Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AHSA2	Gene	0	64.27	29.96	41.97	37.11	50.59	48.83	51.53
2	357022	Transcript	0	17.02	5.81	11.62	10.66	14.05	19.11	7.08
3	403692	Transcript	0	25.35	8.42	15.51	10.37	9.35	10.34	14.66
4	394457	Transcript	0	0	0	0	0	0	0	0
5	389584	Transcript	0	10.41	2.45	6.83	2.69	17.98	3.88	10.87
6	394460	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	409615	Transcript	0	51.66	0.00	48.72	0.00	0.69	0.26	0.67
8	410073	Transcript	0	0.56	0.03	0.03	0.02	3.26	0.00	2.52
9	IG23_AR1	ActiveIntergenicRegion	0	19.68	2.16	16.90	1.52	36.09	7.10	31.59
10	ER1a	ExonRegion	0	0.94	0.00	0.47	0.43	0.53	0.54	1.20
11	ER1b	ExonRegion	0	5.23	4.53	3.62	5.42	2.93	9.64	7.55
12	E1_Ac	KnownBoundary	0	4.47	4.44	3.75	7.67	0.00	11.66	9.57
13	E1_Ad	KnownBoundary	0	1.60	2.89	0.00	2.71	2.86	1.66	6.49
14	ER1c	ExonRegion	1	3.84	7.53	3.39	10.10	2.51	12.26	12.14
15	ER1d	ExonRegion	0	5.49	6.55	1.73	8.11	2.21	5.71	7.26
16	E1_Da	KnownBoundary	0	6.66	4.89	2.57	6.39	0.00	11.58	4.03
17	E1a_E1e	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	ER1e	ExonRegion	0	36.64	32.95	24.92	35.64	30.21	52.58	39.53
19	E1_Db	KnownBoundary	0	81.46	47.03	53.06	50.69	88.11	79.54	104.42
20	E1b_E1e	KnownJunction	1	15.20	4.89	5.59	13.60	5.12	37.41	1.78
21	ER1f	ExonRegion	0	96.83	55.59	70.16	54.85	97.15	64.50	128.20
22	E1_Ae	KnownBoundary	0	90.49	33.36	43.07	39.93	75.04	51.29	67.67
23	ER1g	ExonRegion	0	139.84	63.09	88.15	95.49	105.87	132.19	102.00
24	E1c_E2a	KnownJunction	0	174.84	89.35	111.23	146.05	140.07	196.50	132.47
25	ER2a	ExonRegion	0	226.48	90.08	148.82	152.58	163.19	212.94	148.82
26	E2a_E5c	KnownJunction	0	230.47	100.12	130.73	158.56	160.84	220.67	121.33
27	E2b_E3a	KnownJunction	0	11.98	1.47	9.70	0.00	11.25	1.29	9.80
28	ER2b	ExonRegion	0	11.72	1.52	11.52	0.00	11.14	1.23	12.65
29	E3_Aa	NovelBoundary	0	14.95	2.99	11.98	13.19	10.95	11.77	10.28
30	ER3a	ExonRegion	0	19.94	1.65	9.09	3.50	19.71	4.80	20.49
31	E3a_E5c	KnownJunction	1	15.32	1.60	5.58	1.22	22.80	2.65	23.33
32	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	I4	Intron	0	7.76	1.07	15.10	4.93	3.22	2.42	6.35
34	I4_AR1	ActiveIntronRegion	0	7.81	1.07	15.18	4.95	3.24	2.44	6.39
35	ER5a	ExonRegion	0	1.10	0.00	0.87	0.00	1.39	0.53	1.35
36	ER5b	ExonRegion	0	126.02	49.20	71.46	77.94	100.42	115.24	79.94
37	ER5c	ExonRegion	0	178.75	81.57	121.66	133.67	146.70	169.68	128.53
38	E5a_E6a	KnownJunction	0	152.43	55.64	113.07	96.53	118.08	136.06	99.35
39	E5a_E6b	KnownJunction	0	0.60	0.00	0.00	0.00	0.00	0.00	0.00
40	I5_AR1	ActiveIntronRegion	0	8.59	4.41	12.36	4.56	3.13	5.21	5.92
41	I5_AR2	ActiveIntronRegion	1	6.39	2.04	11.98	10.95	2.44	5.75	7.82
42	E6_Ab	NovelBoundary	0	88.91	29.29	56.29	55.48	50.07	61.99	45.01
43	ER6a	ExonRegion	0	159.94	63.35	108.87	109.91	126.45	131.36	108.32
44	ER6b	ExonRegion	0	181.01	61.01	96.10	90.44	125.23	109.54	114.46
45	E6_Da	NovelBoundary	0	20.91	26.46	28.53	21.70	101.09	9.33	26.67
46	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	3.43	0.00	0.00
47	E6a_E8a	KnownJunction	0	3.17	2.97	0.00	2.82	8.44	6.91	4.47
48	E6a_E9a	KnownJunction	0	178.88	59.87	84.68	84.52	59.08	110.44	104.58
49	I6	Intron	0	28.25	13.00	27.17	9.90	70.77	5.45	18.37
50	I6_AR1	ActiveIntronRegion	0	28.50	13.12	27.39	9.99	71.32	5.48	18.52
51	E7a_E9a	KnownJunction	0	0.85	0.00	0.00	0.00	3.00	0.00	4.16
52	ER7a	ExonRegion	0	0.83	0.09	0.10	0.05	3.36	0.00	3.40
53	I7	Intron	0	10.42	5.67	20.78	2.49	74.98	4.89	5.61
54	I7_AR1	ActiveIntronRegion	1	10.58	5.77	21.06	2.54	76.14	4.97	5.70
55	E8_Aa	NovelBoundary	0	42.74	6.33	40.87	13.09	129.70	13.11	32.59
56	ER8a	ExonRegion	0	26.77	8.53	18.83	9.21	70.61	9.76	19.60
57	E8_Da	NovelBoundary	0	26.60	17.92	24.62	28.47	76.63	14.02	33.48
58	E8a_E9a	KnownJunction	0	4.14	4.28	6.77	7.42	17.84	8.31	7.45
59	I8	Intron	1	30.54	18.50	28.53	19.78	88.27	6.38	29.41
60	I8_AR1	ActiveIntronRegion	1	30.69	18.59	28.67	19.89	88.71	6.41	29.57
61	E9_Aa	NovelBoundary	1	52.46	9.46	39.07	54.70	87.53	18.71	21.44
62	ER9a	ExonRegion	0	272.03	73.97	139.85	95.85	125.84	134.22	130.69
63	E9_Da	NovelBoundary	0	10.46	9.56	15.52	7.69	16.28	1.42	14.06
64	E9a_E10a	KnownJunction	0	213.38	71.38	117.66	83.03	139.79	121.91	105.57
65	E9a_E11a	KnownJunction	1	27.22	5.88	12.49	10.16	2.07	10.88	6.74
66	I9	Intron	0	6.09	2.45	5.69	2.51	15.46	4.18	4.62
67	I9_AR1	ActiveIntronRegion	0	6.20	2.50	5.79	2.54	15.71	4.25	4.70
68	E10_Aa	NovelBoundary	1	17.69	11.01	16.21	38.28	12.73	0.00	9.86
69	ER10a	ExonRegion	0	192.30	68.01	108.35	74.37	117.19	128.87	95.66
70	E10_Da	KnownBoundary	0	65.12	17.94	42.51	30.21	69.50	46.60	28.26
71	ER10b	ExonRegion	1	46.71	17.43	36.74	27.08	40.13	27.52	21.93
72	E10_Db	KnownBoundary	0	28.16	12.37	27.73	17.28	42.72	26.88	23.37
73	ER10c	ExonRegion	0	34.93	12.55	28.79	17.96	36.50	19.37	18.27
74	E10_Dc	NovelBoundary	1	69.01	30.45	74.35	71.25	44.05	90.96	30.84
75	E11_Aa	NovelBoundary	1	487.41	162.83	513.87	340.72	366.33	347.00	181.72
76	ER11a	ExonRegion	1	25.29	3.51	10.56	6.97	2.00	8.96	5.69
77	E11_Da	KnownBoundary	1	255.97	72.43	221.88	152.85	140.71	177.07	84.18
78	E11a_E11b	KnownJunction	0	102.23	0.00	96.57	0.00	0.00	0.00	0.00
79	ER11b	ExonRegion	0	8.58	0.84	3.42	0.98	1.62	0.86	2.08
80	E11_Ab	KnownBoundary	1	3.00	11.61	11.75	43.91	2.72	23.16	13.93
81	ER11c	ExonRegion	0	0.49	0.00	0.15	0.12	0.82	0.16	0.23
82	E11_Db	KnownBoundary	1	16.26	7.01	40.62	30.99	114.25	23.80	25.18
83	ER11d	ExonRegion	0	42.12	16.00	27.59	19.76	17.08	19.82	27.24