Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PELI1	Gene	0	471.45	373.57	171.49	212.54	119.02	144.43	64.92
2	358912	Transcript	0	206.74	491.28	74.75	252.71	64.42	177.36	38.25
3	394397	Transcript	0	31.18	10.89	14.47	4.25	7.17	5.40	4.69
4	IG50_AR49	ActiveIntergenicRegion	0	4.00	14.20	0.90	15.03	1.22	5.15	1.57
5	IG50_SR43	SilentIntergenicRegion	0	2.80	6.26	1.42	12.72	1.62	7.72	0.71
6	IG50_AR48	ActiveIntergenicRegion	0	3.45	15.11	2.39	12.54	0.23	9.39	1.64
7	IG50_SR42	SilentIntergenicRegion	0	17.61	34.94	5.43	32.54	1.54	15.41	6.97
8	IG50_AR47	ActiveIntergenicRegion	0	16.87	30.45	8.37	35.87	0.57	14.47	2.39
9	IG50_SR41	SilentIntergenicRegion	0	5.09	6.44	3.60	10.67	0.79	6.06	0.74
10	IG50_AR35	ActiveIntergenicRegion	0	2.29	10.08	2.71	9.84	4.68	3.12	0.93
11	IG50_AR34	ActiveIntergenicRegion	0	1.40	7.45	0.61	9.42	3.26	0.37	0.00
12	IG50_SR32	SilentIntergenicRegion	0	3.35	9.07	4.19	6.25	1.04	0.68	0.38
13	IG50_AR33	ActiveIntergenicRegion	0	3.99	5.94	6.36	8.75	1.66	3.29	0.76
14	IG50_AR32	ActiveIntergenicRegion	0	1.70	8.31	1.98	5.07	1.48	3.28	0.32
15	IG50_AR30	ActiveIntergenicRegion	0	1.14	6.18	1.70	8.59	0.13	1.83	0.29
16	IG50_SR25	SilentIntergenicRegion	0	0.44	0.32	0.06	0.02	10.48	0.01	0.01
17	IG50_AR26	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	20.44	0.00	0.00
18	IG50_SR24	SilentIntergenicRegion	0	0.00	0.00	0.00	0.00	16.48	0.00	0.00
19	IG50_AR24	ActiveIntergenicRegion	0	3.68	8.09	1.50	1.46	34.46	2.54	2.43
20	IG50_SR22	SilentIntergenicRegion	0	0.73	0.01	0.00	0.00	9.36	0.00	0.00
21	IG50_AR23	ActiveIntergenicRegion	0	0.38	0.00	0.00	0.00	11.07	0.00	0.00
22	IG50_AR21	ActiveIntergenicRegion	0	0.28	0.00	0.54	0.00	8.37	0.00	0.00
23	IG50_SR20	SilentIntergenicRegion	0	0.24	0.29	0.08	0.00	8.15	0.00	0.00
24	IG50_AR19	ActiveIntergenicRegion	0	1.43	0.44	0.39	0.46	10.09	0.00	0.43
25	IG50_SR14	SilentIntergenicRegion	0	0.38	1.03	0.13	0.05	22.07	0.37	0.31
26	IG50_AR9	ActiveIntergenicRegion	0	0.00	0.00	0.48	0.00	8.53	0.00	0.00
27	ER1a	ExonRegion	0	98.93	300.28	29.12	163.55	24.99	100.63	17.19
28	E1a_E2b	KnownJunction	0	314.56	682.27	120.38	341.86	103.85	254.09	59.32
29	E1a_E4a	NovelJunction	0	1.67	5.02	0.53	3.36	0.00	13.86	0.00
30	ER2a	ExonRegion	0	37.77	7.20	14.04	3.51	8.67	2.21	1.96
31	E2_Ab	KnownBoundary	0	72.00	5.44	28.45	6.64	0.99	5.95	2.48
32	ER2b	ExonRegion	0	537.54	1032.83	248.83	524.50	193.64	384.22	116.74
33	E2_Da	NovelBoundary	1	188.81	78.74	54.45	19.45	16.74	15.95	8.14
34	E2a_E3a	KnownJunction	1	499.70	1090.92	251.94	614.10	213.10	439.86	144.66
35	E2a_E4a	NovelJunction	0	8.78	34.02	2.97	11.81	3.37	15.33	0.00
36	E2a_E5a	NovelJunction	0	12.92	13.56	9.30	7.10	0.00	14.74	0.79
37	I2	Intron	0	179.82	70.36	54.78	27.61	13.79	18.64	8.32
38	I2_AR1	ActiveIntronRegion	0	188.01	55.07	53.05	18.88	17.86	11.18	7.53
39	I2_SR2	SilentIntronRegion	0	99.17	24.51	26.67	8.65	7.32	4.72	2.59
40	I2_AR2	ActiveIntronRegion	0	210.18	89.44	64.92	36.44	15.05	24.48	10.44
41	E3_Aa	NovelBoundary	1	133.17	88.09	61.25	38.23	12.19	15.76	6.92
42	ER3a	ExonRegion	0	705.17	1236.96	320.13	649.55	208.92	427.60	179.01
43	E3a_E4a	KnownJunction	0	612.55	1034.83	241.00	596.60	262.48	331.38	161.06
44	I3	Intron	1	182.90	41.66	69.65	19.90	18.11	18.86	4.33
45	I3_AR1	ActiveIntronRegion	1	153.47	44.83	66.66	21.78	15.71	23.27	5.36
46	I3_SR1	SilentIntronRegion	1	136.05	35.87	59.43	14.92	16.13	13.39	2.98
47	I3_AR2	ActiveIntronRegion	1	250.81	42.39	80.64	21.44	22.31	17.90	4.17
48	E4_Aa	NovelBoundary	1	220.52	59.06	84.51	31.91	42.33	16.72	9.01
49	ER4a	ExonRegion	0	782.90	1092.11	350.65	587.33	315.48	347.58	179.33
50	E4a_E5a	KnownJunction	0	911.77	1097.23	415.79	521.67	308.49	363.22	199.35
51	I4	Intron	1	94.62	18.36	38.26	9.70	4.17	8.27	2.90
52	I4_AR1	ActiveIntronRegion	1	109.92	26.41	41.78	14.79	5.97	9.05	2.91
53	I4_SR2	SilentIntronRegion	1	131.99	12.51	52.75	10.31	2.21	1.43	3.89
54	I4_AR2	ActiveIntronRegion	1	96.54	20.00	41.91	11.46	4.00	9.01	2.84
55	E5_Aa	NovelBoundary	1	310.53	6.07	151.15	4.25	4.26	4.58	4.20
56	ER5a	ExonRegion	0	828.73	1118.59	384.08	553.79	286.06	356.65	164.00
57	E5a_E6a	KnownJunction	0	903.79	1077.00	338.58	584.11	338.83	337.33	134.16
58	ER6a	ExonRegion	0	1427.09	1347.23	467.17	750.93	426.40	426.71	205.59
59	E6a_E7a	KnownJunction	0	1926.04	1497.52	537.49	851.88	493.19	476.47	203.79
60	ER7a	ExonRegion	0	1100.07	733.00	388.54	434.99	257.62	306.78	141.60
61	ER7b	ExonRegion	0	24.59	14.58	14.90	4.99	5.67	8.58	7.42
62	IG49_AR4	ActiveIntergenicRegion	0	17.38	1.13	6.30	2.81	0.90	2.46	0.46
63	IG49_AR3	ActiveIntergenicRegion	0	14.88	3.07	5.59	1.11	0.49	0.55	0.19
64	IG49_SR2	SilentIntergenicRegion	0	10.02	1.06	2.69	2.06	0.11	1.49	0.42
65	IG49_AR2	ActiveIntergenicRegion	0	10.48	3.68	1.49	5.61	0.00	5.16	0.14