Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 FAM82A1 Gene 0 4.50 0.40 10.56 3.79 4.33 4.49 3.06 2 404848 Transcript 0 1.15 0.00 2.66 0.84 0.55 0.22 0.31 3 354545 Transcript 0 0 0 0 0 0 0 0 4 406384 Transcript 0 0.16 0.00 0.00 0.00 0.00 0.00 0.00 5 407257 Transcript 0 0.20 0.00 0.10 0.00 0.01 0.12 0.02 6 234195 Transcript 0 10.31 0.30 1.42 0.61 0.00 2.07 0.00 7 406963 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 402091 Transcript 0 1.62 0.10 3.27 1.04 0.09 0.38 0.86 9 357809 Transcript 0 0.04 0.00 0.35 0.00 0.00 0.41 0.06 10 ER1a ExonRegion 0 1.93 0.00 1.23 2.34 1.01 0.00 0.00 11 E1_Ab KnownBoundary 0 4.36 0.00 5.09 5.34 2.17 0.00 2.16 12 ER1b ExonRegion 0 2.56 0.71 3.53 5.13 2.89 0.96 1.01 13 E1a_E3a KnownJunction 0 0.77 1.18 6.19 2.82 7.63 0.00 2.54 14 ER2a ExonRegion 0 0.33 0.00 0.00 0.00 0.00 0.00 0.00 15 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 ER3a ExonRegion 0 8.95 0.52 28.28 7.81 10.62 11.79 6.78 17 E3_Da KnownBoundary 0 6.36 1.60 32.06 12.57 15.47 18.33 7.24 18 E3a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER3b ExonRegion 0 11.22 1.12 35.29 12.20 14.19 14.74 10.54 20 E3b_E7a KnownJunction 0 8.86 1.50 26.79 10.59 19.62 10.21 5.68 21 ER4a ExonRegion 0 0.82 0.00 0.40 0.00 0.00 0.50 0.08 22 E4_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 1.66 0.00 23 ER4b ExonRegion 0 2.04 0.00 0.68 0.00 0.00 1.23 1.21 24 E4_Ad KnownBoundary 0 2.07 0.00 0.50 0.00 0.00 1.26 0.89 25 ER4c ExonRegion 0 1.54 0.00 0.60 0.00 0.00 1.23 1.35 26 ER4d ExonRegion 0 1.75 0.00 2.41 0.00 0.00 0.33 1.79 27 E4a_E6b KnownJunction 0 0.73 0.00 2.07 0.00 0.00 0.00 0.87 28 ER5a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 ER6a ExonRegion 0 0.11 0.00 1.06 0.00 0.00 1.23 0.19 30 ER6b ExonRegion 0 2.99 0.40 4.20 0.72 0.54 0.78 1.08 31 E6_Da KnownBoundary 0 5.79 0.00 5.45 1.49 0.88 0.00 1.49 32 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 ER6c ExonRegion 0 2.20 0.00 4.00 0.24 0.60 1.85 1.48 34 E6_Db KnownBoundary 0 1.95 0.00 4.05 0.00 0.00 1.42 2.11 35 E6b_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER6d ExonRegion 0 1.62 0.10 3.27 1.04 0.09 0.38 0.86 37 ER7a ExonRegion 0 10.28 0.60 32.50 9.63 17.28 12.01 8.97 38 E7a_E8a KnownJunction 0 11.92 1.21 26.53 10.73 16.30 8.92 6.85 39 ER8a ExonRegion 0 12.86 1.07 25.73 8.40 18.95 12.61 9.16 40 E8a_E9a KnownJunction 0 9.71 0.00 19.60 14.03 23.84 13.53 7.15 41 ER9a ExonRegion 0 10.81 0.00 27.04 10.49 16.22 10.09 6.89 42 E9a_E10a KnownJunction 0 9.20 0.00 27.63 6.99 10.60 5.68 6.95 43 ER10a ExonRegion 0 10.61 0.00 22.01 6.99 14.41 11.36 5.41 44 E10a_E11a KnownJunction 0 9.40 0.00 20.68 10.40 15.03 10.05 4.18 45 ER11a ExonRegion 0 6.32 0.00 28.98 10.93 14.49 7.01 6.15 46 E11a_E12b KnownJunction 0 2.07 0.00 32.03 7.04 16.90 7.80 7.68 47 ER12a ExonRegion 0 0.28 0.00 3.20 1.02 1.18 0.89 1.23 48 ER12b ExonRegion 0 3.13 1.43 25.56 11.45 11.99 10.68 7.12 49 E12a_E13a KnownJunction 0 1.59 2.65 15.98 7.78 9.64 12.22 6.46 50 ER13a ExonRegion 0 2.58 2.34 17.29 8.29 8.23 10.04 9.28 51 E13a_E14a KnownJunction 0 4.89 1.26 12.03 8.37 9.61 5.90 8.66 52 ER14a ExonRegion 0 3.22 1.33 17.00 10.61 8.04 9.16 7.10 53 E14a_E16a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54 E14a_E17a KnownJunction 0 2.27 2.94 14.37 9.21 3.04 9.62 4.87 55 E14a_E17b KnownJunction 0 2.40 0.00 6.19 0.00 0.00 0.00 0.00 56 E14a_E18a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57 ER15a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58 ER16a ExonRegion 0 0.00 0.00 0.01 0.00 0.05 0.00 0.01 59 E16a_E17a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 60 ER17a ExonRegion 0 3.38 1.72 12.90 8.51 5.56 7.24 6.73 61 E17_Ab KnownBoundary 0 1.70 0.00 9.90 3.33 4.50 3.70 4.70 62 E17_Da KnownBoundary 0 2.02 0.00 1.72 4.96 2.28 0.00 2.61 63 E17_Db KnownBoundary 0 0.87 0.00 8.77 4.14 4.47 3.89 1.56 64 ER17b ExonRegion 0 4.92 0.00 12.78 12.19 7.51 6.24 7.94 65 ER17c ExonRegion 0 3.84 0.00 16.82 13.72 7.83 7.36 7.42 66 ER17d ExonRegion 0 2.01 0.63 11.43 6.08 4.04 8.49 3.06 67 E17_Dc KnownBoundary 0 2.65 0.00 0.70 0.00 0.00 2.81 1.78 68 ER17e ExonRegion 0 1.30 0.00 0.40 0.51 0.43 2.19 0.56 69 E17_Dd NovelBoundary 0 0.73 0.00 0.00 0.00 0.00 7.85 0.00 70 I17_SR5 SilentIntronRegion 0 13.84 0.41 2.85 0.32 0.04 2.49 0.21 71 E18_Aa NovelBoundary 0 88.26 1.34 19.14 0.00 0.00 11.26 0.00 72 ER18a ExonRegion 0 20.62 0.59 2.83 1.21 0.00 4.13 0.00 73 IG17 Intergenic 0 17.81 0.40 6.52 0.41 0.09 14.05 0.67 74 IG17_AR1 ActiveIntergenicRegion 0 11.45 0.00 4.54 0.00 0.13 8.51 0.08 75 IG17_AR2 ActiveIntergenicRegion 0 36.52 1.54 12.53 1.55 0.00 30.45 2.31