Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RTN4	Gene	0	916.08	919.58	795.41	1273.00	818.38	1105.37	825.45
2	404909	Transcript	0	0.26	1.64	0.61	2.54	0.02	0.42	0.00
3	317610	Transcript	1	241.00	997.08	360.49	1423.20	464.12	991.38	651.99
4	337526	Transcript	0	0	0	0	0	0	0	0
5	357732	Transcript	1	15.39	51.02	27.84	38.66	24.11	44.30	57.05
6	394611	Transcript	0	0.00	0.00	0.00	1.33	0.00	0.00	0.00
7	354474	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	357376	Transcript	0	2.84	2.86	5.08	3.77	0.18	0.40	0.67
9	405240	Transcript	0	0.55	0.00	0.24	0.00	0.86	0.00	0.00
10	402434	Transcript	0	0	0	0	0	0	0	0
11	394609	Transcript	0	9.95	6.54	10.87	3.93	1.50	1.46	17.38
12	IG32_AR1	ActiveIntergenicRegion	0	2.33	8.23	9.11	15.78	0.56	9.71	0.44
13	ER1a	ExonRegion	0	0.52	3.29	1.22	5.09	0.04	0.84	0.00
14	E1a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	ER2a	ExonRegion	0	31.76	209.14	42.41	306.58	121.47	168.75	88.52
16	E2_Da	KnownBoundary	1	173.86	816.60	206.89	1126.45	115.29	747.07	541.41
17	E2a_E5a	KnownJunction	0	0.00	0.00	0.00	1.33	0.00	0.00	0.00
18	ER2b	ExonRegion	1	95.27	764.39	110.41	885.78	70.05	692.57	322.72
19	E2_Ab	KnownBoundary	1	138.49	1136.98	171.01	1292.68	170.01	937.67	414.01
20	ER2c	ExonRegion	0	190.49	1067.06	206.38	1254.92	246.95	1038.11	506.20
21	E2_Db	KnownBoundary	1	156.52	1191.59	129.48	1428.49	109.57	1228.21	536.24
22	E2b_E6c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	ER2d	ExonRegion	1	104.42	673.83	99.50	822.06	117.92	672.30	298.83
24	E2c_E5a	KnownJunction	0	28.22	61.11	18.51	144.86	65.26	125.50	30.77
25	E2c_E8a	KnownJunction	0	241.00	997.08	360.49	1423.20	464.12	991.38	651.99
26	ER3a	ExonRegion	0	5.69	5.73	10.15	7.54	0.37	0.80	1.35
27	E3a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	ER4a	ExonRegion	0	1.10	0.00	0.49	0.00	1.72	0.00	0.00
29	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	ER5a	ExonRegion	0	33.88	109.76	34.37	195.66	70.22	159.70	54.58
31	E5a_E6a	KnownJunction	0	18.09	86.75	11.22	158.89	42.83	96.93	3.01
32	E5a_E8a	KnownJunction	1	15.39	51.02	27.84	38.66	24.11	44.30	57.05
33	ER6a	ExonRegion	0	21.26	87.87	19.19	159.82	39.28	102.78	2.92
34	ER6b	ExonRegion	0	76.63	121.98	72.51	276.84	98.75	189.88	7.87
35	E6_Ac	KnownBoundary	0	112.36	137.93	99.31	349.42	127.92	289.25	4.63
36	ER6c	ExonRegion	0	101.85	134.57	88.90	286.60	179.41	223.45	17.62
37	E6a_E8a	KnownJunction	0	28.92	111.81	31.03	213.86	146.59	181.51	10.38
38	ER7a	ExonRegion	0	19.89	7.39	21.75	6.74	3.00	2.92	19.85
39	E7a_E8a	KnownJunction	0	0.00	5.70	0.00	1.11	0.00	0.00	14.92
40	ER8a	ExonRegion	0	924.96	2581.11	1126.56	3264.36	1343.99	2578.11	1904.77
41	E8a_E9a	KnownJunction	0	1949.45	3334.79	2004.20	4107.50	2268.40	3159.29	2515.47
42	ER9a	ExonRegion	0	3452.88	3799.23	2856.08	5141.29	3488.80	4141.90	3519.18
43	E9a_E10a	KnownJunction	0	4127.96	4445.26	3327.39	6219.98	3365.99	4852.90	3579.73
44	E9a_E11a	NovelJunction	0	17.74	111.05	17.03	65.26	4.47	101.65	18.73
45	E9a_E12a	NovelJunction	0	40.84	127.68	30.90	155.96	14.06	159.03	29.64
46	E9a_E13a	NovelJunction	1	6.76	106.19	5.40	29.83	1.18	78.26	2.41
47	ER10a	ExonRegion	0	5627.24	4501.50	4042.75	6182.47	4316.10	4878.10	3992.50
48	E10a_E11a	KnownJunction	0	5559.05	3547.88	3766.05	5306.06	5249.02	4376.27	3741.95
49	E10a_E12a	NovelJunction	1	104.83	47.53	20.77	54.10	5.19	27.42	15.92
50	E11_Aa	NovelBoundary	1	247.48	132.85	233.47	87.40	49.89	84.02	36.50
51	ER11a	ExonRegion	0	5031.75	3804.62	3690.79	5685.56	4992.67	4626.23	3812.56
52	E11a_E12a	KnownJunction	0	3265.57	3089.23	2576.16	4621.82	4285.62	3581.25	2708.65
53	E11a_E13a	NovelJunction	1	0.00	92.97	2.93	19.72	3.32	11.66	0.00
54	E12_Aa	NovelBoundary	1	1658.26	98.54	1329.44	90.57	28.19	85.95	29.74
55	ER12a	ExonRegion	0	5193.11	3906.67	3856.11	5827.73	4669.51	4662.18	3634.56
56	E12a_E13a	KnownJunction	0	6794.92	4434.57	4730.77	6747.50	4481.17	5766.53	4039.15
57	ER13a	ExonRegion	0	4461.04	3020.55	3445.63	4207.50	3200.38	3508.90	2944.74
58	E13_Da	KnownBoundary	0	1809.66	1236.20	1456.62	1853.98	1466.94	1655.21	1440.85
59	ER13b	ExonRegion	0	2048.61	1765.82	2141.64	2260.37	1718.69	2521.75	2331.26
60	ER13c	ExonRegion	0	74.35	78.66	99.07	106.93	123.50	102.68	120.25
61	IG31	Intergenic	0	4.58	1.94	9.66	7.99	1.76	5.41	4.72
62	IG31_AR6	ActiveIntergenicRegion	0	2.31	0.00	11.52	1.25	0.13	0.00	2.70
63	IG31_SR5	SilentIntergenicRegion	0	2.35	0.87	11.85	1.18	1.55	0.54	4.17
64	IG31_AR5	ActiveIntergenicRegion	0	3.18	1.21	11.52	2.49	1.39	1.23	4.34
65	IG31_SR4	SilentIntergenicRegion	0	2.99	1.44	11.73	3.98	1.21	2.04	3.35
66	IG31_AR4	ActiveIntergenicRegion	0	6.83	1.79	11.81	8.06	3.34	5.95	7.18
67	IG31_AR3	ActiveIntergenicRegion	0	6.70	2.37	7.53	10.11	3.27	5.86	3.73
68	IG31_SR2	SilentIntergenicRegion	0	2.24	3.23	6.49	9.81	0.32	7.06	2.32
69	IG31_AR2	ActiveIntergenicRegion	0	3.71	0.93	9.11	13.92	1.73	9.29	3.14
70	IG31_AR1	ActiveIntergenicRegion	0	4.16	1.36	8.97	7.79	0.86	4.01	3.17