Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	THADA	Gene	0	97.57	19.72	70.45	26.57	40.37	18.91	28.28
2	378636	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	356975	Transcript	0	0	0	0	0	0	0	0
4	330266	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	405975	Transcript	0	0.00	1.21	0.00	1.25	0.00	0.00	0.00
6	408045	Transcript	0	3.85	0.25	7.60	3.05	2.72	0.66	3.34
7	398653	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	404790	Transcript	0	0.54	0.79	0.65	0.32	1.30	0.06	1.21
9	403856	Transcript	0	3.41	1.08	2.33	0.71	2.57	0.63	1.96
10	405006	Transcript	0	6.24	1.91	10.54	6.10	4.70	1.32	5.35
11	402360	Transcript	0	0	0	0	0	0	0	0
12	409142	Transcript	0	0	0	0	0	0	0	0
13	402796	Transcript	0	1.60	0.00	8.64	1.38	0.00	1.13	0.86
14	407351	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	ER1a	ExonRegion	0	1.28	1.35	2.86	1.94	7.29	0.41	0.90
16	E1_Ad	KnownBoundary	0	10.50	6.25	16.73	7.94	55.60	6.41	5.73
17	ER1b	ExonRegion	0	8.15	5.18	12.69	5.40	21.43	6.54	5.22
18	ER1c	ExonRegion	0	17.82	12.07	34.46	15.82	40.70	12.57	14.34
19	ER1d	ExonRegion	0	28.69	16.16	56.12	22.52	48.10	16.24	23.88
20	E1_Ae	KnownBoundary	1	32.30	17.86	66.35	28.01	32.48	15.62	28.20
21	ER1e	ExonRegion	0	40.94	17.35	58.90	18.85	24.54	15.88	30.17
22	E1_Da	KnownBoundary	0	2.54	1.29	9.00	1.33	0.00	0.00	3.68
23	E1a_E2a	KnownJunction	0	6.08	0.00	1.32	1.33	0.88	1.31	3.32
24	E1a_E3b	KnownJunction	0	28.11	15.79	28.87	7.56	5.65	12.25	20.62
25	ER1f	ExonRegion	0	4.09	2.64	10.71	4.67	3.19	2.63	4.71
26	E1b_E3b	KnownJunction	0	8.40	1.18	10.38	7.53	6.20	0.00	5.99
27	ER2a	ExonRegion	0	2.78	1.21	1.80	0.56	0.83	0.47	1.55
28	E2a_E3b	KnownJunction	0	1.62	1.52	3.62	0.00	2.14	0.00	0.82
29	ER3a	ExonRegion	0	7.22	4.13	10.43	2.99	3.40	3.19	6.07
30	ER3b	ExonRegion	0	61.41	28.05	87.65	35.07	30.16	26.69	33.33
31	E3a_E4a	KnownJunction	0	122.65	44.48	180.55	55.62	47.37	37.22	56.81
32	ER4a	ExonRegion	0	106.90	48.38	170.41	53.07	63.90	38.21	55.66
33	E4a_E5a	KnownJunction	0	88.24	37.59	141.13	51.26	47.12	48.59	38.90
34	ER5a	ExonRegion	0	85.78	31.82	155.52	44.83	37.60	33.56	36.63
35	E5a_E6a	KnownJunction	0	70.35	20.57	152.48	40.77	24.94	24.79	33.12
36	ER6a	ExonRegion	0	73.13	24.19	145.47	38.71	30.69	16.71	30.20
37	E6a_E7a	KnownJunction	1	55.01	20.99	126.47	43.78	40.30	10.13	23.60
38	ER7a	ExonRegion	1	91.21	32.65	171.81	48.37	51.14	15.42	33.16
39	E7a_E8a	KnownJunction	1	77.14	22.65	116.37	30.75	56.02	13.78	21.37
40	ER8a	ExonRegion	1	125.79	28.61	202.15	54.46	58.36	21.14	32.08
41	E8a_E9a	KnownJunction	1	132.43	23.54	206.40	59.84	68.17	23.77	29.04
42	E9_Aa	NovelBoundary	1	59.65	0.00	98.67	0.00	0.00	0.00	3.70
43	ER9a	ExonRegion	1	140.79	45.97	231.56	69.11	63.00	37.39	48.24
44	E9a_E10a	KnownJunction	0	131.65	61.37	206.83	58.49	62.38	34.25	45.57
45	ER10a	ExonRegion	1	92.39	46.50	166.27	48.09	69.88	19.58	50.62
46	E10a_E11a	KnownJunction	1	73.52	37.41	111.74	57.95	55.72	15.57	42.09
47	E10a_E11b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
48	E11_Ab	NovelBoundary	1	42.33	22.07	63.32	32.73	16.18	6.43	20.28
49	ER11a	ExonRegion	1	74.97	36.18	115.00	55.70	48.95	15.39	43.10
50	ER11b	ExonRegion	1	67.16	31.53	98.08	42.86	44.64	18.10	41.88
51	E11a_E12a	KnownJunction	0	97.29	31.76	135.61	26.25	61.11	27.90	51.22
52	ER12a	ExonRegion	1	94.39	43.03	143.62	45.82	70.76	31.57	57.99
53	E12_Ab	KnownBoundary	0	98.84	25.64	172.43	49.17	70.36	34.97	67.11
54	ER12b	ExonRegion	0	117.52	33.13	162.94	53.44	72.31	35.37	51.10
55	E12a_E13a	KnownJunction	0	132.52	27.27	145.64	44.75	65.72	27.42	40.93
56	ER13a	ExonRegion	1	68.92	32.90	112.17	41.71	57.35	26.38	44.67
57	E13a_E14a	KnownJunction	0	56.06	37.07	112.39	49.03	92.67	31.06	58.16
58	ER14a	ExonRegion	0	57.31	38.92	122.62	46.44	58.76	33.97	60.98
59	E14a_E15b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
60	E14a_E15c	KnownJunction	0	57.36	21.07	102.95	56.30	46.57	27.01	40.86
61	ER15a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
62	ER15b	ExonRegion	0	19.21	8.10	33.42	16.63	14.04	9.40	14.17
63	ER15c	ExonRegion	0	74.89	25.74	143.77	40.41	64.91	26.59	59.33
64	E15a_E16a	KnownJunction	0	74.84	25.72	129.07	52.42	68.10	29.24	51.72
65	E16_Aa	NovelBoundary	1	30.91	0.00	45.99	0.00	2.21	0.00	0.00
66	ER16a	ExonRegion	0	92.50	33.42	158.57	40.49	64.29	36.35	51.41
67	E16_Da	KnownBoundary	0	2.82	1.63	2.04	0.00	3.53	0.00	4.80
68	E16a_E17a	KnownJunction	1	124.76	29.24	194.79	39.61	62.80	34.44	37.99
69	E16a_E19a	NovelJunction	0	5.94	2.10	9.02	0.00	1.15	2.95	8.97
70	ER16b	ExonRegion	0	3.17	1.59	2.56	0.94	6.44	0.72	2.15
71	ER17a	ExonRegion	0	106.62	36.31	162.55	44.15	84.21	39.84	59.44
72	E17a_E18a	KnownJunction	0	134.42	41.67	161.61	34.95	84.77	47.01	56.57
73	E17a_E19a	KnownJunction	0	1.60	0.00	8.64	1.38	0.00	1.13	0.86
74	ER18a	ExonRegion	1	89.91	37.78	125.87	50.62	75.54	40.08	55.00
75	E18_Da	KnownBoundary	0	1.87	0.00	1.57	1.14	2.07	1.15	2.91
76	E18a_E19a	KnownJunction	0	83.15	35.34	109.17	44.78	90.57	34.60	38.21
77	ER18b	ExonRegion	0	0.54	0.79	0.65	0.32	1.30	0.06	1.21
78	ER19a	ExonRegion	0	70.61	35.51	132.94	41.14	80.93	31.15	55.95
79	E19_Da	KnownBoundary	0	0.80	2.76	2.59	0.00	0.00	0.00	1.23
80	E19a_E20a	KnownJunction	0	71.98	39.51	113.84	42.21	49.52	31.49	42.06
81	E19a_E20b	KnownJunction	0	5.94	0.00	13.41	5.93	2.90	1.15	5.50
82	ER19b	ExonRegion	0	0.56	1.29	2.13	0.75	0.62	0.70	0.13
83	ER20a	ExonRegion	0	82.03	40.09	125.82	41.15	60.33	30.96	46.21
84	ER20b	ExonRegion	0	77.25	31.52	132.91	52.49	64.04	25.69	53.30
85	E20a_E21a	KnownJunction	0	95.35	28.01	147.87	65.24	88.82	28.54	66.61
86	E21_Aa	NovelBoundary	1	43.23	0.00	56.72	3.85	0.00	0.00	0.62
87	ER21a	ExonRegion	1	119.17	24.15	171.81	65.46	92.42	29.94	62.43
88	E21_Da	NovelBoundary	1	51.54	8.33	74.98	1.33	4.59	3.83	4.27
89	E21a_E22a	KnownJunction	0	133.82	23.57	156.52	49.60	79.32	32.13	66.77
90	ER22a	ExonRegion	0	112.72	22.97	144.85	47.91	84.01	24.43	62.22
91	E22_Da	NovelBoundary	1	48.48	0.00	57.22	0.00	0.00	0.00	0.67
92	E22a_E23a	KnownJunction	0	138.18	25.64	137.90	36.17	92.14	17.55	58.80
93	ER23a	ExonRegion	0	133.37	19.34	147.47	39.22	104.88	21.74	58.65
94	E23a_E24a	KnownJunction	1	108.85	19.60	148.19	53.59	92.97	24.28	56.18
95	ER24a	ExonRegion	0	189.68	30.00	172.82	64.71	99.04	33.49	66.69
96	E24a_E25a	KnownJunction	0	147.72	28.35	168.00	57.32	91.66	36.53	62.67
97	ER25a	ExonRegion	0	182.99	31.74	153.36	40.29	96.05	27.95	61.33
98	E25a_E26a	KnownJunction	0	134.07	28.45	123.53	27.47	97.93	27.28	55.26
99	ER26a	ExonRegion	0	154.61	26.85	153.72	30.08	90.33	29.80	53.13
100	E26a_E27a	KnownJunction	0	190.67	33.34	171.01	30.97	101.43	40.55	52.31
101	E26a_E29a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
102	I26_AR4	ActiveIntronRegion	1	227.01	4.64	9.29	0.00	0.47	0.39	1.14
103	ER27a	ExonRegion	1	512.70	42.74	200.90	33.82	100.96	35.02	52.74
104	E27a_E28a	KnownJunction	1	673.04	34.97	207.90	33.24	108.07	32.83	44.13
105	E27a_E30a	KnownJunction	0	21.08	5.07	7.33	5.45	7.61	2.89	4.43
106	ER28a	ExonRegion	1	422.26	43.91	167.03	53.54	103.09	40.40	59.62
107	E28a_E29a	KnownJunction	1	442.58	60.29	147.66	65.13	140.74	53.06	72.23
108	E28a_E30a	KnownJunction	0	2.54	0.00	0.00	0.00	1.01	0.00	0.00
109	ER29a	ExonRegion	0	443.13	62.87	173.98	63.52	102.65	47.28	71.35
110	E29a_E30a	KnownJunction	0	295.93	45.45	116.72	52.42	87.09	46.15	56.98
111	ER30a	ExonRegion	1	496.89	55.19	176.28	73.97	126.63	49.47	84.12
112	E30a_E31a	KnownJunction	1	620.10	49.26	206.98	76.29	111.21	47.06	66.24
113	ER31a	ExonRegion	0	463.68	53.58	175.23	66.96	97.57	47.13	76.29
114	E31_Da	KnownBoundary	0	0.00	0.00	1.05	0.00	0.99	0.00	0.86
115	E31a_E32a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
116	E31a_E33a	KnownJunction	1	545.19	39.01	185.88	54.26	102.49	34.81	68.93
117	ER31b	ExonRegion	0	1.77	0.50	1.78	0.17	2.53	0.17	1.18
118	ER32a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
119	I32_AR1	ActiveIntronRegion	0	20.82	8.26	17.47	7.66	1.47	10.93	1.82
120	ER33a	ExonRegion	0	405.66	46.15	147.58	58.86	91.52	51.48	70.68
121	E33a_E34a	KnownJunction	0	230.25	40.27	96.35	56.95	60.08	54.48	62.60
122	ER34a	ExonRegion	0	266.11	42.27	117.21	54.23	73.26	40.36	54.05
123	E34a_E35a	KnownJunction	1	463.25	52.83	173.68	66.94	118.42	46.66	67.82
124	ER35a	ExonRegion	1	479.72	60.18	167.62	65.07	165.44	50.94	84.60
125	E35_Da	NovelBoundary	1	127.59	5.25	59.65	20.18	1.06	16.27	5.42
126	E35a_E36a	KnownJunction	1	913.57	63.10	252.00	47.73	184.31	55.07	138.90
127	I35	Intron	1	131.35	1.82	51.30	9.04	2.29	8.58	2.70
128	I35_AR1	ActiveIntronRegion	1	132.18	1.83	51.62	9.10	2.30	8.63	2.72
129	E36_Aa	NovelBoundary	1	171.56	1.63	69.55	10.19	2.05	12.60	0.00
130	ER36a	ExonRegion	1	831.24	70.61	243.16	90.33	137.72	74.69	131.04
131	E36a_E37a	KnownJunction	1	534.04	79.58	121.24	95.25	123.03	81.90	87.24
132	ER37a	ExonRegion	1	800.03	85.28	241.20	99.67	178.34	75.66	123.84
133	E37a_E38a	KnownJunction	1	357.53	51.57	108.81	79.24	100.37	55.98	66.60
134	E37a_E39a	NovelJunction	1	41.22	2.68	5.22	7.61	5.05	5.25	1.99
135	ER38a	ExonRegion	1	303.12	59.58	88.36	74.31	96.06	56.26	65.30
136	E38a_E39a	KnownJunction	0	244.19	54.38	100.91	63.45	75.98	42.08	52.09
137	ER39a	ExonRegion	0	191.29	39.87	71.38	66.02	65.18	59.09	55.01
138	E39a_E40a	KnownJunction	0	189.26	35.31	69.67	51.69	51.20	57.75	51.74
139	I39	Intron	0	10.66	1.32	6.61	1.80	8.80	1.68	2.00
140	I39_AR2	ActiveIntronRegion	0	14.71	1.31	10.26	1.73	12.55	2.31	2.23
141	I39_AR3	ActiveIntronRegion	0	10.55	2.14	5.26	1.25	12.32	1.69	1.23
142	I39_AR4	ActiveIntronRegion	0	7.47	0.51	6.03	1.57	8.39	3.56	2.64
143	ER40a	ExonRegion	0	147.27	36.30	60.53	58.57	49.12	57.74	30.01
144	ER40b	ExonRegion	1	23.05	3.64	8.13	3.74	8.91	1.23	1.35
145	ER40c	ExonRegion	0	5.32	1.21	0.92	1.25	2.78	0.00	0.63
146	ER40d	ExonRegion	0	0.00	1.21	0.00	1.25	0.00	0.00	0.00
147	IG10	Intergenic	0	10.37	1.00	5.17	0.64	8.51	0.56	0.93
148	IG10_SR3	SilentIntergenicRegion	0	17.08	1.85	4.97	0.62	8.15	0.00	1.93
149	IG10_AR4	ActiveIntergenicRegion	0	13.99	0.55	6.07	0.98	10.00	0.00	0.85
150	IG10_SR2	SilentIntergenicRegion	0	6.58	0.00	4.76	0.67	11.03	0.55	0.18