Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	HNRPLL	Gene	0	87.27	33.18	84.59	80.97	163.58	69.37	56.29
2	409636	Transcript	0	9.13	3.90	10.23	5.88	19.53	4.67	8.79
3	378908	Transcript	0	0	0	0	0	0	0	0
4	410076	Transcript	1	32.28	12.27	35.43	14.06	19.37	11.48	8.20
5	358367	Transcript	1	18.64	29.24	39.06	49.08	17.79	49.55	17.31
6	409328	Transcript	0	3.15	0.00	4.10	4.33	3.27	3.22	0.00
7	378915	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	272249	Transcript	0	0	0	0	0	0	0	0
9	ER1a	ExonRegion	0	0.03	2.75	0.20	2.69	3.01	1.42	0.55
10	E1_Ab	KnownBoundary	0	0.00	2.76	0.00	2.90	2.07	1.37	0.89
11	E1_Ac	KnownBoundary	0	0.00	2.86	0.79	6.20	7.65	5.71	1.59
12	ER1b	ExonRegion	0	0.77	3.64	1.35	12.81	8.69	5.57	2.70
13	E1_Ad	KnownBoundary	0	1.82	2.05	2.11	12.11	9.01	1.66	1.45
14	ER1c	ExonRegion	0	0.96	2.47	1.77	13.36	12.84	5.47	2.94
15	ER1d	ExonRegion	1	9.82	11.15	8.13	30.15	32.98	28.09	25.07
16	E1_Ae	KnownBoundary	0	3.74	2.73	1.49	13.52	4.45	11.98	12.84
17	E1_Da	KnownBoundary	1	2.54	7.91	0.82	22.19	1.11	25.54	21.31
18	E1a_E1g	KnownJunction	0	8.19	2.50	8.97	1.22	27.50	4.18	16.18
19	ER1e	ExonRegion	0	2.45	11.07	1.87	34.38	3.05	28.33	9.23
20	E1_Af	KnownBoundary	1	5.12	4.62	1.45	23.19	3.02	6.22	2.35
21	E1_Ag	KnownBoundary	0	8.36	27.74	6.64	40.91	7.24	27.82	9.06
22	ER1f	ExonRegion	0	9.99	23.22	6.57	28.78	6.79	18.77	5.84
23	ER1g	ExonRegion	0	18.80	30.84	24.90	51.43	38.39	43.15	22.65
24	E1b_E2a	KnownJunction	0	38.92	35.73	34.19	64.53	93.87	61.61	31.67
25	ER2a	ExonRegion	0	141.01	59.95	113.40	115.66	230.22	96.10	87.99
26	E2a_E3a	KnownJunction	0	231.52	89.11	164.67	159.89	426.98	132.79	101.60
27	ER3a	ExonRegion	0	350.30	114.85	288.09	262.64	503.42	230.81	160.45
28	E3a_E4a	KnownJunction	0	318.49	86.09	270.23	229.38	531.11	188.97	159.64
29	ER4a	ExonRegion	0	231.36	106.38	233.10	226.99	532.63	182.23	173.49
30	E4_Da	NovelBoundary	1	72.32	2.13	91.55	0.00	0.00	0.00	1.38
31	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	E4a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	E4b_E5b	KnownJunction	0	167.72	113.02	205.51	230.44	487.64	191.40	163.32
34	E4b_E6b	KnownJunction	0	3.15	0.00	4.10	4.33	3.27	3.22	0.00
35	ER4b	ExonRegion	0	177.82	111.52	215.00	234.18	515.55	192.48	184.03
36	ER5a	ExonRegion	0	28.56	19.24	36.01	39.28	84.22	31.67	30.02
37	ER5b	ExonRegion	0	176.61	121.30	220.69	265.82	457.33	196.04	179.36
38	E5a_E6a	KnownJunction	0	177.68	111.08	192.59	207.79	400.75	169.21	169.80
39	E6_Ab	NovelBoundary	1	77.52	1.63	93.61	2.36	1.11	2.04	0.54
40	ER6a	ExonRegion	0	179.43	112.98	199.49	225.28	417.75	179.00	179.89
41	ER6b	ExonRegion	0	199.05	108.97	222.20	241.54	430.68	220.15	180.84
42	E6_Da	KnownBoundary	1	64.09	5.12	64.01	11.19	32.67	7.05	12.54
43	E6a_E7a	KnownJunction	0	27.69	42.30	54.23	67.51	19.87	71.61	23.59
44	E6a_E8a	KnownJunction	0	124.01	66.60	126.39	178.56	383.00	149.76	141.59
45	ER6c	ExonRegion	1	32.28	12.27	35.43	14.06	19.37	11.48	8.20
46	E6_Db	NovelBoundary	0	20.60	2.63	25.32	4.17	11.96	7.56	8.48
47	I6_SR1	SilentIntronRegion	1	15.11	1.30	23.09	4.67	7.38	2.58	2.46
48	I6_AR2	ActiveIntronRegion	1	11.44	2.83	22.73	2.49	10.35	2.45	2.40
49	I6_AR6	ActiveIntronRegion	1	7.68	4.86	18.10	3.74	7.40	1.23	2.22
50	ER7a	ExonRegion	1	9.60	16.18	23.90	30.64	15.71	27.49	11.04
51	E7_Da	NovelBoundary	1	25.39	37.80	62.40	41.21	29.83	47.11	15.21
52	ER8a	ExonRegion	0	124.89	72.86	148.96	224.66	418.91	146.18	143.32
53	E8a_E9a	KnownJunction	0	136.66	85.30	180.13	246.58	394.36	155.71	162.15
54	ER9a	ExonRegion	0	158.36	88.03	184.86	227.21	433.80	173.43	133.29
55	E9_Da	NovelBoundary	1	75.59	2.63	92.13	0.00	3.25	0.00	1.39
56	E9a_E10a	KnownJunction	0	202.07	66.99	209.30	208.38	555.83	151.28	123.31
57	ER10a	ExonRegion	0	396.68	90.48	288.66	278.03	740.95	204.47	172.92
58	E10a_E11a	KnownJunction	0	440.28	114.75	314.98	330.86	542.78	310.50	163.56
59	ER11a	ExonRegion	0	353.89	84.96	270.54	229.24	623.99	208.69	163.93
60	E11a_E12a	KnownJunction	0	234.23	57.09	241.29	188.36	413.78	183.42	141.45
61	ER12a	ExonRegion	0	217.88	75.17	234.40	236.34	417.05	239.37	158.33
62	E12a_E13a	KnownJunction	0	180.59	75.45	181.24	245.17	360.09	274.00	147.96
63	ER13a	ExonRegion	0	163.93	79.75	179.14	206.98	297.58	235.29	126.15
64	E13a_E14a	KnownJunction	0	153.51	59.35	169.17	153.66	276.03	155.06	81.00
65	ER14a	ExonRegion	0	91.09	36.96	102.54	112.15	204.86	99.74	69.84
66	E14_Da	KnownBoundary	0	39.99	17.58	66.43	65.18	105.01	43.74	47.90
67	ER14b	ExonRegion	0	48.32	12.30	64.78	50.68	98.19	51.39	45.83
68	E14_Db	KnownBoundary	0	32.53	10.17	31.89	15.23	86.91	8.74	30.41
69	ER14c	ExonRegion	0	18.22	5.05	20.26	9.07	36.05	7.93	17.04
70	IG22_AR20	ActiveIntergenicRegion	0	2.53	0.57	3.47	0.78	3.21	0.56	7.59
71	IG22_AR19	ActiveIntergenicRegion	0	2.24	0.00	1.13	1.78	2.84	0.58	7.68