Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	BCL11A	Gene	0	14.43	1.05	6.72	1.33	35.09	0.50	0.96
2	409976	Transcript	0	3.57	1.42	1.73	0.54	6.51	0.00	0.34
3	359629	Transcript	0	10.85	3.65	19.07	5.80	75.64	0.00	3.07
4	409485	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	409351	Transcript	0	1.39	0.00	0.00	1.34	3.68	0.00	0.00
6	358510	Transcript	0	4.59	2.68	5.99	4.25	16.83	0.00	0.89
7	335712	Transcript	0	16.78	0.42	6.68	0.47	39.10	0.14	0.58
8	356842	Transcript	0	0	0	0	0	0	0	0
9	378117	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	356326	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER1a	ExonRegion	0	3.87	2.85	2.88	0.00	8.51	0.00	0.67
12	E1_Ab	KnownBoundary	0	3.25	2.68	3.66	0.00	2.26	0.00	0.00
13	E1_Ac	KnownBoundary	0	0.00	1.34	0.00	0.00	0.00	1.31	0.00
14	ER1b	ExonRegion	0	1.61	2.01	2.01	0.00	1.21	0.00	0.15
15	ER1c	ExonRegion	0	0.15	0.59	0.00	0.00	0.12	0.00	0.00
16	E1_Ad	KnownBoundary	0	1.34	32.31	0.00	38.98	4.63	68.45	1.78
17	E1_Ae	KnownBoundary	0	5.51	1.60	1.84	0.00	3.11	0.00	0.00
18	ER1d	ExonRegion	0	3.93	0.00	1.43	0.00	1.48	0.00	0.00
19	ER1e	ExonRegion	0	12.31	2.11	3.81	0.84	10.77	0.00	0.64
20	E1_Af	KnownBoundary	0	8.56	1.18	2.18	1.49	11.34	0.00	1.45
21	ER1f	ExonRegion	0	2.68	2.23	0.99	0.38	9.97	0.00	0.01
22	E1_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	2.17	0.00	0.00
23	E1a_E1g	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	E1_Db	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	E1b_E1h	KnownJunction	0	3.27	0.00	0.57	1.08	4.52	0.00	0.00
26	E1_Ag	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	ER1g	ExonRegion	0	1.79	1.62	0.56	1.25	3.78	0.00	0.00
28	E1_Ah	KnownBoundary	0	3.94	0.00	1.11	1.08	3.78	0.00	0.00
29	ER1h	ExonRegion	0	1.00	0.06	0.00	0.00	1.17	0.00	0.00
30	ER1i	ExonRegion	0	2.48	0.00	0.23	0.14	2.07	0.00	0.00
31	ER1j	ExonRegion	0	8.39	0.00	4.47	2.13	23.92	1.47	0.97
32	E1c_E2a	KnownJunction	0	10.33	0.00	6.22	1.68	41.26	3.19	1.63
33	ER2a	ExonRegion	0	37.48	6.19	17.29	8.67	108.47	2.77	3.97
34	E2_Da	NovelBoundary	0	9.35	0.00	3.85	0.00	24.60	0.00	2.26
35	E2a_E3a	KnownJunction	0	2.02	0.00	0.00	1.68	4.10	0.00	0.00
36	E2a_E5a	KnownJunction	0	33.46	0.00	23.96	3.98	140.02	1.13	4.06
37	E2a_E6a	KnownJunction	0	4.59	2.68	5.99	4.25	16.83	0.00	0.89
38	I2	Intron	0	9.10	0.67	3.31	0.66	26.42	0.05	0.87
39	I2_SR1	SilentIntronRegion	0	7.60	1.10	3.95	1.35	31.29	0.00	0.85
40	I2_AR1	ActiveIntronRegion	0	8.26	1.75	3.45	0.50	23.86	0.00	1.03
41	I2_SR2	SilentIntronRegion	0	14.98	0.00	5.23	0.57	35.25	0.00	0.89
42	I2_AR2	ActiveIntronRegion	0	8.68	0.13	2.12	0.43	25.03	0.00	0.72
43	I2_SR3	SilentIntronRegion	0	14.82	0.00	4.06	1.53	29.66	0.00	0.59
44	I2_AR4	ActiveIntronRegion	0	5.19	0.47	2.04	0.48	18.96	0.24	0.90
45	ER3a	ExonRegion	0	0.77	0.00	0.00	0.99	3.26	0.00	0.00
46	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
47	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
48	ER5a	ExonRegion	0	34.55	0.23	21.54	4.13	107.08	1.20	4.66
49	E5_Da	NovelBoundary	0	11.52	0.00	4.53	0.00	0.00	0.00	0.00
50	E5a_E6a	KnownJunction	0	26.87	1.31	16.31	4.50	101.64	3.06	2.91
51	ER6a	ExonRegion	0	45.58	4.99	28.75	8.06	136.22	1.89	4.71
52	E6_Da	KnownBoundary	0	12.05	2.84	3.87	1.11	17.73	0.00	0.00
53	E6a_E7a	KnownJunction	0	10.85	3.65	19.07	5.80	75.64	0.00	3.07
54	E6_Db	KnownBoundary	0	4.86	0.00	4.57	1.44	16.92	4.74	0.00
55	E6b_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
56	ER6b	ExonRegion	0	25.36	4.86	10.16	2.49	51.83	3.68	0.00
57	ER6c	ExonRegion	0	13.76	0.55	5.50	2.21	30.48	0.89	1.10
58	E6_Dc	KnownBoundary	0	3.27	0.00	0.56	0.00	9.75	0.00	0.00
59	E6c_E6b	KnownJunction	0	1.17	0.00	0.00	0.00	0.00	0.00	0.00
60	ER6d	ExonRegion	0	3.46	0.00	0.82	1.14	8.69	0.00	0.73
61	E6_Ab	KnownBoundary	0	6.14	0.00	1.45	1.65	2.21	0.00	1.39
62	ER6e	ExonRegion	0	10.96	0.69	5.22	0.60	23.03	0.42	0.63
63	E6_Dd	KnownBoundary	0	15.17	1.63	4.56	1.60	26.40	0.00	0.00
64	E6d_E7a	KnownJunction	0	9.48	2.71	2.92	1.27	31.08	0.99	1.55
65	ER6f	ExonRegion	0	16.61	3.78	8.07	2.66	53.51	0.66	0.63
66	E6_De	KnownBoundary	0	28.67	4.23	15.16	1.68	121.49	0.00	1.36
67	ER6g	ExonRegion	0	16.16	0.96	6.99	0.25	34.65	0.32	0.49
68	E6_Df	KnownBoundary	0	26.02	0.00	8.72	0.00	22.02	0.00	0.00
69	ER6h	ExonRegion	0	16.78	0.42	6.68	0.47	39.10	0.14	0.58
70	ER7a	ExonRegion	0	19.10	3.23	15.46	3.05	48.93	0.85	4.43
71	E7_Da	KnownBoundary	0	16.74	0.00	5.17	0.00	26.19	1.29	1.56
72	E7a_E7b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
73	E7_Ab	KnownBoundary	0	16.21	1.08	17.56	1.08	45.21	0.00	1.38
74	ER7b	ExonRegion	0	27.25	1.03	19.44	0.96	52.33	1.23	3.37
75	ER7c	ExonRegion	0	12.66	0.90	8.71	0.93	23.46	0.77	1.19
76	E7_Db	KnownBoundary	0	0.00	0.00	0.82	0.00	0.00	0.00	0.00
77	E7_Dc	KnownBoundary	0	0.00	0.00	0.79	0.00	0.00	1.58	0.00
78	ER7d	ExonRegion	0	0.00	0.00	1.35	0.00	0.00	1.23	0.00
79	ER7e	ExonRegion	0	0.18	0.00	0.31	0.00	0.50	0.15	0.00