Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	EPB41L5	Gene	0	76.01	78.75	34.08	33.92	87.36	50.08	52.49
2	331393	Transcript	1	153.35	197.51	41.82	92.84	135.10	36.39	130.13
3	263713	Transcript	0	35.18	27.10	19.54	15.94	72.80	32.18	24.87
4	IG35_AR1	ActiveIntergenicRegion	0	13.69	2.30	23.55	4.02	110.47	1.28	9.28
5	IG35_SR1	SilentIntergenicRegion	0	18.14	5.02	24.83	6.61	128.53	3.06	7.32
6	IG35_AR2	ActiveIntergenicRegion	0	17.10	4.40	21.25	5.05	123.01	1.61	7.61
7	IG35_AR3	ActiveIntergenicRegion	0	11.29	1.49	16.78	0.84	59.21	0.00	7.15
8	IG35_AR4	ActiveIntergenicRegion	0	8.58	1.75	16.33	2.81	93.73	1.74	5.27
9	IG35_SR2	SilentIntergenicRegion	0	1.89	1.01	3.02	0.83	9.12	0.41	1.13
10	ER1a	ExonRegion	1	31.53	46.60	6.49	15.84	17.43	18.66	13.70
11	E1a_E2a	KnownJunction	1	16.24	88.80	7.49	13.68	12.75	22.27	22.69
12	I1_AR2	ActiveIntronRegion	0	21.62	4.65	10.64	3.28	3.47	3.05	3.18
13	ER2a	ExonRegion	0	123.87	156.72	43.69	75.39	83.20	77.60	76.37
14	E2a_E3a	KnownJunction	0	201.23	224.04	59.32	89.97	156.78	122.96	96.89
15	E2a_E4a	NovelJunction	1	1.75	21.94	2.18	2.55	2.19	1.58	1.78
16	ER3a	ExonRegion	0	348.17	305.87	114.63	142.12	197.96	148.93	135.54
17	E3a_E4a	KnownJunction	0	300.27	328.79	111.34	129.79	143.53	150.86	113.53
18	ER4a	ExonRegion	0	377.03	367.85	121.91	136.12	223.93	171.07	138.65
19	E4a_E5a	KnownJunction	0	345.70	282.26	102.07	110.48	281.43	123.57	124.97
20	E4a_E6a	NovelJunction	1	17.26	13.03	5.37	3.12	0.97	2.73	2.48
21	ER5a	ExonRegion	0	385.56	312.73	133.54	136.76	302.29	138.12	155.28
22	E5a_E6a	KnownJunction	0	209.49	206.97	94.97	86.26	204.76	91.52	101.81
23	ER6a	ExonRegion	0	254.05	239.68	96.70	80.00	188.80	84.02	112.39
24	E6a_E7a	KnownJunction	1	209.69	194.36	66.97	60.87	187.83	45.35	88.37
25	ER7a	ExonRegion	0	196.91	235.50	80.28	82.63	173.78	86.68	122.50
26	E7a_E8a	KnownJunction	0	122.35	204.26	64.13	87.91	162.55	90.45	113.71
27	I7	Intron	1	23.25	3.13	4.49	1.65	2.16	1.93	1.12
28	I7_SR1	SilentIntronRegion	1	23.29	3.13	4.50	1.66	2.17	1.94	1.12
29	ER8a	ExonRegion	0	165.32	226.05	75.95	95.66	164.29	94.13	130.36
30	E8a_E9a	KnownJunction	0	214.90	255.46	88.26	80.33	188.04	106.56	135.68
31	ER9a	ExonRegion	0	191.93	231.83	94.73	104.02	181.17	114.10	144.10
32	E9a_E10a	KnownJunction	0	193.29	248.69	86.87	117.66	215.04	142.28	141.41
33	ER10a	ExonRegion	0	274.26	232.68	99.13	103.43	224.08	130.45	151.63
34	E10a_E11a	KnownJunction	0	314.00	211.30	126.69	84.06	149.27	111.57	125.76
35	ER11a	ExonRegion	0	235.53	229.47	115.83	100.36	195.05	107.84	160.57
36	E11a_E12a	KnownJunction	0	194.37	217.24	93.85	112.54	281.64	102.86	180.95
37	E12_Aa	NovelBoundary	1	80.45	0.00	33.91	0.00	1.08	0.00	0.57
38	ER12a	ExonRegion	0	244.34	235.72	96.68	104.05	222.59	99.75	170.48
39	E12a_E13a	KnownJunction	0	258.84	278.53	98.95	120.93	207.98	113.79	182.88
40	ER13a	ExonRegion	0	240.87	315.68	92.42	125.29	246.10	127.66	191.24
41	E13a_E14a	KnownJunction	0	156.72	276.90	66.69	100.51	235.74	90.93	154.02
42	E14a_E15a	KnownJunction	1	189.31	176.33	56.02	89.08	302.22	43.15	108.00
43	ER14a	ExonRegion	0	259.24	323.63	93.09	136.99	316.39	102.20	196.40
44	ER15a	ExonRegion	0	291.42	286.93	90.94	114.11	249.19	111.77	190.63
45	E15a_E16a	KnownJunction	0	209.04	254.70	71.21	73.25	192.26	105.43	158.71
46	ER16a	ExonRegion	0	156.58	260.78	57.24	105.85	175.28	93.71	137.43
47	E16a_E17a	KnownJunction	1	167.32	209.51	44.79	105.38	131.15	23.96	141.74
48	E16a_E18a	KnownJunction	1	6.06	4.52	9.14	5.09	60.68	28.41	2.67
49	ER17a	ExonRegion	1	139.39	185.51	38.84	80.29	139.04	48.82	118.52
50	E17_Da	NovelBoundary	1	183.26	224.15	48.73	119.53	103.05	73.38	133.14
51	I17	Intron	1	41.44	27.48	11.43	9.84	23.83	11.71	23.67
52	I17_AR1	ActiveIntronRegion	1	139.88	134.45	49.96	53.72	95.93	50.81	96.75
53	I17_SR1	SilentIntronRegion	1	63.37	28.44	22.55	8.29	34.73	3.68	15.91
54	I17_AR2	ActiveIntronRegion	1	38.29	29.97	10.84	9.26	23.27	9.40	21.63
55	I17_AR3	ActiveIntronRegion	1	99.24	33.07	24.06	13.96	49.60	14.80	45.45
56	I17_AR4	ActiveIntronRegion	1	109.40	33.62	22.46	13.28	58.02	16.16	57.98
57	I17_SR2	SilentIntronRegion	1	52.69	18.92	10.11	13.01	38.34	6.21	23.74
58	I17_AR5	ActiveIntronRegion	1	53.98	31.01	15.11	12.60	36.27	10.89	27.09
59	I17_SR3	SilentIntronRegion	0	25.16	7.29	5.56	2.45	15.11	2.13	7.27
60	I17_AR6	ActiveIntronRegion	1	27.79	8.71	3.84	4.57	22.54	4.90	7.08
61	I17_SR4	SilentIntronRegion	1	35.33	19.57	7.40	5.81	24.10	7.39	14.88
62	I17_AR7	ActiveIntronRegion	1	45.63	33.28	11.35	4.21	26.67	18.49	26.25
63	I17_AR8	ActiveIntronRegion	1	37.73	28.58	10.09	7.15	23.23	14.13	23.22
64	I17_AR9	ActiveIntronRegion	1	44.29	29.47	9.16	8.45	44.73	13.41	27.71
65	I17_AR10	ActiveIntronRegion	1	39.34	20.65	6.54	5.32	28.96	6.95	17.00
66	I17_SR5	SilentIntronRegion	1	19.33	8.58	4.58	2.41	5.06	6.10	10.56
67	E18_Aa	NovelBoundary	0	27.84	11.27	8.88	2.57	9.54	4.26	19.51
68	ER18a	ExonRegion	0	33.63	26.73	20.09	12.55	69.43	29.65	20.86
69	E18a_E19a	KnownJunction	0	43.06	32.87	22.22	15.36	58.95	32.78	18.54
70	ER19a	ExonRegion	0	39.85	25.03	23.65	20.31	94.05	36.67	31.55
71	E19a_E20a	KnownJunction	0	42.91	28.50	30.70	21.75	132.32	35.75	23.93
72	ER20a	ExonRegion	0	66.44	31.09	27.73	25.53	96.18	42.56	32.10
73	E20a_E21a	KnownJunction	0	41.57	24.06	20.55	17.01	85.76	29.02	25.38
74	ER21a	ExonRegion	0	58.21	31.75	27.69	24.02	102.13	37.86	28.46
75	E21a_E22a	KnownJunction	0	73.45	37.07	31.01	31.78	139.26	53.73	32.22
76	ER22a	ExonRegion	0	37.89	30.51	18.24	17.29	75.88	38.64	34.20
77	E22a_E23a	KnownJunction	0	28.91	26.25	20.64	11.41	46.13	22.19	37.12
78	ER23a	ExonRegion	0	27.54	25.16	20.25	14.53	48.66	25.84	26.73
79	E23a_E24a	KnownJunction	0	25.22	27.45	19.21	17.64	55.86	25.70	18.79
80	E24_Aa	NovelBoundary	0	12.90	4.44	13.77	2.95	13.07	1.31	4.26
81	ER24a	ExonRegion	0	22.82	24.47	13.92	12.11	45.68	31.29	19.11
82	E24_Da	NovelBoundary	0	10.45	8.04	9.87	2.63	31.47	0.00	4.93
83	E24a_E25a	KnownJunction	1	16.42	24.56	3.03	4.82	41.75	24.74	17.14
84	ER25a	ExonRegion	0	20.89	32.38	12.40	12.58	62.20	29.51	32.87
85	E25a_E26a	KnownJunction	0	15.87	24.54	11.12	10.24	39.77	19.48	18.83
86	ER26a	ExonRegion	0	32.56	30.81	20.16	12.85	55.67	35.46	27.16