Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 SFXN5 Gene 0 7.41 5.29 20.31 9.69 40.41 10.72 13.59 2 272433 Transcript 0 5.13 5.84 12.24 9.97 34.06 11.65 13.12 3 410065 Transcript 0 1.03 0.00 1.41 0.00 1.01 0.00 1.33 4 IG29 Intergenic 0 12.77 14.30 16.06 26.64 0.46 14.79 5.14 5 IG29_SR1 SilentIntergenicRegion 0 15.01 15.47 20.04 30.28 0.34 15.09 5.85 6 IG29_AR1 ActiveIntergenicRegion 0 8.21 12.08 7.86 19.29 0.72 14.38 3.73 7 ER1a ExonRegion 0 3.18 8.47 3.99 12.67 3.20 10.93 1.67 8 E1_Ab KnownBoundary 0 6.16 9.90 8.64 14.52 13.30 9.14 2.29 9 ER1b ExonRegion 0 3.74 4.29 4.12 10.90 14.85 9.10 1.19 10 E1_Da NovelBoundary 0 4.84 1.23 3.64 4.80 0.00 9.19 0.80 11 E1a_E2a KnownJunction 1 5.22 1.44 10.78 8.72 6.13 5.92 2.61 12 I1 Intron 0 8.40 8.00 7.54 9.51 2.70 6.90 2.64 13 I1_SR2 SilentIntronRegion 0 10.61 9.87 9.83 11.01 3.41 8.01 3.49 14 I1_AR2 ActiveIntronRegion 0 11.86 9.01 7.46 10.87 2.39 7.22 1.94 15 I1_SR3 SilentIntronRegion 0 4.35 2.64 2.31 7.46 1.31 8.49 0.17 16 I1_AR3 ActiveIntronRegion 0 1.95 5.68 3.20 9.56 1.01 6.39 0.01 17 I1_SR4 SilentIntronRegion 0 0.13 6.28 1.35 11.22 0.81 4.90 0.67 18 E2_Aa NovelBoundary 0 10.30 3.05 4.86 12.35 4.38 3.32 3.44 19 ER2a ExonRegion 0 8.51 6.78 13.34 10.72 14.88 14.73 4.49 20 E2_Da NovelBoundary 0 3.84 8.35 6.18 11.62 5.58 5.68 1.63 21 E2a_E3a KnownJunction 0 5.01 11.43 17.04 6.39 20.70 16.80 9.34 22 I2_AR1 ActiveIntronRegion 0 7.80 4.12 5.44 8.24 4.32 5.26 1.45 23 I2_SR1 SilentIntronRegion 0 8.62 6.00 3.91 14.86 2.83 10.40 3.99 24 I2_AR3 ActiveIntronRegion 0 6.88 3.98 4.19 7.50 3.76 8.28 3.06 25 ER3a ExonRegion 0 7.95 8.83 27.86 12.17 44.30 14.29 14.62 26 E3a_E4a KnownJunction 0 7.99 7.41 29.62 14.95 68.58 10.00 12.96 27 I3_SR1 SilentIntronRegion 0 3.32 5.11 2.17 9.07 1.20 6.88 3.06 28 E4a_E5a KnownJunction 0 3.91 5.52 29.42 11.89 88.64 19.54 15.29 29 ER4a ExonRegion 0 7.37 8.41 41.19 16.76 98.35 19.84 17.71 30 ER5a ExonRegion 0 9.11 6.98 35.68 18.18 109.92 27.48 21.02 31 E5a_E6a KnownJunction 0 8.26 5.25 21.97 18.26 112.31 31.76 17.07 32 E6a_E7a KnownJunction 0 15.19 4.02 33.30 13.27 61.83 15.68 15.64 33 ER6a ExonRegion 0 17.56 5.05 40.98 20.81 99.92 23.01 22.13 34 I6_AR1 ActiveIntronRegion 0 6.42 3.46 4.86 8.86 2.11 3.04 3.36 35 I6_AR5 ActiveIntronRegion 0 9.14 2.43 9.03 7.76 3.69 2.11 4.35 36 I6_AR6 ActiveIntronRegion 0 9.38 4.90 5.40 8.13 6.85 6.20 6.64 37 ER7a ExonRegion 0 16.52 4.16 37.27 17.27 45.89 19.66 22.64 38 E7a_E8a KnownJunction 0 10.48 1.44 28.91 14.20 34.67 17.98 18.01 39 ER8a ExonRegion 0 8.61 3.20 37.27 15.73 61.42 18.97 23.18 40 E8a_E9a KnownJunction 0 5.31 4.44 31.38 15.09 56.43 17.61 21.76 41 ER9a ExonRegion 0 14.81 7.38 38.18 14.00 88.42 22.03 23.40 42 E9a_E10a KnownJunction 0 27.17 9.27 44.99 20.40 160.86 20.26 33.08 43 ER10a ExonRegion 0 14.53 6.27 32.16 10.65 94.37 16.56 27.56 44 E10a_E11a KnownJunction 0 4.31 5.25 13.54 8.83 38.08 18.55 17.53 45 E10a_E13a KnownJunction 0 1.03 0.00 1.41 0.00 1.01 0.00 1.33 46 E11_Aa NovelBoundary 1 1.90 1.63 1.37 2.55 1.98 1.02 14.60 47 ER11a ExonRegion 0 6.74 7.95 15.20 14.60 54.83 13.61 18.25 48 E11a_E12a KnownJunction 0 5.66 4.70 20.42 14.09 36.75 14.31 20.97 49 ER12a ExonRegion 0 5.18 6.65 8.40 9.08 41.49 13.13 15.34 50 E12a_E13a KnownJunction 0 3.49 2.89 3.56 1.68 26.10 1.37 4.72 51 ER13a ExonRegion 0 2.98 3.44 8.97 4.63 27.98 2.58 12.43 52 E13a_E14a KnownJunction 0 0.97 6.99 12.99 1.68 49.75 8.42 16.31 53 ER14a ExonRegion 0 4.57 4.35 16.41 6.51 31.72 5.14 10.34 54 E14_Da KnownBoundary 0 3.66 2.29 20.65 8.59 33.98 6.81 9.40 55 ER14b ExonRegion 0 7.33 4.97 20.59 8.85 37.94 9.63 13.38 56 IG28_AR1 ActiveIntergenicRegion 0 0.00 0.11 0.23 0.00 8.28 0.36 0.61