Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PUS10	Gene	0	59.47	7.03	24.54	11.30	11.63	21.50	13.46
2	316752	Transcript	0	79.22	9.99	34.05	13.42	5.15	36.11	11.10
3	398658	Transcript	0	26.62	5.83	19.31	3.35	14.68	2.54	10.92
4	407787	Transcript	0	0	0	0	0	0	0	0
5	ER1a	ExonRegion	0	24.93	5.15	10.28	0.00	1.37	0.46	3.60
6	E1a_E3a	KnownJunction	0	45.13	8.20	19.39	0.00	1.13	1.50	9.42
7	E2_Aa	NovelBoundary	0	5.82	2.99	5.22	3.33	7.52	2.30	2.11
8	ER2a	ExonRegion	0	1.40	0.46	0.02	0.00	0.83	0.00	0.54
9	E2a_E3a	KnownJunction	0	4.67	1.26	0.73	0.00	0.88	0.00	3.54
10	ER3a	ExonRegion	0	50.21	8.57	25.13	2.37	10.51	3.17	17.37
11	E3a_E4a	KnownJunction	1	27.89	6.96	22.53	2.76	12.38	0.00	15.59
12	E3a_E5a	KnownJunction	0	34.23	1.63	16.34	0.00	2.35	0.00	13.17
13	ER4a	ExonRegion	0	25.35	4.70	16.09	3.94	16.98	5.07	6.25
14	ER5a	ExonRegion	0	38.01	2.73	15.95	0.37	5.08	1.95	13.54
15	E5a_E6a	KnownJunction	1	29.51	4.12	18.31	0.00	5.23	4.02	14.19
16	ER6a	ExonRegion	0	35.60	3.52	16.68	0.00	6.15	2.18	14.53
17	E6a_E7a	KnownJunction	1	23.33	0.00	10.39	0.00	8.21	1.66	10.79
18	ER7a	ExonRegion	0	48.72	1.21	14.90	0.89	11.87	1.23	15.75
19	E7a_E8a	KnownJunction	0	55.48	1.47	14.07	1.41	11.80	0.00	12.44
20	ER8a	ExonRegion	0	79.67	3.40	21.39	6.50	9.99	2.55	17.21
21	E8a_E9a	KnownJunction	0	70.83	2.60	17.37	7.18	5.58	0.00	16.19
22	ER9a	ExonRegion	0	86.56	1.78	18.49	3.48	10.36	0.00	18.68
23	E9_Da	NovelBoundary	0	1.03	1.60	1.37	4.14	0.00	12.17	2.15
24	E9a_E10a	KnownJunction	0	76.91	0.00	17.88	0.00	16.37	0.00	15.81
25	E10_Aa	NovelBoundary	0	2.00	4.05	2.50	1.08	0.00	9.33	0.00
26	ER10a	ExonRegion	0	68.57	0.03	18.26	3.01	12.39	0.00	13.02
27	E10a_E11a	KnownJunction	0	49.05	0.00	14.18	2.79	2.77	0.00	8.54
28	I10	Intron	0	4.37	3.29	2.74	5.97	0.02	11.10	0.50
29	I10_SR1	SilentIntronRegion	0	4.59	3.44	2.58	6.26	0.00	12.42	0.52
30	E11_Aa	NovelBoundary	0	9.85	5.60	3.13	10.51	0.00	23.13	0.00
31	ER11a	ExonRegion	0	59.13	0.00	20.37	4.58	10.05	0.75	14.62
32	E11_Da	NovelBoundary	0	3.62	4.52	8.71	5.55	0.00	16.75	1.78
33	E11a_E12a	KnownJunction	0	48.88	0.00	15.18	4.06	6.71	1.66	20.48
34	I11	Intron	0	4.23	3.43	2.09	5.91	0.06	9.00	0.38
35	I11_SR1	SilentIntronRegion	0	4.24	3.44	2.10	5.93	0.06	9.02	0.38
36	E12_Aa	NovelBoundary	0	6.26	4.12	8.26	6.96	0.95	14.98	0.00
37	ER12a	ExonRegion	0	43.31	0.58	17.67	3.84	5.10	2.12	18.85
38	E12_Da	NovelBoundary	0	2.85	1.23	2.00	10.97	0.00	13.91	1.46
39	E12a_E13a	KnownJunction	1	36.28	1.63	24.42	2.76	6.64	1.66	17.47
40	I12	Intron	0	4.67	5.18	2.71	8.89	0.00	15.06	0.55
41	I12_SR1	SilentIntronRegion	0	4.67	5.19	2.71	8.90	0.00	15.09	0.55
42	E13_Aa	NovelBoundary	0	7.76	6.49	2.21	6.39	0.00	19.86	0.87
43	ER13a	ExonRegion	0	38.31	1.85	15.69	8.64	6.88	9.50	16.03
44	E13_Da	NovelBoundary	0	7.46	9.17	3.23	8.40	0.00	14.12	0.00
45	E13a_E14a	KnownJunction	0	39.97	0.00	17.82	0.00	7.17	1.50	15.79
46	I13	Intron	0	5.00	5.48	2.95	11.35	0.03	16.08	0.39
47	I13_SR1	SilentIntronRegion	0	5.01	5.48	2.95	11.36	0.03	16.09	0.39
48	ER14a	ExonRegion	0	40.43	1.49	18.36	0.00	5.16	1.87	16.68
49	E14_Da	NovelBoundary	0	5.16	5.62	4.83	12.16	0.00	13.45	1.30
50	E14a_E15a	KnownJunction	0	30.23	2.34	15.28	0.00	4.50	1.66	11.39
51	I14	Intron	0	6.06	4.33	2.58	9.01	0.41	14.15	0.82
52	I14_SR1	SilentIntronRegion	0	6.07	4.34	2.59	9.03	0.41	14.19	0.82
53	E15_Aa	NovelBoundary	0	5.71	1.63	3.65	19.78	0.00	22.40	0.75
54	ER15a	ExonRegion	0	46.53	1.25	13.49	1.86	6.37	4.17	12.57
55	E15_Da	NovelBoundary	0	5.56	2.84	3.61	18.45	0.00	14.36	0.69
56	E15a_E16a	KnownJunction	0	61.34	0.00	14.15	1.68	9.87	0.00	11.28
57	E16_Aa	NovelBoundary	0	5.16	0.00	2.70	18.39	0.00	8.28	0.00
58	ER16a	ExonRegion	0	62.53	1.50	18.30	0.80	10.04	0.00	13.72
59	E16a_E17a	KnownJunction	0	39.25	2.39	16.64	0.00	9.73	0.00	17.33
60	E17_Aa	NovelBoundary	1	5.17	2.71	7.20	0.00	0.00	21.98	0.60
61	ER17a	ExonRegion	0	54.92	7.18	17.32	11.01	8.95	9.79	20.23
62	E17_Da	NovelBoundary	0	15.56	10.82	7.50	8.97	0.00	27.47	0.75
63	E17a_E18a	KnownJunction	0	46.21	1.18	11.61	0.00	9.24	1.66	16.01
64	I17	Intron	0	9.23	3.74	3.91	7.81	0.11	13.96	0.45
65	I17_SR1	SilentIntronRegion	0	9.01	3.37	3.77	6.68	0.06	10.81	0.47
66	I17_AR1	ActiveIntronRegion	0	11.54	5.36	5.34	12.03	0.27	28.22	0.64
67	I17_SR2	SilentIntronRegion	0	6.78	3.71	2.43	9.17	0.17	13.15	0.00
68	E18_Aa	NovelBoundary	0	8.85	11.06	5.63	21.92	0.00	45.00	0.00
69	ER18a	ExonRegion	0	42.84	6.39	13.69	16.86	10.48	15.08	17.89
70	E18_Da	NovelBoundary	1	11.52	8.01	10.56	12.60	0.88	36.53	0.00
71	E18a_E19a	KnownJunction	0	35.07	1.02	12.24	1.68	6.50	1.61	14.82
72	I18	Intron	0	11.89	4.04	7.08	9.38	0.18	15.43	0.67
73	I18_SR1	SilentIntronRegion	0	2.75	1.09	2.63	10.09	0.00	11.51	0.00
74	I18_AR1	ActiveIntronRegion	0	10.74	4.84	5.65	10.02	0.50	15.67	1.05
75	I18_AR2	ActiveIntronRegion	0	15.91	8.44	8.77	9.54	0.00	24.55	1.34
76	I18_SR2	SilentIntronRegion	0	14.41	3.84	8.36	8.38	0.14	13.99	0.65
77	I18_AR3	ActiveIntronRegion	0	6.66	3.29	5.97	10.43	0.19	24.01	0.50
78	I18_SR3	SilentIntronRegion	0	12.69	5.52	6.76	11.83	0.00	11.20	0.60
79	E19_Aa	NovelBoundary	1	20.19	12.51	5.86	16.55	1.08	19.83	0.00
80	ER19a	ExonRegion	0	47.38	2.72	18.51	2.03	8.41	8.95	13.62
81	E19_Da	NovelBoundary	0	10.82	3.84	8.65	18.58	0.00	22.14	3.86
82	E19a_E20a	KnownJunction	0	37.57	0.00	18.08	1.68	7.49	0.00	12.20
83	I19	Intron	0	33.91	11.97	17.23	23.60	0.64	61.46	2.46
84	I19_SR1	SilentIntronRegion	0	10.47	6.83	7.51	7.98	0.22	22.09	1.27
85	I19_AR1	ActiveIntronRegion	1	75.94	19.43	34.88	55.39	1.35	158.24	3.80
86	I19_SR2	SilentIntronRegion	0	66.79	21.53	30.60	40.45	1.26	81.82	5.18
87	E20_Aa	NovelBoundary	1	112.02	25.06	40.50	72.93	0.00	130.62	5.45
88	ER20a	ExonRegion	0	192.09	36.07	68.80	68.01	14.95	135.79	28.17
89	E20_Da	KnownBoundary	0	275.65	22.12	79.80	69.79	14.73	133.09	38.82
90	ER20b	ExonRegion	1	167.59	16.63	72.47	40.25	12.95	106.36	20.30
91	IG19	Intergenic	0	264.01	95.09	131.95	125.40	11.31	312.06	15.27
92	IG19_AR7	ActiveIntergenicRegion	0	100.70	20.92	39.99	20.64	6.33	54.61	13.29
93	IG19_SR7	SilentIntergenicRegion	0	57.95	14.30	25.40	10.16	4.64	31.00	7.75
94	IG19_AR6	ActiveIntergenicRegion	0	125.73	14.83	57.77	24.17	6.36	70.75	12.33
95	IG19_AR5	ActiveIntergenicRegion	0	81.24	31.38	42.21	48.54	2.42	79.74	11.98
96	IG19_SR5	SilentIntergenicRegion	0	81.68	8.61	39.24	13.32	0.88	14.36	4.39
97	IG19_AR4	ActiveIntergenicRegion	0	433.18	130.76	196.12	195.28	20.77	577.24	18.93
98	IG19_AR3	ActiveIntergenicRegion	0	494.49	229.75	248.23	290.11	23.21	710.47	23.84
99	IG19_SR3	SilentIntergenicRegion	0	56.02	18.55	50.27	30.03	3.10	58.40	2.55
100	IG19_AR2	ActiveIntergenicRegion	0	368.92	96.70	202.68	117.73	10.59	251.27	12.56
101	IG19_SR2	SilentIntergenicRegion	0	161.15	25.58	69.69	37.91	6.34	79.90	3.06
102	IG19_AR1	ActiveIntergenicRegion	0	309.38	197.86	192.22	192.07	12.57	533.99	16.20
103	IG19_SR1	SilentIntergenicRegion	0	45.49	14.82	22.08	14.22	1.62	60.07	0.54