	0.00	0.81	2.10	4.05
51	I6_AR3	ActiveIntronRegion	1	9.29	3.57	4.83	2.05	2.87	1.56	11.19
52	ER7a	ExonRegion	0	6.57	2.98	3.15	1.34	5.27	0.59	4.73
53	E8_Aa	NovelBoundary	0	3.94	2.65	4.77	1.68	1.04	2.30	8.84
54	ER8a	ExonRegion	0	14.09	6.02	15.97	2.49	9.22	0.83	16.24
55	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
56	E8a_E9b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
57	ER9a	ExonRegion	0	18.83	10.93	27.10	14.03	25.92	7.66	21.92
58	ER9b	ExonRegion	0	18.83	9.64	21.37	10.15	20.01	4.77	16.52
59	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
60	E9b_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
61	ER9c	ExonRegion	0	1.59	1.26	1.83	0.83	0.86	0.00	0.56
62	ER10a	ExonRegion	0	7.77	6.05	9.99	5.74	14.17	1.37	6.90
63	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
64	ER11a	ExonRegion	0	8.41	11.70	12.96	11.09	22.00	2.74	13.12
65	E11_Da	KnownBoundary	0	71.62	41.90	62.54	23.03	67.15	15.54	54.04
66	E11a_E11c	KnownJunction	0	0.72	0.00	0.00	1.49	1.08	0.00	2.29
67	ER11b	ExonRegion	0	16.75	15.09	16.10	10.76	13.27	3.89	17.53
68	E11_Db	KnownBoundary	0	88.77	53.62	57.97	15.47	73.22	7.10	32.59
69	ER11c	ExonRegion	0	82.43	19.37	51.90	14.55	41.20	17.12	32.49
70	E11_Dc	KnownBoundary	0	325.40	53.67	193.01	41.80	309.85	33.53	128.47
71	E11c_E11b	KnownJunction	0	2.40	0.00	1.02	0.00	0.00	0.00	0.00
72	ER11d	ExonRegion	1	72.44	15.89	42.28	13.24	30.57	10.85	25.00
73	E11_Ab	KnownBoundary	0	83.03	36.28	67.11	41.12	113.33	41.86	65.51
74	ER11e	ExonRegion	0	13.05	9.02	8.58	7.44	12.17	7.29	8.35
75	E11_Ac	KnownBoundary	1	52.27	44.61	29.88	36.30	51.71	35.51	59.45
76	ER11f	ExonRegion	0	4.94	6.45	4.39	5.80	9.47	3.68	6.73
77	ER11g	ExonRegion	0	2.31	0.00	0.68	0.00	1.62	0.00	3.71
78	ER11h	ExonRegion	0	1.54	0.00	0.68	0.00	1.62	0.00	3.37