Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PLEKHH2	Gene	0	14.20	40.69	11.05	18.64	16.49	64.73	8.55
2	405223	Transcript	0	0.85	2.23	0.47	0.78	0.76	1.64	0.54
3	405000	Transcript	0	2.67	3.13	1.05	3.36	2.42	4.88	1.03
4	282406	Transcript	0	15.88	47.88	8.12	14.08	15.87	69.22	7.49
5	ER1a	ExonRegion	0	0.68	4.18	0.00	0.00	0.00	2.59	0.67
6	ER1b	ExonRegion	0	3.42	14.13	3.99	2.79	3.75	10.48	1.82
7	E1a_E2a	KnownJunction	0	2.40	12.16	4.51	5.74	1.89	12.62	2.02
8	ER2a	ExonRegion	0	4.36	37.62	5.47	13.00	2.83	42.30	2.31
9	E2a_E3a	KnownJunction	0	0.70	1.63	0.00	1.25	1.04	9.54	0.73
10	E2a_E4a	KnownJunction	0	13.97	69.41	12.69	21.56	4.70	54.70	5.66
11	ER3a	ExonRegion	0	0.62	3.62	0.01	2.41	0.59	3.31	0.19
12	E3a_E4a	KnownJunction	0	0.00	2.26	0.00	6.01	0.90	0.00	0.80
13	ER4a	ExonRegion	0	11.08	58.14	10.81	21.48	8.83	69.49	4.02
14	E4a_E5a	KnownJunction	0	8.53	47.74	5.73	11.38	9.64	82.25	2.71
15	ER5a	ExonRegion	0	12.42	69.12	11.95	24.34	7.90	91.28	7.55
16	E5a_E6a	KnownJunction	0	17.09	57.32	11.19	24.49	9.50	88.68	8.87
17	ER6a	ExonRegion	0	19.63	75.41	14.09	26.05	8.53	92.61	9.47
18	E6a_E7a	KnownJunction	0	12.62	77.55	20.02	24.30	10.67	92.65	9.54
19	ER7a	ExonRegion	0	15.06	74.22	18.23	26.72	13.75	91.20	11.47
20	E7a_E8a	KnownJunction	0	16.64	67.28	14.05	27.04	14.25	93.42	12.07
21	E7a_E8b	KnownJunction	0	0.00	1.44	0.00	0.00	1.04	0.00	0.00
22	E8_Ab	NovelBoundary	1	10.56	0.00	7.03	0.00	0.00	1.18	0.82
23	ER8a	ExonRegion	0	18.63	72.89	13.21	23.69	14.17	90.11	12.31
24	ER8b	ExonRegion	0	33.14	90.39	19.89	41.86	19.44	119.14	10.71
25	E8a_E9a	KnownJunction	0	40.09	93.95	20.69	52.31	15.61	144.16	12.70
26	ER9a	ExonRegion	0	21.28	71.01	19.20	34.90	19.06	102.92	14.29
27	E9a_E10a	KnownJunction	0	9.10	55.20	6.98	27.12	13.19	59.44	10.15
28	I9_AR1	ActiveIntronRegion	0	0.00	8.50	2.03	7.10	0.00	7.97	2.02
29	ER10a	ExonRegion	0	9.15	48.34	9.56	34.05	11.30	55.35	8.44
30	E10a_E11a	KnownJunction	0	9.33	44.08	12.49	33.08	11.83	51.51	8.73
31	ER11a	ExonRegion	0	13.38	49.30	7.54	30.39	21.98	56.34	10.99
32	E11a_E12a	KnownJunction	0	3.76	35.18	4.44	22.78	16.90	36.66	4.69
33	E12_Aa	NovelBoundary	0	0.78	13.79	7.20	4.47	0.00	9.41	0.89
34	ER12a	ExonRegion	0	6.70	40.03	4.75	22.40	8.03	43.98	6.56
35	E12a_E13a	KnownJunction	0	6.56	45.95	10.69	23.76	11.11	37.98	6.42
36	ER13a	ExonRegion	0	7.68	37.62	10.33	27.02	11.08	52.99	7.69
37	E13a_E14a	KnownJunction	0	12.47	39.14	9.74	17.18	8.25	60.43	5.20
38	ER14a	ExonRegion	0	7.89	31.26	10.83	22.77	6.11	66.81	7.62
39	E14a_E15a	KnownJunction	0	9.61	33.05	9.77	23.98	11.50	69.36	9.30
40	ER15a	ExonRegion	0	14.03	35.69	11.83	18.39	9.85	60.98	8.80
41	E15_Da	KnownBoundary	0	0.63	0.97	1.21	0.00	1.18	0.00	0.00
42	E15a_E15b	KnownJunction	0	11.98	31.58	10.19	20.59	12.15	57.19	9.93
43	ER15b	ExonRegion	0	8.15	6.49	4.69	4.06	9.57	7.87	2.61
44	E15_Ab	KnownBoundary	0	6.43	13.71	5.46	7.23	7.77	15.76	6.75
45	ER15c	ExonRegion	0	18.52	58.29	19.58	32.89	19.11	73.40	12.31
46	E15b_E16a	KnownJunction	0	19.43	53.15	21.73	30.34	24.32	88.55	13.50
47	ER16a	ExonRegion	0	16.95	59.50	16.91	28.50	22.51	85.24	11.28
48	E16a_E17a	KnownJunction	0	14.77	49.50	11.40	20.05	15.54	62.98	7.65
49	ER17a	ExonRegion	0	16.83	64.29	13.94	32.41	23.99	85.90	11.10
50	E17a_E18a	KnownJunction	0	22.50	70.93	15.36	36.00	23.24	82.44	12.80
51	ER18a	ExonRegion	0	18.45	60.04	16.88	27.48	14.21	84.84	10.64
52	E18a_E19a	KnownJunction	0	18.24	40.90	13.77	20.94	14.32	56.84	6.55
53	ER19a	ExonRegion	0	21.08	40.68	15.71	19.94	20.35	79.38	7.92
54	E19a_E20a	KnownJunction	1	20.78	33.29	16.24	17.66	10.30	70.94	2.14
55	ER20a	ExonRegion	0	16.96	45.69	11.27	19.79	14.55	69.21	5.84
56	E20a_E21a	KnownJunction	0	18.14	45.61	8.61	23.70	18.37	48.70	7.71
57	E21_Aa	NovelBoundary	0	2.72	9.90	2.66	3.22	1.18	26.37	1.58
58	ER21a	ExonRegion	0	11.73	50.08	7.01	23.36	15.84	69.54	8.73
59	E21_Da	KnownBoundary	0	3.71	7.88	4.63	4.31	5.37	9.81	0.00
60	E21a_E22a	KnownJunction	1	17.64	56.83	4.38	13.79	8.71	68.29	5.06
61	ER21b	ExonRegion	0	5.61	5.47	2.08	4.90	2.57	15.27	1.43
62	E21_Db	KnownBoundary	0	0.63	2.81	0.88	3.87	1.15	3.32	1.43
63	E21b_E22a	KnownJunction	0	3.87	1.63	0.57	3.06	0.00	3.70	0.82
64	ER21c	ExonRegion	0	1.85	1.06	1.42	2.34	1.25	2.32	0.94
65	E22_Aa	NovelBoundary	0	1.37	11.72	3.65	8.70	1.98	7.93	0.75
66	ER22a	ExonRegion	0	27.83	72.31	13.83	29.74	27.99	109.31	16.47
67	E22a_E23a	KnownJunction	0	22.56	59.43	11.65	35.14	15.40	72.55	10.79
68	ER23a	ExonRegion	0	23.85	62.07	14.55	31.60	24.96	103.98	15.72
69	E23_Da	NovelBoundary	0	1.80	12.90	3.85	15.88	5.46	36.88	3.15
70	E23a_E24a	KnownJunction	0	22.40	55.62	12.21	27.61	22.68	97.44	15.61
71	I23	Intron	0	3.00	8.51	2.47	4.43	1.93	15.26	1.07
72	I23_SR1	SilentIntronRegion	0	3.36	8.74	2.74	4.48	2.20	16.43	1.06
73	E24_Aa	NovelBoundary	0	3.29	21.10	4.60	11.16	0.88	25.65	3.63
74	ER24a	ExonRegion	0	25.93	63.22	15.87	32.47	20.96	123.03	15.43
75	E24a_E25a	KnownJunction	0	21.43	39.25	12.50	19.10	24.62	92.27	13.13
76	E25_Aa	NovelBoundary	1	10.63	0.00	5.88	0.00	0.00	0.00	0.00
77	ER25a	ExonRegion	0	17.72	43.97	12.06	15.10	20.91	85.42	11.95
78	E25a_E26a	KnownJunction	0	14.62	31.68	11.67	15.50	12.84	65.61	6.86
79	E25a_E27a	NovelJunction	1	0.00	0.00	0.78	1.33	0.00	11.63	0.00
80	ER26a	ExonRegion	0	18.71	48.05	12.81	20.67	25.16	78.08	9.48
81	E26a_E27a	KnownJunction	0	16.84	49.42	12.37	26.20	19.66	94.98	8.67
82	ER27a	ExonRegion	0	19.74	53.38	11.05	29.97	20.85	97.95	9.85
83	E27a_E28a	KnownJunction	0	18.51	43.64	8.64	31.40	29.81	110.47	13.07
84	ER28a	ExonRegion	0	15.81	55.90	12.64	27.49	29.29	136.61	8.20
85	E28a_E29a	KnownJunction	0	15.89	52.75	18.77	24.14	38.34	101.41	11.04
86	ER29a	ExonRegion	0	26.14	77.22	19.25	35.60	23.16	164.50	15.42
87	E29a_E30a	KnownJunction	0	24.65	81.94	17.86	29.48	21.39	163.72	11.68
88	ER30a	ExonRegion	0	13.89	42.68	10.95	18.71	18.53	91.79	10.59
89	E30_Da	KnownBoundary	1	11.62	30.87	9.99	7.91	14.94	78.50	9.32
90	ER30b	ExonRegion	0	14.11	38.94	11.86	14.38	23.02	70.16	9.93