Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 CCDC88A Gene 0 9.68 6.23 34.05 21.99 180.54 14.93 77.31 2 263630 Transcript 0 8.47 4.44 27.45 16.32 105.99 4.63 67.90 3 336838 Transcript 0 8.50 1.22 23.27 13.39 197.78 7.15 36.52 4 ER1a ExonRegion 0 5.25 5.61 16.17 13.21 45.34 8.56 30.13 5 E1a_E2a KnownJunction 0 9.18 7.54 30.97 24.92 97.33 11.95 63.26 6 ER2a ExonRegion 0 6.53 4.29 28.49 21.75 96.48 10.71 59.83 7 E2a_E3a KnownJunction 0 6.14 2.86 31.99 14.98 100.69 8.92 59.46 8 ER3a ExonRegion 0 10.84 6.31 33.63 23.60 97.11 10.69 73.08 9 E3a_E4a KnownJunction 0 9.71 2.89 30.87 25.90 72.59 15.70 55.46 10 ER4a ExonRegion 0 6.36 3.52 34.31 22.93 119.34 11.70 69.96 11 E4a_E5a KnownJunction 0 6.38 8.04 35.26 17.39 123.42 9.65 71.83 12 ER5a ExonRegion 0 8.73 7.12 48.08 20.65 122.16 7.44 71.52 13 E5a_E6a KnownJunction 0 11.73 4.78 43.71 18.77 130.32 4.18 72.20 14 ER6a ExonRegion 0 14.00 8.76 45.53 20.86 158.64 8.63 75.78 15 E6_Da NovelBoundary 1 5.84 0.00 20.82 0.00 0.00 0.00 0.56 16 E6a_E7a KnownJunction 0 9.66 8.77 44.09 23.00 132.46 8.15 67.46 17 ER7a ExonRegion 0 6.92 7.76 38.08 20.41 136.73 12.10 79.87 18 E7a_E8a KnownJunction 0 12.33 8.59 40.45 20.35 165.96 11.98 91.05 19 ER8a ExonRegion 0 8.41 12.72 33.82 34.59 167.85 17.01 79.45 20 E8a_E9a KnownJunction 0 12.37 9.30 22.76 40.26 115.56 18.33 81.76 21 ER9a ExonRegion 0 7.28 15.59 27.89 38.23 148.79 13.44 86.59 22 E9a_E10a KnownJunction 0 4.16 16.71 26.73 31.97 167.66 12.54 69.42 23 ER10a ExonRegion 1 7.53 9.04 29.98 29.76 132.39 7.02 78.17 24 E10a_E11a KnownJunction 0 6.46 8.20 35.12 28.88 124.67 14.04 71.03 25 ER11a ExonRegion 0 9.99 8.12 36.26 29.55 142.63 11.84 84.54 26 E11a_E12a KnownJunction 0 11.18 5.52 36.52 18.77 118.84 8.44 73.58 27 ER12a ExonRegion 0 9.90 4.73 40.09 28.83 137.18 11.06 83.25 28 E12a_E13a KnownJunction 0 8.80 3.21 32.92 22.62 122.18 10.21 67.76 29 ER13a ExonRegion 0 9.93 3.65 40.72 23.50 125.38 17.97 72.33 30 E13a_E14a KnownJunction 0 11.20 4.23 58.19 16.72 148.32 24.58 83.44 31 ER14a ExonRegion 0 9.76 10.43 44.71 26.35 116.61 18.76 82.28 32 E14a_E15a KnownJunction 0 10.82 6.67 47.45 23.73 120.77 22.08 81.42 33 ER15a ExonRegion 0 10.98 4.92 39.77 19.29 123.55 12.54 71.52 34 E15a_E16a KnownJunction 0 7.56 4.02 44.88 23.46 187.42 19.40 90.98 35 ER16a ExonRegion 0 6.98 5.94 41.02 15.93 121.48 14.80 91.33 36 E16a_E17a KnownJunction 0 8.28 6.52 30.91 17.64 114.07 4.37 67.34 37 E16a_E17b KnownJunction 0 4.14 1.63 7.10 6.61 22.64 3.00 16.37 38 ER17a ExonRegion 0 9.22 5.16 32.51 16.21 112.97 5.82 74.71 39 ER17b ExonRegion 0 7.81 5.94 39.86 20.86 152.51 15.91 93.16 40 E17a_E18a KnownJunction 0 7.13 4.12 39.53 14.82 133.45 13.13 77.53 41 ER18a ExonRegion 0 12.66 7.68 42.54 24.78 214.35 15.85 101.96 42 E18a_E19a KnownJunction 0 22.75 12.87 56.71 30.56 417.44 26.80 132.35 43 ER19a ExonRegion 0 29.32 12.06 62.18 36.58 310.54 22.78 134.99 44 E19a_E20a KnownJunction 0 35.77 13.32 66.51 35.68 291.85 30.36 159.19 45 ER20a ExonRegion 0 20.91 6.06 49.47 26.76 269.78 23.33 99.20 46 E20a_E21a KnownJunction 0 16.22 2.34 49.45 18.75 161.51 19.91 80.99 47 ER21a ExonRegion 0 14.66 5.01 47.71 23.13 181.12 18.12 82.77 48 E21a_E22a KnownJunction 0 11.28 6.17 48.14 29.58 151.80 15.89 88.77 49 ER22a ExonRegion 0 12.93 7.12 55.28 24.30 239.18 16.49 97.73 50 E22a_E23a KnownJunction 0 21.13 9.20 52.84 24.19 297.80 20.58 120.96 51 E22a_E24a NovelJunction 0 3.77 1.97 12.00 7.31 10.40 0.00 6.25 52 ER23a ExonRegion 0 31.92 14.61 82.08 32.76 412.52 22.00 140.90 53 E23a_E24a KnownJunction 0 40.42 11.40 102.70 33.46 449.60 15.22 225.56 54 ER24a ExonRegion 0 32.03 11.59 68.52 27.55 303.70 19.66 139.15 55 E24a_E25a KnownJunction 0 19.84 10.14 47.03 33.51 218.93 13.40 96.46 56 ER25a ExonRegion 0 21.87 12.51 57.79 28.27 329.96 13.99 126.02 57 E25a_E26a KnownJunction 1 12.68 1.55 29.90 12.35 301.19 7.21 41.00 58 E25a_E27a KnownJunction 0 7.91 1.63 18.91 15.12 90.94 3.70 61.65 59 ER26a ExonRegion 0 10.03 1.71 30.56 17.13 237.18 9.01 45.09 60 E26a_E27a KnownJunction 0 7.16 0.00 25.52 17.45 230.11 9.38 43.64 61 ER27a ExonRegion 0 16.49 9.48 48.80 34.11 326.36 18.04 115.60 62 E27a_E28a KnownJunction 0 6.06 14.53 30.75 25.47 302.98 17.18 76.03 63 ER28a ExonRegion 0 14.29 9.77 37.37 32.96 347.31 18.34 127.51 64 E28a_E29a KnownJunction 0 19.09 6.17 36.97 33.46 318.43 15.65 155.95 65 E28a_E30a NovelJunction 0 0.68 0.00 1.45 8.32 8.51 0.00 0.89 66 ER29a ExonRegion 0 10.76 8.10 34.10 22.58 263.41 14.14 130.17 67 E29a_E30a KnownJunction 0 7.24 2.13 31.15 19.78 214.30 19.75 97.94 68 E30_Aa NovelBoundary 0 2.34 3.26 15.36 1.11 23.01 3.78 14.26 69 ER30a ExonRegion 0 11.71 10.53 44.70 32.05 303.89 21.77 132.51 70 E30a_E31a KnownJunction 0 15.15 19.55 55.77 39.20 332.08 36.96 118.98 71 ER31a ExonRegion 0 10.78 11.84 44.14 33.55 252.17 27.08 119.19 72 E31_Da NovelBoundary 1 3.71 3.97 1.55 0.00 104.20 2.47 30.74 73 E31a_E32a KnownJunction 0 7.16 5.23 27.96 32.54 183.25 24.41 94.04 74 I31_AR1 ActiveIntronRegion 0 2.11 0.56 1.82 2.00 52.49 1.35 12.76 75 ER32a ExonRegion 0 6.81 4.52 34.22 23.61 216.58 22.72 88.24 76 E32a_E33a KnownJunction 1 2.72 2.15 32.41 17.15 125.34 23.50 61.12 77 ER33a ExonRegion 0 5.26 3.51 22.10 17.23 179.63 13.97 60.12