Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	COX7A2L	Gene	0	89.40	90.06	81.22	67.89	187.03	78.22	278.60
2	378669	Transcript	0	2.93	1.50	1.87	1.17	3.03	2.16	4.44
3	234301	Transcript	0	0	0	0	0	0	0	0
4	407053	Transcript	0	0.26	0.06	0.09	0.03	0.34	0.47	0.46
5	397185	Transcript	0	5.74	1.63	3.62	0.77	29.30	1.37	2.26
6	IG50	Intergenic	0	0.49	0.31	0.31	0.38	12.00	0.86	0.01
7	IG50_SR5	SilentIntergenicRegion	0	0.78	0.16	0.94	0.62	30.18	1.01	0.04
8	IG50_AR6	ActiveIntergenicRegion	0	0.59	1.25	0.37	0.28	51.29	1.95	0.00
9	IG50_SR4	SilentIntergenicRegion	0	0.44	0.63	0.82	0.22	44.47	0.84	0.00
10	IG50_AR3	ActiveIntergenicRegion	0	0.32	0.76	0.63	0.00	32.42	0.62	0.00
11	IG50_SR3	SilentIntergenicRegion	0	0.48	0.35	0.70	1.16	44.91	2.51	0.00
12	IG50_AR2	ActiveIntergenicRegion	0	0.56	0.00	0.86	0.44	43.26	0.89	0.00
13	IG50_SR2	SilentIntergenicRegion	0	0.15	0.11	0.21	0.31	8.91	0.70	0.00
14	ER1a	ExonRegion	0	1.22	0.60	0.24	0.00	3.12	0.01	0.00
15	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	ER2a	ExonRegion	0	0.76	1.20	0.60	1.43	0.87	0.76	0.34
17	E2_Ab	KnownBoundary	0	0.88	1.02	0.69	0.00	0.95	0.00	0.89
18	E2_Ac	KnownBoundary	0	6.53	6.96	4.57	6.69	4.06	2.25	20.88
19	ER2b	ExonRegion	0	5.38	8.50	6.94	9.04	4.45	5.52	26.14
20	ER2c	ExonRegion	0	145.89	218.34	154.50	143.62	530.63	141.91	523.83
21	E2a_E3a	KnownJunction	0	54.31	216.11	63.27	123.40	68.81	158.95	258.75
22	ER3a	ExonRegion	0	205.58	310.61	206.93	197.38	316.16	231.27	769.67
23	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	E3a_E5a	KnownJunction	0	0.65	0.00	0.00	0.00	3.67	0.00	0.00
25	E3a_E6a	KnownJunction	0	284.95	289.85	320.50	191.56	1143.26	259.29	982.03
26	ER4a	ExonRegion	0	0.77	0.17	0.26	0.10	1.03	1.40	1.39
27	E4a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	E5_Aa	NovelBoundary	1	25.72	7.12	11.80	8.78	7.35	0.99	7.70
29	ER5a	ExonRegion	0	16.57	4.90	10.86	2.32	84.23	4.11	6.77
30	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	ER6a	ExonRegion	0	258.70	317.39	284.71	222.08	912.07	309.66	945.92
32	E6_Da	KnownBoundary	0	180.22	322.25	206.31	225.10	372.33	287.94	771.96
33	ER6b	ExonRegion	0	280.58	260.03	248.05	206.98	542.47	230.55	862.00
34	E6_Db	KnownBoundary	0	13.84	3.52	17.07	2.03	12.52	6.16	18.20
35	E6_Dc	KnownBoundary	0	9.41	0.00	6.78	4.66	1.01	2.81	9.92
36	ER6c	ExonRegion	0	28.43	10.93	30.35	11.22	37.42	14.22	77.04
37	ER6d	ExonRegion	0	9.75	4.20	6.62	3.24	8.11	7.87	17.44
38	IG49	Intergenic	0	14.93	6.32	6.14	7.59	1.79	10.41	2.40
39	IG49_SR4	SilentIntergenicRegion	0	15.94	5.83	5.21	5.92	1.51	12.79	2.36
40	IG49_AR4	ActiveIntergenicRegion	0	22.16	9.12	8.18	9.87	1.58	13.65	2.26
41	IG49_SR3	SilentIntergenicRegion	0	13.89	7.61	4.81	9.20	1.76	8.66	2.11
42	IG49_AR3	ActiveIntergenicRegion	0	13.69	7.38	7.41	12.08	0.72	15.01	3.33
43	IG49_SR2	SilentIntergenicRegion	0	12.93	5.90	6.35	8.11	1.48	12.32	2.40
44	IG49_AR2	ActiveIntergenicRegion	0	9.60	5.04	5.55	8.26	3.47	10.49	2.49
45	IG49_AR1	ActiveIntergenicRegion	0	18.81	5.42	8.75	5.61	3.07	6.67	3.07