Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ASB3	Gene	0	40.47	25.93	47.02	42.01	86.30	52.14	25.73
2	406625	Transcript	0	2.84	5.41	3.45	9.57	0.06	4.62	2.89
3	394721	Transcript	0	1.15	3.95	0.34	2.49	3.85	3.06	0.00
4	406687	Transcript	0	1.48	2.49	1.32	1.71	2.10	1.17	1.53
5	394717	Transcript	0	9.46	6.52	3.18	5.72	18.47	8.25	0.00
6	352846	Transcript	0	0	0	0	0	0	0	0
7	263634	Transcript	0	0	0	0	0	0	0	0
8	406053	Transcript	0	5.54	0.95	2.91	1.70	13.26	1.06	0.86
9	IG23	Intergenic	0	10.89	5.15	14.43	11.41	2.56	5.82	18.63
10	IG23_SR2	SilentIntergenicRegion	0	11.35	4.73	13.94	9.84	2.71	4.81	16.45
11	IG23_AR1	ActiveIntergenicRegion	0	11.73	7.50	18.34	16.34	2.45	6.65	25.25
12	IG23_SR1	SilentIntergenicRegion	0	8.52	4.30	12.30	11.97	2.15	8.51	19.67
13	ER1a	ExonRegion	0	5.68	10.81	6.89	19.15	0.11	9.23	5.77
14	E1_Ab	KnownBoundary	1	4.26	7.20	11.19	32.21	3.41	3.00	8.60
15	ER1b	ExonRegion	0	1.30	1.64	0.26	4.30	0.35	0.21	1.89
16	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	E1b_E3a	KnownJunction	0	0.00	0.00	0.00	1.25	0.00	0.00	0.00
18	ER1c	ExonRegion	0	2.31	7.90	0.68	3.74	7.69	6.13	0.00
19	Ix	Intron	1	21.06	11.33	23.41	23.36	4.86	14.95	25.99
20	Ix_AR3	ActiveIntronRegion	0	17.20	5.82	15.09	11.82	2.91	9.41	19.80
21	Ix_SR2	SilentIntronRegion	0	20.54	7.41	23.66	17.28	4.21	13.41	24.24
22	Ix_AR2	ActiveIntronRegion	0	30.62	15.33	32.97	37.04	7.04	23.19	32.10
23	Ix_AR1	ActiveIntronRegion	0	26.64	20.59	31.80	36.68	6.82	19.67	38.56
24	I1	Intron	0	35.69	11.17	24.32	22.86	5.35	19.93	18.41
25	I1_AR1	ActiveIntronRegion	0	38.17	4.55	24.04	7.96	9.10	6.25	11.41
26	I1_AR2	ActiveIntronRegion	1	32.11	3.64	22.21	10.69	4.05	1.40	13.40
27	I1_AR3	ActiveIntronRegion	0	50.17	4.86	36.48	13.18	8.45	8.58	20.91
28	I1_AR4	ActiveIntronRegion	0	52.25	5.67	37.11	17.18	7.20	9.67	22.71
29	I1_SR1	SilentIntronRegion	1	24.46	4.85	13.81	8.97	5.10	6.44	10.67
30	I1_AR5	ActiveIntronRegion	1	71.52	27.32	60.22	39.02	13.01	34.15	46.48
31	I1_SR3	SilentIntronRegion	0	67.38	22.27	48.89	31.55	17.47	28.44	30.69
32	I1_AR9	ActiveIntronRegion	0	60.86	17.39	37.40	37.69	8.18	40.65	26.50
33	I1_SR4	SilentIntronRegion	1	13.44	4.45	7.93	14.39	0.63	9.50	7.63
34	I1_AR3	ActiveIntronRegion	1	7.76	3.31	5.71	8.58	0.63	8.86	7.97
35	I1_SR5	SilentIntronRegion	0	10.19	2.02	3.93	9.41	0.63	7.98	5.20
36	I1_AR5	ActiveIntronRegion	0	10.72	5.15	6.63	10.82	2.31	12.70	5.11
37	I1	Intron	0	7.02	3.62	4.36	9.04	0.77	4.95	4.80
38	I1_SR1	SilentIntronRegion	0	7.49	4.18	4.34	9.45	0.92	4.31	5.17
39	I1_AR2	ActiveIntronRegion	0	7.45	2.64	5.77	10.32	0.27	8.97	4.93
40	E2_Ab	NovelBoundary	0	13.72	11.90	4.02	4.98	7.28	9.06	6.09
41	ER2a	ExonRegion	0	2.05	1.21	0.45	0.00	0.54	1.23	2.47
42	ER2b	ExonRegion	0	30.31	21.27	25.01	37.70	78.89	44.42	26.71
43	E2_Da	KnownBoundary	0	0.00	2.68	0.82	1.03	5.16	1.02	0.75
44	E2a_E3a	KnownJunction	0	12.00	25.72	27.30	31.56	304.30	50.97	26.71
45	E2a_E4a	KnownJunction	0	9.46	6.52	3.18	5.72	18.47	8.25	0.00
46	ER2c	ExonRegion	0	2.40	6.27	3.52	5.13	5.77	2.27	2.12
47	E2b_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
48	ER3a	ExonRegion	0	22.20	34.97	29.70	43.27	193.05	51.13	27.93
49	E3_Ab	KnownBoundary	0	34.31	41.61	37.82	58.06	63.67	49.98	38.94
50	ER3b	ExonRegion	0	65.46	45.62	80.61	89.31	114.61	116.64	52.60
51	E3a_E4a	KnownJunction	0	57.41	46.92	70.53	97.85	345.12	141.88	43.95
52	ER4a	ExonRegion	0	87.92	75.37	110.35	111.63	183.39	159.66	57.01
53	E4a_E5a	KnownJunction	0	86.24	75.74	103.96	122.94	154.27	123.79	52.08
54	ER5a	ExonRegion	0	85.06	76.91	117.37	101.95	174.50	131.40	58.45
55	E5a_E6a	KnownJunction	0	75.32	69.91	97.23	124.62	132.39	116.23	56.48
56	ER6a	ExonRegion	0	65.24	80.24	97.52	97.27	168.60	121.34	62.37
57	E6a_E7a	KnownJunction	0	65.42	79.05	114.68	102.97	161.32	89.19	55.95
58	ER7a	ExonRegion	0	55.66	70.70	97.70	100.13	160.48	122.54	61.01
59	E7a_E8a	KnownJunction	0	41.37	60.98	90.25	92.98	168.65	114.89	71.03
60	ER8a	ExonRegion	0	59.69	45.71	78.67	84.98	136.90	88.09	49.82
61	E8a_E9a	KnownJunction	0	82.20	37.86	91.63	91.32	139.31	78.93	50.86
62	I8_SR2	SilentIntronRegion	0	12.73	4.41	9.98	3.63	13.32	3.23	4.44
63	E9_Aa	NovelBoundary	1	16.57	8.88	10.68	6.80	17.08	6.51	2.05
64	ER9a	ExonRegion	0	150.15	62.91	149.49	125.40	263.07	135.14	71.74
65	E9_Da	NovelBoundary	0	7.91	8.59	11.60	9.37	11.71	12.11	1.43
66	E9a_E10a	KnownJunction	0	103.79	42.72	108.87	82.68	251.76	117.25	62.28
67	ER10a	ExonRegion	0	64.08	44.11	96.15	82.78	189.87	100.76	62.83
68	E10a_E11a	KnownJunction	0	69.13	38.44	103.68	56.78	188.92	83.13	59.70
69	E10a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
70	ER11a	ExonRegion	0	62.62	31.99	81.87	53.27	103.87	89.22	44.79
71	E11_Da	KnownBoundary	0	12.60	1.05	13.51	3.90	26.53	8.92	2.82
72	E11_Db	KnownBoundary	1	8.75	6.23	22.09	14.49	70.31	42.16	4.59
73	ER11b	ExonRegion	1	9.19	3.55	13.70	7.19	36.04	18.63	3.89
74	ER11c	ExonRegion	0	23.38	13.05	37.05	28.17	47.77	52.00	13.90
75	ER12a	ExonRegion	0	0.00	0.00	0.00	2.13	0.00	1.05	0.00
76	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
77	ER13a	ExonRegion	1	22.15	3.78	11.66	4.67	53.03	3.21	3.43