Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	WDR54	Gene	0	26.77	21.85	17.05	32.90	139.09	8.44	82.45
2	409791	Transcript	0	1.42	0.00	0.21	0.62	9.38	0.61	4.43
3	393990	Transcript	0	7.40	4.18	4.28	8.04	8.93	2.20	4.85
4	348227	Transcript	1	9.13	2.84	6.58	3.52	285.27	6.53	92.35
5	IG8_SR1	SilentIntergenicRegion	0	10.06	4.45	4.99	4.96	2.92	1.00	4.99
6	IG8_AR2	ActiveIntergenicRegion	0	4.79	6.87	5.37	8.87	6.18	0.50	6.82
7	ER1a	ExonRegion	0	2.40	0.00	0.64	1.87	17.41	0.69	3.50
8	ER1b	ExonRegion	0	3.84	0.17	2.03	5.70	69.36	3.68	15.76
9	ER1c	ExonRegion	1	12.45	1.47	10.03	15.33	433.05	5.71	84.86
10	E1_Da	KnownBoundary	0	5.12	2.36	9.23	10.10	12.63	1.42	4.31
11	E1a_E1d	KnownJunction	1	7.81	0.00	5.62	7.04	66.97	2.57	81.99
12	E1a_E1e	KnownJunction	0	1.85	0.00	0.00	0.00	6.75	0.00	9.20
13	ER1d	ExonRegion	0	8.97	3.96	5.55	9.49	8.17	1.88	6.78
14	E1_Ad	KnownBoundary	0	10.26	1.63	4.81	10.29	8.76	1.61	9.10
15	ER1e	ExonRegion	1	16.71	9.55	9.22	26.26	168.25	6.25	96.18
16	E1_Db	KnownBoundary	1	3.97	13.50	4.04	3.60	6.20	0.00	5.10
17	E1b_E1e	KnownJunction	1	10.45	5.67	7.54	0.00	503.57	10.48	102.71
18	ER1f	ExonRegion	1	13.22	8.58	6.68	14.61	18.63	4.71	5.28
19	E1_Ae	KnownBoundary	0	13.69	7.07	10.45	5.45	12.98	6.14	9.30
20	ER1g	ExonRegion	1	16.84	6.21	11.89	3.84	245.92	7.77	121.63
21	E1_Dc	NovelBoundary	0	13.13	11.48	7.00	10.86	1.18	2.73	8.00
22	E1c_E2a	KnownJunction	1	5.44	2.26	2.14	1.41	172.41	2.68	132.44
23	I1	Intron	0	10.74	3.23	4.05	3.33	0.91	2.04	3.38
24	I1_AR1	ActiveIntronRegion	0	10.84	3.26	4.09	3.36	0.92	2.06	3.41
25	E2_Aa	NovelBoundary	1	19.48	6.86	7.65	8.80	1.18	1.07	2.75
26	ER2a	ExonRegion	1	4.89	7.22	4.21	1.15	165.61	4.06	149.61
27	E2_Da	NovelBoundary	1	10.28	3.23	6.32	15.60	1.04	0.00	7.87
28	E2a_E3a	KnownJunction	1	2.27	9.51	7.39	0.00	181.45	5.71	137.91
29	E2a_E4a	NovelJunction	0	0.00	1.00	0.00	1.25	9.18	0.00	1.35
30	E3_Aa	NovelBoundary	1	36.25	5.31	10.32	7.07	5.49	0.00	6.00
31	ER3a	ExonRegion	1	8.27	6.39	7.20	1.85	196.91	4.63	148.14
32	E3_Da	NovelBoundary	1	10.11	7.80	4.94	10.59	2.10	0.00	5.36
33	E3a_E4a	KnownJunction	1	12.15	3.26	9.79	2.74	226.77	4.05	156.38
34	I3	Intron	1	28.25	8.56	10.22	14.04	3.43	2.02	10.11
35	I3_AR1	ActiveIntronRegion	1	28.42	8.61	10.28	14.12	3.46	2.03	10.17
36	E4_Aa	NovelBoundary	1	15.39	17.68	2.76	16.96	8.71	0.00	8.86
37	ER4a	ExonRegion	1	25.14	7.40	12.53	13.17	317.27	6.47	166.03
38	E4_Da	NovelBoundary	1	49.50	10.40	12.72	12.98	3.09	1.05	11.52
39	E4a_E5a	KnownJunction	1	13.10	5.81	7.66	0.00	293.69	4.85	155.42
40	E4a_E6a	KnownJunction	0	0.00	0.00	0.63	0.00	0.00	0.00	2.48
41	I4	Intron	0	39.26	59.23	22.96	76.28	16.48	11.98	31.93
42	I4_SR1	SilentIntronRegion	1	13.86	3.01	3.07	2.07	1.80	0.00	1.13
43	I4_AR2	ActiveIntronRegion	0	57.99	95.17	36.05	123.33	26.06	19.50	51.51
44	E5_Aa	NovelBoundary	1	137.74	149.27	83.02	215.48	39.51	30.26	93.20
45	ER5a	ExonRegion	0	67.25	59.08	39.35	74.24	326.08	23.78	219.97
46	E5_Da	NovelBoundary	1	85.10	104.14	50.60	207.76	44.38	18.30	73.78
47	E5a_E6a	KnownJunction	1	18.18	5.36	7.30	1.68	242.17	8.31	148.65
48	I5	Intron	1	32.41	33.99	25.47	56.10	18.97	13.11	29.28
49	I5_AR1	ActiveIntronRegion	1	32.96	34.52	25.92	56.99	19.28	13.35	29.76
50	E6_Aa	NovelBoundary	0	80.66	98.75	64.71	143.47	34.00	32.03	82.43
51	ER6a	ExonRegion	0	60.03	66.34	45.38	100.34	305.35	19.47	192.26
52	E6_Da	NovelBoundary	0	62.54	97.99	52.32	130.69	22.68	29.43	75.64
53	E6a_E7a	KnownJunction	1	16.59	7.12	6.50	4.50	343.44	6.35	121.07
54	I6	Intron	1	43.71	54.41	34.72	86.57	15.62	14.51	40.97
55	I6_AR1	ActiveIntronRegion	1	44.16	54.97	35.07	87.44	15.78	14.66	41.38
56	E7_Aa	NovelBoundary	0	63.00	81.97	46.49	121.99	8.74	40.82	46.96
57	ER7a	ExonRegion	0	21.48	15.76	18.14	21.63	230.05	12.57	123.65
58	E7_Da	NovelBoundary	0	45.53	70.01	35.49	82.28	10.37	13.91	37.88
59	E7a_E8a	KnownJunction	1	4.26	4.99	9.61	2.90	120.15	3.54	107.08
60	E7a_E8b	KnownJunction	0	0.00	0.00	0.00	0.00	3.99	1.13	0.60
61	I7	Intron	1	19.43	9.25	10.21	15.43	15.12	0.00	8.32
62	I7_AR1	ActiveIntronRegion	1	19.78	9.40	10.40	15.67	15.48	0.00	8.43
63	E8_Aa	NovelBoundary	0	79.86	91.95	54.31	119.31	7.68	21.28	65.24
64	ER8a	ExonRegion	1	57.12	59.12	36.95	82.26	115.32	9.70	104.12
65	E8_Ab	KnownBoundary	1	111.24	108.03	62.51	162.93	95.14	22.94	108.16
66	ER8b	ExonRegion	0	101.41	97.35	65.78	125.97	118.90	25.54	127.25
67	IG9	Intergenic	0	51.97	49.88	33.55	62.65	15.99	7.75	32.68
68	IG9_AR1	ActiveIntergenicRegion	0	14.45	20.17	12.73	21.70	5.83	4.41	10.93
69	IG9_AR2	ActiveIntergenicRegion	0	53.32	55.77	36.34	70.23	17.19	8.46	34.62
70	IG9_SR1	SilentIntergenicRegion	0	73.26	68.83	47.58	86.73	23.29	10.49	44.97
71	IG9_AR3	ActiveIntergenicRegion	0	37.68	29.84	19.92	38.31	8.78	4.61	23.02