Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	EML4	Gene	0	152.28	109.49	74.96	104.58	381.78	96.83	104.89
2	402711	Transcript	1	0.43	3.32	1.63	17.41	161.91	22.78	0.74
3	318522	Transcript	0	0	0	0	0	0	0	0
4	409040	Transcript	0	8.92	6.48	4.97	0.84	8.13	4.25	0.92
5	401738	Transcript	0	16.02	13.68	6.71	8.31	14.34	10.08	7.83
6	406175	Transcript	1	24.87	11.78	10.38	6.40	26.79	7.44	7.70
7	404662	Transcript	0	3.65	2.90	2.04	1.78	1.59	1.98	1.12
8	IG48_SR8	SilentIntergenicRegion	0	0.00	0.38	0.34	0.89	0.00	8.71	0.00
9	ER1a	ExonRegion	0	0.86	1.01	1.07	3.59	4.45	0.51	1.49
10	ER1b	ExonRegion	0	2.00	4.62	2.03	6.23	16.04	3.92	4.05
11	ER1c	ExonRegion	0	14.07	31.62	5.32	29.80	37.78	17.06	15.25
12	E1_Ad	KnownBoundary	0	16.99	25.64	8.49	15.33	16.25	20.13	12.00
13	ER1d	ExonRegion	0	31.36	66.12	20.42	57.30	45.68	57.15	31.02
14	E1a_E2a	KnownJunction	0	75.37	137.66	53.89	98.56	217.85	115.32	65.04
15	ER2a	ExonRegion	0	104.12	206.82	74.05	164.65	202.52	174.08	94.82
16	E2a_E3a	KnownJunction	0	150.26	199.32	104.04	170.48	385.77	181.01	118.33
17	ER3a	ExonRegion	0	200.25	217.85	118.81	166.87	447.75	184.86	118.72
18	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	E3a_E4b	KnownJunction	0	133.30	170.69	70.79	114.16	148.16	116.12	76.85
20	E3a_E5a	KnownJunction	1	0.00	5.62	2.18	31.24	319.37	45.05	0.00
21	ER4a	ExonRegion	0	40.73	57.10	23.48	41.57	47.51	38.01	24.06
22	ER4b	ExonRegion	1	364.21	207.50	105.21	173.65	325.55	169.48	99.33
23	E4_Da	KnownBoundary	0	16.24	4.54	7.73	0.00	3.30	4.72	2.89
24	E4a_E5a	KnownJunction	1	379.58	205.99	100.79	206.84	406.26	225.33	95.68
25	ER4c	ExonRegion	0	8.92	6.48	4.97	0.84	8.13	4.25	0.92
26	ER5a	ExonRegion	1	564.54	187.31	129.08	217.36	860.28	221.54	107.90
27	E6a_E7a	KnownJunction	0	18.24	3.26	3.35	0.00	7.17	6.30	4.03
28	E6a_E8a	KnownJunction	1	246.63	110.45	101.94	119.91	598.94	92.78	86.02
29	ER6a	ExonRegion	1	312.13	113.64	109.76	131.27	597.30	110.86	99.29
30	ER7a	ExonRegion	0	13.65	4.86	4.02	0.00	7.29	4.87	5.79
31	E7a_E8a	KnownJunction	0	7.48	3.18	2.69	0.00	9.73	1.21	5.29
32	ER8a	ExonRegion	0	199.37	123.79	87.70	119.46	443.93	97.97	94.40
33	E8a_E9a	KnownJunction	0	182.92	131.02	89.53	120.01	386.02	98.06	109.18
34	ER9a	ExonRegion	0	135.48	144.05	87.50	122.84	370.39	100.16	125.09
35	E9a_E10a	KnownJunction	0	76.41	121.24	73.55	75.23	342.66	76.03	110.60
36	I9_AR1	ActiveIntronRegion	1	33.81	11.85	14.91	17.09	21.19	10.23	2.59
37	ER10a	ExonRegion	0	103.84	114.44	74.19	86.43	343.56	77.64	115.49
38	E10a_E11b	KnownJunction	0	105.83	83.94	61.46	89.89	331.78	58.93	101.09
39	ER11a	ExonRegion	1	45.13	23.56	19.74	12.81	38.60	13.66	15.41
40	E11_Ab	KnownBoundary	1	34.97	39.07	11.84	6.56	47.05	10.69	17.50
41	ER11b	ExonRegion	0	170.35	143.88	92.68	125.88	451.56	96.46	130.58
42	E11a_E12a	KnownJunction	0	347.30	135.67	112.58	124.08	524.08	101.49	134.94
43	ER12a	ExonRegion	0	269.31	189.87	126.15	171.85	416.51	149.70	146.83
44	E12a_E13a	KnownJunction	0	176.16	177.20	107.35	167.53	482.03	146.46	118.15
45	ER13a	ExonRegion	0	312.69	178.58	151.20	183.42	579.17	171.66	169.40
46	E13a_E14a	KnownJunction	0	175.49	126.92	101.28	114.92	426.62	113.12	106.30
47	ER14a	ExonRegion	0	150.59	141.03	94.53	128.45	391.19	107.19	113.79
48	E14a_E15a	KnownJunction	0	103.56	131.12	74.58	111.18	337.77	100.37	99.57
49	E14a_E16a	NovelJunction	0	5.67	6.62	3.03	8.97	0.00	12.41	0.00
50	ER15a	ExonRegion	0	127.40	139.32	83.51	125.02	374.93	108.32	115.94
51	E15a_E16a	KnownJunction	0	148.77	149.17	90.99	121.10	400.77	152.17	131.12
52	ER16a	ExonRegion	0	184.22	148.49	112.30	146.60	498.38	128.41	148.12
53	E16a_E17a	KnownJunction	0	221.54	153.11	138.63	135.83	783.20	165.27	172.02
54	E16a_E24b	NovelJunction	0	78.41	17.73	40.25	18.29	114.39	22.91	30.31
55	ER17a	ExonRegion	0	235.20	172.69	111.04	173.91	584.96	134.43	161.23
56	E17a_E18a	KnownJunction	0	172.41	147.38	95.42	134.75	504.81	149.52	157.98
57	E17a_E19a	NovelJunction	0	4.57	16.81	4.74	17.20	3.04	9.94	1.36
58	ER18a	ExonRegion	0	212.16	138.06	110.22	147.23	586.76	128.46	161.16
59	E18a_E19a	KnownJunction	0	290.97	122.50	106.97	115.71	749.91	101.25	163.55
60	E18a_E21a	NovelJunction	0	8.81	4.60	5.02	15.82	1.18	11.10	1.29
61	ER19a	ExonRegion	0	258.36	147.95	107.46	131.84	755.25	115.68	170.24
62	E19a_E20a	KnownJunction	0	242.20	175.18	109.01	145.07	717.36	148.20	172.69
63	ER20a	ExonRegion	0	326.13	197.09	145.44	162.35	782.36	164.33	193.28
64	E20a_E21a	KnownJunction	0	395.38	205.39	156.44	188.28	1090.21	175.46	217.36
65	ER21a	ExonRegion	0	338.99	184.92	152.13	184.82	919.95	152.26	232.30
66	E21a_E22b	KnownJunction	0	316.56	189.65	139.03	171.08	869.88	134.99	220.78
67	E21b_E22a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
68	ER21b	ExonRegion	0	0.67	1.78	0.41	0.00	1.13	0.00	1.26
69	ER22a	ExonRegion	0	13.94	9.83	7.77	7.13	5.22	7.92	3.22
70	E22_Ab	KnownBoundary	0	36.15	38.09	20.45	27.52	8.18	43.47	10.23
71	ER22b	ExonRegion	0	305.07	227.24	139.02	202.20	765.35	149.43	227.48
72	E22a_E23a	KnownJunction	0	259.96	218.00	124.91	195.33	642.76	148.18	217.58
73	ER23a	ExonRegion	0	252.49	178.19	134.14	211.26	916.75	148.45	247.84
74	E23a_E24a	KnownJunction	0	232.24	188.87	138.79	231.90	680.17	138.29	267.78
75	ER24a	ExonRegion	0	176.97	139.56	92.94	144.93	523.57	140.37	156.35
76	E24_Da	KnownBoundary	0	124.22	50.49	60.74	48.20	337.68	37.92	69.61
77	ER24b	ExonRegion	0	137.36	59.28	61.90	58.06	335.95	42.01	80.09
78	E24_Db	KnownBoundary	0	157.05	63.13	70.36	67.81	337.31	49.18	76.43
79	ER24c	ExonRegion	0	139.93	64.80	77.28	62.85	388.76	46.95	86.49
80	E24_Dc	KnownBoundary	0	96.75	48.92	59.31	34.87	298.21	43.95	72.39
81	E24c_E24b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
82	E24_Ab	KnownBoundary	0	111.81	35.91	55.05	39.42	370.64	37.28	53.73
83	ER24d	ExonRegion	0	152.43	62.01	81.42	56.26	404.31	56.69	95.50
84	ER24e	ExonRegion	0	120.16	85.47	67.09	86.64	399.08	86.77	104.73
85	ER24f	ExonRegion	0	10.20	1.48	6.96	1.52	50.80	2.72	4.23
86	ER24g	ExonRegion	0	4.61	0.00	1.02	0.00	14.98	1.23	0.00
87	IG49	Intergenic	0	14.93	6.32	6.14	7.59	1.79	10.41	2.40
88	IG49_AR1	ActiveIntergenicRegion	0	18.81	5.42	8.75	5.61	3.07	6.67	3.07
89	IG49_AR2	ActiveIntergenicRegion	0	9.60	5.04	5.55	8.26	3.47	10.49	2.49
90	IG49_SR2	SilentIntergenicRegion	0	12.93	5.90	6.35	8.11	1.48	12.32	2.40
91	IG49_AR3	ActiveIntergenicRegion	0	13.69	7.38	7.41	12.08	0.72	15.01	3.33
92	IG49_SR3	SilentIntergenicRegion	0	13.89	7.61	4.81	9.20	1.76	8.66	2.11
93	IG49_AR4	ActiveIntergenicRegion	0	22.16	9.12	8.18	9.87	1.58	13.65	2.26
94	IG49_SR4	SilentIntergenicRegion	0	15.94	5.83	5.21	5.92	1.51	12.79	2.36