Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AAK1	Gene	0	33.07	40.21	75.72	63.09	47.33	46.55	91.99
2	406297	Transcript	1	22.57	12.49	19.86	11.83	18.29	10.42	9.33
3	409085	Transcript	0	3.37	6.17	7.44	14.50	6.02	11.50	4.94
4	409068	Transcript	0	5.19	0.15	10.42	0.89	0.89	0.30	1.29
5	390657	Transcript	0	0	0	0	0	0	0	0
6	ER1a	ExonRegion	0	2.13	6.07	1.23	13.17	0.00	7.74	2.87
7	E1_Ab	KnownBoundary	0	4.04	12.53	5.20	27.90	0.00	25.41	17.91
8	ER1b	ExonRegion	0	4.06	13.72	8.03	18.23	2.31	14.28	7.82
9	E1a_E2a	KnownJunction	0	5.74	22.02	20.38	29.80	1.89	18.52	17.67
10	ER2a	ExonRegion	0	8.71	25.97	23.30	44.84	6.59	38.81	27.97
11	E2_Ab	KnownBoundary	1	13.57	26.82	44.53	72.90	35.13	79.65	40.24
12	ER2b	ExonRegion	0	23.24	52.47	62.13	92.89	40.61	80.13	93.96
13	E2a_E3a	KnownJunction	0	56.56	101.72	136.58	143.56	82.55	130.97	203.71
14	ER3a	ExonRegion	0	55.86	123.46	163.65	194.53	87.89	139.89	260.81
15	E3a_E4a	KnownJunction	0	59.35	145.57	192.72	190.80	97.79	145.52	274.32
16	ER4a	ExonRegion	0	68.83	122.64	207.21	181.47	129.90	146.78	302.37
17	E4a_E5a	KnownJunction	0	82.23	96.68	191.73	135.27	94.33	97.10	263.05
18	ER5a	ExonRegion	0	63.14	113.82	190.85	137.18	103.26	96.68	235.67
19	E5a_E6a	KnownJunction	0	81.63	99.12	191.07	107.28	102.19	78.42	236.47
20	ER6a	ExonRegion	0	75.74	82.76	202.74	112.82	127.06	71.22	237.30
21	E6a_E7a	KnownJunction	0	108.60	69.80	252.13	87.80	178.11	58.29	221.76
22	I6_SR2	SilentIntronRegion	1	11.86	4.57	18.27	22.32	2.66	18.63	3.00
23	I6_AR3	ActiveIntronRegion	1	5.67	1.87	18.22	8.65	0.79	5.63	1.15
24	ER7a	ExonRegion	0	161.47	98.11	309.33	136.24	224.06	98.39	284.39
25	E7a_E8a	KnownJunction	0	173.89	121.82	350.62	152.52	222.97	131.32	312.08
26	ER8a	ExonRegion	0	225.34	154.20	448.39	212.75	261.39	165.23	393.25
27	E8a_E9a	KnownJunction	0	217.55	132.64	456.63	192.73	305.96	156.94	432.38
28	ER9a	ExonRegion	0	135.33	98.61	311.94	168.52	194.84	113.16	340.45
29	E9_Da	NovelBoundary	1	13.99	8.38	40.08	8.32	6.50	17.42	2.44
30	E9a_E10a	KnownJunction	0	73.75	63.84	218.83	105.82	128.59	88.31	202.02
31	I9	Intron	0	9.77	8.63	29.24	13.64	6.30	12.75	5.59
32	I9_SR1	SilentIntronRegion	1	6.64	3.69	31.46	7.48	6.98	9.98	3.27
33	I9_AR2	ActiveIntronRegion	0	8.10	7.93	22.08	8.47	6.07	7.23	4.84
34	I9_SR2	SilentIntronRegion	1	9.89	9.56	32.20	16.46	5.94	17.21	5.11
35	I9_AR3	ActiveIntronRegion	0	12.78	10.95	31.73	16.63	7.64	12.15	8.67
36	I9_SR3	SilentIntronRegion	0	9.61	6.70	24.64	15.56	3.26	13.65	3.71
37	E10_Aa	NovelBoundary	1	4.67	14.58	21.67	13.90	3.90	18.14	4.26
38	ER10a	ExonRegion	0	74.53	81.88	258.73	150.85	142.66	102.16	324.88
39	E10a_E11a	KnownJunction	0	93.35	93.84	305.24	193.16	173.22	137.86	410.55
40	ER11a	ExonRegion	0	42.57	80.77	147.64	131.79	75.35	112.99	226.73
41	E11a_E12a	KnownJunction	1	31.68	83.70	132.98	112.43	79.81	99.29	227.55
42	E12_Aa	NovelBoundary	1	18.14	0.00	52.71	0.00	0.00	1.47	0.00
43	ER12a	ExonRegion	1	17.61	53.63	57.09	96.74	44.40	69.96	120.96
44	E12a_E13a	KnownJunction	0	33.56	63.24	74.28	139.03	53.78	88.98	174.27
45	ER13a	ExonRegion	1	19.76	72.64	66.34	125.08	51.24	88.49	142.41
46	E13a_E14a	KnownJunction	1	21.41	60.84	71.39	83.25	51.09	77.67	170.39
47	ER14a	ExonRegion	0	33.19	47.88	87.38	93.20	54.78	74.82	151.41
48	E14_Da	NovelBoundary	0	28.24	27.01	62.86	78.02	29.21	60.70	85.00
49	E14a_E23a	KnownJunction	0	9.88	0.00	18.61	0.00	0.00	0.00	0.00
50	E14b_E15a	KnownJunction	1	34.87	29.45	125.58	95.60	78.33	51.00	149.10
51	ER14b	ExonRegion	0	35.42	31.10	91.51	89.03	52.48	58.48	116.74
52	ER15a	ExonRegion	0	50.28	66.69	158.85	126.09	77.30	69.36	171.22
53	E15a_E16a	KnownJunction	0	62.27	71.72	191.10	121.83	67.54	71.56	214.66
54	ER16a	ExonRegion	0	48.14	50.91	133.03	95.05	75.43	51.76	148.76
55	E16a_E17a	KnownJunction	0	6.26	10.90	30.01	25.66	13.28	20.88	25.22
56	E16a_E18a	NovelJunction	1	0.00	3.10	4.33	4.33	0.00	17.66	3.40
57	E16a_E19a	NovelJunction	0	3.59	1.58	9.83	0.00	5.19	2.52	12.55
58	ER17a	ExonRegion	0	6.08	14.29	24.80	33.58	13.92	23.22	17.25
59	E17a_E18a	KnownJunction	0	0.85	8.30	6.15	14.93	1.08	17.07	1.48
60	E17a_E19a	NovelJunction	0	2.00	2.68	8.54	2.90	9.87	1.34	8.89
61	ER18a	ExonRegion	0	2.72	9.04	13.11	19.69	4.53	16.21	5.26
62	E18_Da	KnownBoundary	0	3.89	1.05	6.47	1.27	2.07	1.13	1.25
63	E18a_E19a	KnownJunction	1	0.73	4.31	11.61	18.45	3.43	23.56	5.68
64	ER18b	ExonRegion	0	5.23	2.72	9.97	1.78	4.84	2.14	1.85
65	E18_Db	KnownBoundary	0	8.51	3.15	9.27	0.00	6.39	0.00	1.30
66	ER18c	ExonRegion	1	22.57	12.49	19.86	11.83	18.29	10.42	9.33
67	ER19a	ExonRegion	1	3.93	6.09	12.19	20.86	10.73	16.94	8.49
68	E19a_E20a	KnownJunction	0	4.59	4.73	4.45	15.36	7.19	12.97	2.44
69	ER20a	ExonRegion	0	4.51	8.20	9.03	22.34	9.59	13.30	5.35
70	E20a_E21a	KnownJunction	0	4.69	10.75	5.16	22.73	6.89	12.81	5.95
71	ER21a	ExonRegion	0	5.94	10.79	9.21	14.74	7.13	10.95	6.36
72	E21a_E22a	KnownJunction	0	0.00	1.63	1.45	0.00	0.00	0.00	2.34
73	ER22a	ExonRegion	0	2.53	2.85	6.44	1.55	3.21	1.51	2.94
74	I22_AR1	ActiveIntronRegion	1	1.54	8.71	7.00	10.81	3.24	0.00	4.05
75	Ix	Intron	0	46.02	25.56	115.59	45.91	72.20	34.71	126.29
76	Ix_AR3	ActiveIntronRegion	0	48.52	24.32	106.44	45.09	75.43	29.97	123.17
77	Ix_AR1	ActiveIntronRegion	0	45.45	31.98	149.82	52.96	72.31	47.42	165.07
78	Ix_SR1	SilentIntronRegion	0	36.74	17.66	84.25	34.99	58.43	28.76	59.96
79	ER23a	ExonRegion	0	0.50	0.30	2.24	1.79	1.78	0.61	2.58