Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RTKN	Gene	0	157.19	255.00	135.72	184.04	80.35	51.91	294.94
2	272430	Transcript	0	94.85	195.94	86.02	161.15	17.81	43.09	212.37
3	305557	Transcript	0	11.61	5.45	8.44	5.04	7.59	0.89	21.58
4	233330	Transcript	0	0.00	0.00	0.00	0.00	4.24	1.23	13.33
5	393983	Transcript	0	0	0	0	0	0	0	0
6	IG10_AR1	ActiveIntergenicRegion	0	6.09	7.51	3.67	2.57	4.07	0.18	6.73
7	ER1a	ExonRegion	0	73.11	135.14	64.27	112.26	21.26	30.00	142.13
8	E1a_E4a	KnownJunction	0	116.60	256.75	107.76	210.04	14.36	56.17	282.60
9	ER2a	ExonRegion	0	6.69	7.54	2.32	2.87	7.18	1.67	17.56
10	E2a_E3a	KnownJunction	0	1.25	0.00	0.82	0.00	2.05	0.00	7.41
11	E2a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	4.24	1.23	13.33
12	ER3a	ExonRegion	0	21.98	10.91	16.06	10.08	13.12	1.77	35.74
13	E3_Ab	KnownBoundary	0	33.58	16.89	14.20	11.05	13.74	1.34	45.36
14	ER3b	ExonRegion	0	22.10	10.33	10.12	8.22	15.82	1.24	39.62
15	E3a_E4a	KnownJunction	1	5.51	1.42	1.55	4.44	13.99	1.66	22.59
16	ER4a	ExonRegion	0	125.51	261.33	115.84	186.02	65.20	61.12	263.17
17	E4a_E5a	KnownJunction	0	68.71	239.36	76.44	139.63	57.22	45.59	196.84
18	E4a_E6a	NovelJunction	1	20.83	30.11	24.76	55.43	0.00	11.93	53.11
19	I4	Intron	0	67.67	19.84	34.84	15.09	4.46	2.20	59.59
20	I4_AR1	ActiveIntronRegion	0	76.49	19.91	38.79	16.57	4.90	2.22	63.54
21	I4_SR1	SilentIntronRegion	0	37.93	15.33	21.70	6.27	3.37	3.37	41.85
22	I4_AR2	ActiveIntronRegion	0	40.56	19.12	23.18	8.57	3.42	2.03	44.23
23	I4_AR3	ActiveIntronRegion	0	51.41	20.07	26.93	12.86	2.68	2.45	51.11
24	I4_AR4	ActiveIntronRegion	0	31.70	23.04	18.65	12.22	2.47	1.19	47.75
25	ER5a	ExonRegion	0	75.21	238.48	71.13	137.77	40.71	35.65	182.84
26	E5a_E6a	KnownJunction	0	104.15	276.11	106.99	147.89	80.15	44.46	206.29
27	ER6a	ExonRegion	0	154.37	334.96	153.89	219.74	84.55	65.48	267.43
28	E6a_E7a	KnownJunction	0	185.88	344.00	173.52	253.90	76.30	82.30	291.60
29	ER7a	ExonRegion	0	170.93	402.22	196.17	295.16	96.75	81.79	394.81
30	E7a_E8a	KnownJunction	0	175.14	361.71	204.92	297.65	104.75	76.46	400.95
31	ER8a	ExonRegion	0	187.65	365.30	168.89	255.62	85.27	82.33	378.67
32	E8a_E9a	KnownJunction	0	210.96	457.25	202.02	337.91	137.53	119.82	546.86
33	ER9a	ExonRegion	0	218.51	506.63	212.28	342.86	140.57	98.84	576.05
34	E9a_E10a	KnownJunction	0	219.06	459.15	192.13	283.78	115.06	60.67	484.53
35	E9a_E11a	NovelJunction	0	1.90	26.06	15.29	41.83	1.80	10.85	12.90
36	E9a_E12a	NovelJunction	1	17.06	40.20	14.90	24.03	0.00	12.30	90.82
37	E9a_E13a	NovelJunction	1	5.11	19.89	7.39	42.67	0.00	16.11	27.47
38	ER10a	ExonRegion	0	203.95	492.16	201.04	278.47	120.70	71.06	467.18
39	E10a_E11a	KnownJunction	0	229.45	410.28	217.24	222.82	133.57	66.03	381.86
40	E10a_E12a	NovelJunction	1	3.29	13.32	1.78	4.20	6.25	3.00	59.45
41	E10a_E13a	NovelJunction	0	1.62	7.78	0.50	12.79	0.90	2.44	1.66
42	I10	Intron	1	41.96	53.51	30.84	27.84	8.78	3.57	74.31
43	I10_AR1	ActiveIntronRegion	1	42.28	53.94	31.10	28.04	8.85	3.60	74.93
44	E11_Aa	NovelBoundary	0	108.79	71.43	109.19	39.28	6.39	9.49	116.97
45	ER11a	ExonRegion	0	273.00	489.61	245.74	305.34	193.01	79.97	475.77
46	E11_Da	NovelBoundary	0	41.07	41.25	33.15	21.84	3.11	5.47	86.72
47	E11a_E12a	KnownJunction	0	254.59	274.51	269.86	186.06	184.68	46.18	409.64
48	E11a_E13a	NovelJunction	0	68.38	140.76	81.39	160.68	7.49	52.42	56.32
49	I11	Intron	1	92.98	73.08	55.54	31.53	14.74	5.09	120.54
50	I11_AR1	ActiveIntronRegion	1	93.24	73.29	55.70	31.63	14.78	5.10	120.88
51	E12_Aa	NovelBoundary	0	56.61	47.58	39.81	19.64	3.07	8.39	92.70
52	ER12a	ExonRegion	0	286.64	450.96	272.20	275.43	175.73	70.57	623.36
53	E12a_E13a	KnownJunction	0	384.79	482.95	399.68	332.84	136.36	101.33	920.85
54	E13_Aa	NovelBoundary	0	76.34	39.56	42.38	23.35	0.88	2.57	80.40
55	ER13a	ExonRegion	0	446.02	525.73	369.71	402.41	221.28	103.93	763.90
56	E13_Da	NovelBoundary	0	81.86	36.86	66.78	36.00	7.22	13.19	91.84
57	E13a_E14a	KnownJunction	0	252.72	352.12	185.41	276.84	102.79	81.82	449.33
58	I13	Intron	0	102.15	45.76	57.61	42.28	23.87	8.77	113.37
59	I13_AR1	ActiveIntronRegion	0	139.80	45.69	72.17	23.62	27.49	9.62	127.38
60	I13_SR1	SilentIntronRegion	1	110.15	52.94	62.06	57.99	27.30	7.41	123.84
61	I13_AR2	ActiveIntronRegion	1	31.61	33.34	28.10	42.51	12.40	10.11	74.48
62	ER14a	ExonRegion	0	215.32	265.98	161.76	226.17	90.81	64.79	334.79
63	ER14b	ExonRegion	0	24.28	26.67	19.12	34.12	10.86	2.67	22.54
64	IG9	Intergenic	0	51.97	49.88	33.55	62.65	15.99	7.75	32.68
65	IG9_AR3	ActiveIntergenicRegion	0	37.68	29.84	19.92	38.31	8.78	4.61	23.02
66	IG9_SR1	SilentIntergenicRegion	0	73.26	68.83	47.58	86.73	23.29	10.49	44.97
67	IG9_AR2	ActiveIntergenicRegion	0	53.32	55.77	36.34	70.23	17.19	8.46	34.62
68	IG9_AR1	ActiveIntergenicRegion	0	14.45	20.17	12.73	21.70	5.83	4.41	10.93