Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	FANCL	Gene	0	37.11	16.28	20.56	12.25	293.98	8.43	17.40
2	233741	Transcript	0	1.00	0.32	1.69	1.25	16.41	0.00	0.25
3	402135	Transcript	0	9.22	1.79	2.85	4.62	22.53	7.00	4.72
4	403295	Transcript	0	0.00	0.61	0.34	0.00	5.17	0.00	0.17
5	403676	Transcript	0	0.60	0.00	0.00	1.68	2.35	0.00	0.00
6	ER1a	ExonRegion	0	1.00	0.32	1.69	1.25	16.41	0.00	0.25
7	E1_Ac	KnownBoundary	0	5.46	4.20	4.25	1.35	107.91	1.55	0.89
8	ER1b	ExonRegion	0	8.14	5.04	7.58	2.49	95.14	0.00	2.70
9	E1_Ad	KnownBoundary	1	49.64	11.80	26.83	17.80	525.10	3.06	20.61
10	ER1c	ExonRegion	1	35.35	11.40	20.81	15.08	371.49	1.52	15.23
11	ER1d	ExonRegion	1	57.27	15.98	28.89	25.04	454.24	6.51	24.94
12	E1a_E2a	KnownJunction	0	6.08	8.07	6.16	2.98	55.86	5.60	2.46
13	E1a_E6a	KnownJunction	0	0.60	0.00	0.00	1.68	2.35	0.00	0.00
14	ER2a	ExonRegion	0	14.72	17.96	12.49	18.13	58.84	11.26	15.76
15	E2a_E3a	KnownJunction	0	27.24	24.70	21.44	31.94	81.17	12.94	33.69
16	ER3a	ExonRegion	0	71.40	24.78	34.38	21.87	298.32	10.23	36.31
17	E3a_E4a	KnownJunction	0	63.81	14.29	33.50	7.96	706.45	6.99	18.27
18	ER4a	ExonRegion	0	32.60	19.40	26.47	7.35	710.77	12.39	19.81
19	E4a_E5a	KnownJunction	0	16.81	19.13	20.13	6.07	417.95	12.17	18.47
20	ER5a	ExonRegion	0	20.11	19.87	18.31	11.64	213.36	8.24	13.75
21	E5a_E6a	KnownJunction	0	25.30	18.21	16.68	15.88	194.47	4.50	12.84
22	ER6a	ExonRegion	0	41.38	19.84	24.11	14.46	324.07	10.82	15.34
23	E6a_E7a	KnownJunction	1	61.29	21.99	34.63	17.28	433.81	6.91	12.70
24	ER7a	ExonRegion	0	61.10	24.84	31.30	15.42	478.72	8.44	18.43
25	E7a_E8a	KnownJunction	0	38.84	13.40	15.20	10.65	312.90	4.18	12.97
26	E7b_E8a	KnownJunction	0	8.14	1.55	2.49	4.42	20.54	6.65	4.40
27	ER7b	ExonRegion	0	10.30	2.02	3.21	4.82	24.51	7.36	5.04
28	I7_AR3	ActiveIntronRegion	0	14.86	1.93	5.22	0.94	27.22	1.00	1.54
29	I7_SR4	SilentIntronRegion	1	15.68	0.87	2.30	1.85	23.53	0.00	3.82
30	I7_SR5	SilentIntronRegion	0	13.55	2.75	4.22	2.12	44.38	0.83	2.21
31	ER8a	ExonRegion	0	73.94	24.65	29.36	19.20	485.36	13.92	21.35
32	E8a_E9a	KnownJunction	0	63.32	33.13	25.84	15.06	440.17	10.59	18.17
33	E8a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	2.24	0.00	0.00
34	I8	Intron	0	13.49	4.20	9.92	2.41	19.22	3.13	3.78
35	I8_AR1	ActiveIntronRegion	0	15.78	4.02	10.69	2.63	22.03	4.02	2.85
36	I8_AR2	ActiveIntronRegion	0	14.75	6.28	12.46	2.76	19.16	2.98	6.85
37	E9_Aa	NovelBoundary	0	24.18	9.27	15.23	9.02	27.89	2.25	9.06
38	ER9a	ExonRegion	0	54.70	25.31	27.51	13.55	414.66	11.30	23.14
39	E9_Da	NovelBoundary	0	30.61	15.84	25.22	5.36	19.94	11.90	13.79
40	E9a_E10a	KnownJunction	0	42.44	9.51	16.81	3.74	364.67	7.50	18.10
41	E9a_E12a	NovelJunction	0	8.09	5.57	1.22	2.36	15.40	1.63	0.00
42	I9	Intron	0	11.39	4.15	10.19	2.47	16.34	2.08	8.02
43	I9_AR1	ActiveIntronRegion	0	11.47	4.17	10.26	2.48	16.45	2.10	8.07
44	E10_Aa	NovelBoundary	0	16.61	4.78	8.94	1.30	14.71	4.42	6.74
45	ER10a	ExonRegion	0	44.25	11.94	20.01	4.83	420.91	5.30	19.94
46	E10_Da	NovelBoundary	0	41.69	7.33	21.79	6.23	29.67	7.42	10.50
47	E10a_E11a	KnownJunction	0	31.34	12.40	13.54	6.77	422.90	5.17	16.19
48	I10_AR1	ActiveIntronRegion	0	6.99	4.61	8.93	2.34	16.26	3.46	3.19
49	E11_Aa	NovelBoundary	0	34.82	18.94	14.82	12.03	32.02	10.43	13.89
50	ER11a	ExonRegion	0	59.31	16.82	30.05	10.36	418.86	10.45	26.98
51	E11_Da	NovelBoundary	1	78.26	25.01	50.21	6.64	34.63	8.01	27.47
52	E11a_E12a	KnownJunction	0	62.34	12.22	33.50	12.38	488.70	8.79	25.72
53	I11	Intron	1	37.77	17.97	25.29	5.49	35.23	7.32	22.11
54	I11_AR1	ActiveIntronRegion	1	37.85	18.01	25.35	5.50	35.31	7.34	22.16
55	E12_Aa	NovelBoundary	0	40.37	12.58	34.60	4.85	35.29	4.72	12.58
56	ER12a	ExonRegion	0	70.14	35.55	39.19	24.14	450.54	19.67	41.27
57	E12_Da	NovelBoundary	0	37.00	19.83	36.67	8.15	21.99	15.60	25.68
58	E12a_E13a	KnownJunction	0	43.39	22.07	21.37	18.80	379.77	10.56	24.23
59	I12	Intron	1	97.34	35.57	55.52	9.32	54.13	12.89	45.92
60	I12_AR1	ActiveIntronRegion	1	94.08	33.33	53.30	9.47	55.31	11.77	46.79
61	I12_SR1	SilentIntronRegion	1	106.98	41.93	61.98	8.99	51.35	16.05	43.92
62	E13_Aa	NovelBoundary	1	53.47	43.51	36.37	10.21	19.00	7.10	38.61
63	ER13a	ExonRegion	0	51.50	28.13	32.31	23.61	439.42	16.14	27.66
64	E13_Da	NovelBoundary	1	64.84	44.08	54.45	9.75	44.70	12.89	43.07
65	E13a_E14a	KnownJunction	0	45.50	23.22	33.93	19.42	432.15	13.40	22.43
66	I13	Intron	1	46.01	22.68	31.64	3.97	34.86	6.49	29.99
67	I13_SR1	SilentIntronRegion	1	46.14	26.45	27.26	3.44	36.41	6.44	32.11
68	I13_SR2	SilentIntronRegion	1	56.09	23.42	41.04	5.43	39.43	7.63	33.64
69	I13_AR1	ActiveIntronRegion	1	8.85	5.98	12.95	0.28	14.73	3.09	8.27
70	E14_Aa	NovelBoundary	1	77.79	35.70	45.93	8.80	59.04	13.05	39.68
71	ER14a	ExonRegion	0	25.27	14.71	14.23	15.32	337.85	8.53	8.29
72	E14_Da	KnownBoundary	0	37.49	32.73	24.37	12.30	237.91	17.80	23.96
73	ER14b	ExonRegion	0	10.24	4.83	7.93	3.54	97.50	2.83	7.15
74	ER14c	ExonRegion	0	0.00	1.21	0.68	0.00	10.93	0.00	0.67
75	ER14d	ExonRegion	0	0.00	1.21	0.68	0.00	8.10	0.00	0.34