Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	GGCX	Gene	0	66.16	35.39	78.53	36.35	71.27	83.43	98.43
2	233838	Transcript	0	58.97	30.94	73.29	27.61	78.01	46.48	110.52
3	IG24_AR2	ActiveIntergenicRegion	0	1.21	1.53	1.80	3.69	1.01	11.18	0.02
4	IG24_SR1	SilentIntergenicRegion	0	0.00	1.21	0.68	4.06	0.00	14.98	0.67
5	ER1a	ExonRegion	0	25.59	4.74	15.25	7.85	23.77	4.99	23.32
6	E1a_E2a	KnownJunction	0	21.66	7.59	18.39	11.27	14.68	8.01	28.16
7	E1a_E3a	NovelJunction	0	3.10	20.33	7.20	21.86	4.24	5.82	7.25
8	E2_Aa	NovelBoundary	1	2.34	2.60	2.27	3.25	0.00	41.46	0.00
9	ER2a	ExonRegion	0	60.30	19.86	48.47	22.93	42.51	35.25	58.99
10	E2a_E3a	KnownJunction	1	33.21	22.25	51.88	26.17	108.83	8.79	72.55
11	ER3a	ExonRegion	0	45.40	40.56	62.38	39.46	78.98	28.28	103.44
12	E3_Da	NovelBoundary	0	19.39	31.32	25.97	40.83	26.95	30.02	23.22
13	E3a_E4a	KnownJunction	0	51.37	21.31	76.15	10.21	53.83	16.43	97.70
14	I3	Intron	0	7.56	8.21	14.13	8.82	10.18	12.85	11.48
15	I3_AR1	ActiveIntronRegion	0	7.61	8.24	14.21	8.87	10.25	12.93	11.55
16	ER4a	ExonRegion	0	52.21	39.10	64.22	19.82	75.80	21.14	142.60
17	E4a_E5a	KnownJunction	0	73.17	38.80	78.52	19.61	108.79	19.43	138.20
18	I4	Intron	1	8.21	3.77	7.89	9.18	2.24	60.59	3.16
19	I4_SR2	SilentIntronRegion	1	8.48	3.82	8.12	9.46	2.31	62.57	3.24
20	E5_Aa	NovelBoundary	1	8.26	8.91	6.83	17.15	0.00	65.31	4.66
21	ER5a	ExonRegion	0	82.27	33.88	84.97	22.63	118.99	38.72	143.63
22	E5_Da	NovelBoundary	1	4.29	11.14	11.48	16.44	0.00	138.15	3.53
23	E5a_E6a	KnownJunction	1	82.36	30.45	81.74	10.51	105.01	23.02	130.79
24	I5	Intron	1	4.50	3.31	6.54	14.03	0.68	57.49	0.99
25	I5_SR1	SilentIntronRegion	1	4.55	3.35	6.63	14.23	0.69	58.25	1.00
26	E6_Aa	NovelBoundary	1	17.64	10.40	30.49	32.83	3.11	181.89	1.39
27	ER6a	ExonRegion	0	109.15	39.78	117.90	42.55	112.71	148.78	148.25
28	E6_Da	NovelBoundary	1	10.16	10.69	12.29	34.92	0.88	210.00	1.49
29	E6a_E7a	KnownJunction	0	88.61	27.16	109.72	33.19	104.36	15.62	148.59
30	I6	Intron	1	7.26	7.88	10.27	21.58	0.77	122.78	1.28
31	I6_AR1	ActiveIntronRegion	1	6.55	9.15	11.65	23.81	0.71	137.40	1.39
32	I6_SR1	SilentIntronRegion	1	2.87	5.94	4.06	9.61	0.54	74.00	0.24
33	I6_AR2	ActiveIntronRegion	1	12.49	3.87	8.06	19.12	1.16	90.91	1.40
34	E7_Aa	NovelBoundary	1	13.13	9.46	14.50	29.20	2.17	103.13	6.91
35	ER7a	ExonRegion	0	106.27	48.55	101.93	56.46	103.51	166.24	128.80
36	E7_Da	NovelBoundary	1	14.14	13.77	17.49	48.90	1.18	162.81	2.57
37	E7a_E8a	KnownJunction	1	46.16	38.70	69.28	30.83	97.70	13.56	124.24
38	I7	Intron	1	9.21	6.07	11.19	9.77	1.07	109.30	0.58
39	I7_SR1	SilentIntronRegion	1	11.06	6.52	14.66	12.26	1.03	144.68	0.64
40	I7_AR1	ActiveIntronRegion	1	5.30	5.23	3.67	4.41	1.17	32.13	0.47
41	E8_Aa	NovelBoundary	1	8.88	13.35	10.06	25.19	2.28	98.68	0.00
42	ER8a	ExonRegion	0	53.28	41.66	67.83	38.96	75.90	85.69	124.07
43	E8_Da	NovelBoundary	1	7.53	2.13	7.73	13.22	0.00	107.90	0.00
44	E8a_E9a	KnownJunction	0	46.92	25.01	70.50	28.85	59.71	10.80	135.96
45	I8	Intron	1	5.66	5.16	9.01	12.31	0.00	73.78	0.00
46	I8_SR1	SilentIntronRegion	1	5.73	5.23	9.11	12.43	0.00	74.64	0.00
47	E9_Aa	NovelBoundary	1	41.84	17.97	56.32	21.05	0.00	189.39	0.64
48	ER9a	ExonRegion	0	53.77	36.78	69.26	33.47	77.64	69.60	140.45
49	E9_Da	NovelBoundary	1	21.93	7.12	24.77	24.73	2.28	122.56	1.76
50	E9a_E10a	KnownJunction	1	21.25	15.66	51.89	13.55	64.13	6.35	111.63
51	E9a_E11a	NovelJunction	0	11.62	16.29	6.25	12.73	6.11	6.65	9.93
52	I9	Intron	1	10.31	7.43	16.34	20.11	1.34	86.45	2.07
53	I9_AR1	ActiveIntronRegion	1	10.37	7.47	16.42	20.21	1.34	86.87	2.08
54	E10_Aa	NovelBoundary	1	12.87	12.30	22.32	22.05	0.00	131.10	1.43
55	ER10a	ExonRegion	1	42.93	20.56	73.46	27.81	77.27	60.16	142.17
56	E10_Da	NovelBoundary	1	7.93	9.06	24.49	33.59	1.98	148.71	0.86
57	E10a_E11a	KnownJunction	1	34.33	13.79	59.84	8.89	71.14	8.12	109.84
58	I10	Intron	1	6.74	9.98	21.93	28.08	2.85	117.56	3.07
59	I10_SR1	SilentIntronRegion	1	6.77	10.03	22.02	28.20	2.86	118.07	3.08
60	E11_Aa	NovelBoundary	1	10.71	9.14	25.45	20.83	1.18	152.01	0.70
61	ER11a	ExonRegion	0	50.17	33.64	75.41	35.22	74.14	95.25	120.03
62	E11_Da	NovelBoundary	1	7.29	3.73	23.62	37.47	0.00	126.31	2.29
63	E11a_E12a	KnownJunction	1	45.30	40.72	71.98	11.78	51.62	12.60	105.68
64	I11	Intron	1	6.09	10.51	15.08	19.31	2.47	90.07	5.10
65	I11_SR1	SilentIntronRegion	1	6.14	10.62	15.23	19.50	2.49	90.90	5.15
66	E12_Aa	NovelBoundary	1	9.90	13.61	16.30	29.88	2.35	129.26	2.97
67	ER12a	ExonRegion	0	59.36	42.11	78.31	31.84	67.40	93.92	118.54
68	E12_Da	NovelBoundary	1	18.06	11.30	31.41	34.08	0.00	171.12	0.00
69	E12a_E13a	KnownJunction	0	65.91	42.59	92.85	21.35	123.06	23.29	135.00
70	I12	Intron	1	4.83	3.22	12.74	11.91	0.43	72.80	0.36
71	I12_SR1	SilentIntronRegion	1	4.86	3.23	12.82	11.99	0.44	73.29	0.36
72	E13_Aa	NovelBoundary	1	4.86	10.48	20.94	19.13	0.00	104.73	0.89
73	ER13a	ExonRegion	0	65.43	35.54	94.89	44.18	85.37	93.26	116.86
74	E13_Da	NovelBoundary	1	5.29	25.96	20.00	25.38	7.38	147.08	4.70
75	E13a_E14a	KnownJunction	1	69.85	27.30	75.20	32.67	83.94	11.63	102.77
76	I13	Intron	1	4.37	10.58	14.15	16.78	2.83	79.00	2.05
77	I13_SR1	SilentIntronRegion	1	4.42	10.70	14.30	16.96	2.86	79.84	2.07
78	E14_Aa	NovelBoundary	1	7.44	11.09	23.39	13.49	2.19	97.77	0.87
79	ER14a	ExonRegion	0	91.11	39.95	104.76	44.35	77.74	104.32	96.58
80	E14_Da	NovelBoundary	1	6.99	11.11	15.36	26.09	0.00	124.24	0.00
81	E14a_E15a	KnownJunction	0	62.20	34.15	76.22	35.41	65.49	30.15	93.90
82	I14	Intron	1	7.39	9.28	13.51	20.55	0.96	111.52	0.12
83	I14_SR1	SilentIntronRegion	1	7.43	9.31	13.57	20.64	0.96	112.03	0.12
84	E15_Aa	NovelBoundary	1	5.81	18.47	13.94	30.97	0.00	151.50	0.00
85	ER15a	ExonRegion	0	70.46	35.19	82.21	38.98	58.34	94.66	62.37
86	IG23	Intergenic	0	59.30	27.05	87.69	40.21	19.55	88.80	30.41
87	IG23_AR6	ActiveIntergenicRegion	0	15.72	6.07	24.44	9.40	3.99	11.60	7.73
88	IG23_SR3	SilentIntergenicRegion	0	69.34	19.58	99.25	30.45	25.23	78.71	26.99
89	IG23_AR5	ActiveIntergenicRegion	0	67.71	24.67	100.47	42.55	21.58	117.44	33.10
90	IG23_AR3	ActiveIntergenicRegion	0	58.77	30.97	90.94	48.03	20.10	89.09	36.21
91	IG23_AR1	ActiveIntergenicRegion	0	55.25	24.13	75.53	28.73	17.37	73.06	20.87