Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 PSME4 Gene 0 594.96 500.23 466.32 700.53 358.17 386.07 222.26 2 378234 Transcript 0 16.33 6.49 12.38 6.94 3.65 3.03 6.66 3 404125 Transcript 0 46.87 55.96 43.56 99.03 36.65 48.07 40.18 4 389993 Transcript 0 0 0 0 0 0 0 0 5 185162 Transcript 0 0 0 0 0 0 0 0 6 IG24_AR6 ActiveIntergenicRegion 0 1.65 2.43 0.00 0.18 9.60 2.45 0.00 7 IG24_AR4 ActiveIntergenicRegion 0 6.29 6.17 1.35 3.07 11.37 6.07 4.61 8 IG24_AR3 ActiveIntergenicRegion 0 2.67 1.82 2.51 0.10 8.14 0.00 3.77 9 ER1a ExonRegion 0 20.82 21.22 20.08 25.39 6.57 17.42 5.65 10 E1_Ab KnownBoundary 0 32.04 44.06 20.58 52.69 1.18 29.40 1.58 11 ER1b ExonRegion 0 75.36 136.05 66.86 165.02 15.73 101.96 26.32 12 E1a_E2a KnownJunction 0 178.57 286.52 194.69 352.51 71.21 206.55 73.66 13 ER2a ExonRegion 0 223.20 393.87 260.51 468.77 84.04 283.29 108.25 14 E2_Da KnownBoundary 0 278.10 501.13 319.97 579.75 80.94 367.05 130.53 15 E2a_E22b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 ER2b ExonRegion 0 427.96 542.35 427.90 624.36 111.23 348.53 142.71 17 E2b_E3a KnownJunction 1 542.34 506.30 480.87 644.28 91.68 321.25 115.80 18 ER3a ExonRegion 0 597.47 541.21 580.77 739.36 182.06 376.33 186.86 19 E3a_E4a KnownJunction 0 691.75 399.59 654.53 599.44 186.29 321.41 176.76 20 E3a_E5a NovelJunction 1 13.22 41.75 15.68 19.94 2.93 14.15 0.69 21 ER4a ExonRegion 0 802.85 569.63 731.36 802.27 220.05 416.84 197.45 22 E4a_E5a KnownJunction 0 608.90 534.65 518.35 750.29 243.71 359.97 139.26 23 ER5a ExonRegion 0 636.64 586.38 598.66 749.91 227.39 339.79 207.11 24 E5a_E6a KnownJunction 0 487.23 521.88 461.23 626.37 230.92 291.88 177.82 25 ER6a ExonRegion 0 462.66 538.79 467.94 629.79 204.65 297.53 193.05 26 E6a_E7a KnownJunction 0 417.65 506.99 423.41 645.36 212.73 289.81 188.44 27 ER7a ExonRegion 0 417.67 533.44 459.92 695.49 214.44 310.31 207.49 28 E7a_E8a KnownJunction 0 443.13 564.65 476.32 663.30 207.66 360.30 229.62 29 E8_Aa NovelBoundary 1 189.35 1.44 186.23 6.50 0.00 1.50 1.38 30 ER8a ExonRegion 0 387.00 588.96 453.93 687.74 206.33 350.67 217.47 31 E8a_E9a KnownJunction 0 342.68 579.36 423.75 661.43 225.00 349.39 207.65 32 ER9a ExonRegion 0 386.82 616.87 453.26 698.74 266.65 330.78 226.59 33 E9a_E10a KnownJunction 0 410.24 582.07 464.28 717.51 318.94 293.56 236.84 34 ER10a ExonRegion 0 537.17 721.77 588.03 939.83 311.36 404.21 317.00 35 E10a_E11a KnownJunction 0 445.91 482.37 424.47 755.35 299.27 323.85 232.41 36 ER11a ExonRegion 0 427.32 513.22 443.21 711.74 266.91 303.23 231.68 37 E11a_E12a KnownJunction 0 495.87 538.70 498.35 737.23 357.20 334.49 240.08 38 ER12a ExonRegion 0 484.87 525.05 494.18 708.79 343.23 335.51 244.07 39 E12a_E13a KnownJunction 0 483.19 538.49 501.15 721.03 277.83 336.98 237.56 40 ER13a ExonRegion 0 513.53 606.70 563.77 773.46 293.56 384.68 268.17 41 E13a_E14a KnownJunction 0 417.78 557.35 473.49 700.98 268.77 341.83 248.38 42 ER14a ExonRegion 0 457.36 515.05 505.30 663.37 266.67 296.75 242.96 43 E14a_E15a KnownJunction 0 392.30 336.25 380.91 463.12 274.05 210.83 164.73 44 ER15a ExonRegion 0 383.04 351.58 389.83 462.74 235.50 213.21 178.34 45 E15a_E16a KnownJunction 0 527.47 375.55 480.79 511.99 291.71 230.96 199.74 46 ER16a ExonRegion 0 611.79 368.52 464.33 513.00 375.01 289.14 201.56 47 E16a_E17a KnownJunction 0 822.63 443.25 523.47 602.13 472.65 377.85 250.56 48 ER17a ExonRegion 0 1013.17 542.52 701.17 766.07 339.04 398.81 294.46 49 E17a_E18a KnownJunction 0 867.19 611.99 675.12 902.62 234.01 408.83 261.38 50 ER18a ExonRegion 0 737.62 540.56 552.10 760.53 333.55 355.64 242.36 51 E18a_E19a KnownJunction 0 327.41 443.67 316.85 566.75 165.87 282.15 137.50 52 ER19a ExonRegion 0 384.12 498.26 380.45 646.37 240.56 290.25 191.41 53 E19a_E20a KnownJunction 0 460.26 472.75 444.75 678.06 290.47 382.14 234.55 54 E20_Aa NovelBoundary 1 209.54 3.02 199.73 1.52 0.00 0.00 3.17 55 ER20a ExonRegion 0 495.92 547.01 455.23 725.24 259.30 329.61 202.16 56 E20a_E21a KnownJunction 0 403.66 413.41 396.45 565.39 223.08 246.93 174.64 57 ER21a ExonRegion 0 475.51 485.53 470.21 662.89 265.63 309.06 226.18 58 E21a_E22a KnownJunction 0 454.83 451.55 434.47 657.42 318.22 338.53 209.32 59 ER22a ExonRegion 0 579.61 515.56 513.85 672.42 322.46 340.40 218.57 60 E22a_E23a KnownJunction 0 605.98 475.49 455.54 595.44 338.99 276.52 177.51 61 ER22b ExonRegion 0 663.39 526.03 541.07 668.15 354.19 334.05 208.65 62 ER23a ExonRegion 0 644.44 491.52 543.38 656.48 343.97 331.02 227.24 63 E23a_E24a KnownJunction 0 530.36 437.94 505.16 591.75 330.07 297.96 213.08 64 ER24a ExonRegion 0 853.39 606.04 679.56 865.00 436.35 379.75 266.68 65 E24a_E25a KnownJunction 0 1078.22 683.53 729.77 975.52 450.80 465.00 244.68 66 ER25a ExonRegion 0 1036.90 708.36 720.76 1041.87 514.44 473.16 274.58 67 E25a_E26a KnownJunction 0 1011.68 684.06 681.20 1021.06 532.98 452.54 272.84 68 ER26a ExonRegion 0 1332.80 656.17 822.50 996.49 700.95 435.82 297.08 69 E26a_E27a KnownJunction 1 1459.80 738.41 880.46 1089.82 653.69 488.40 282.95 70 ER27a ExonRegion 0 1276.95 727.60 786.31 994.04 670.13 475.16 309.66 71 E27a_E28a KnownJunction 0 865.42 469.84 558.49 659.59 762.22 339.98 270.71 72 ER28a ExonRegion 0 757.86 634.29 599.56 842.10 510.16 422.99 315.76 73 E28a_E29a KnownJunction 0 552.20 579.84 531.08 769.90 419.54 413.28 326.50 74 E28a_E30a NovelJunction 0 71.23 83.99 36.83 92.52 7.03 66.76 18.37 75 ER29a ExonRegion 0 544.92 498.93 521.27 642.71 418.63 378.09 274.89 76 E29a_E30a KnownJunction 0 487.55 434.69 426.45 537.62 514.59 316.32 245.71 77 ER30a ExonRegion 0 715.86 496.54 623.29 644.36 526.04 417.07 306.93 78 E30a_E31a KnownJunction 0 667.23 439.94 600.80 612.07 544.28 414.08 267.18 79 ER31a ExonRegion 0 1051.33 654.17 694.83 918.17 523.16 590.64 304.36 80 E31a_E32a KnownJunction 0 1275.65 869.51 822.76 1188.27 549.93 778.10 351.71 81 ER32a ExonRegion 0 1442.09 891.96 932.15 1299.40 742.31 798.14 409.45 82 E32a_E33a KnownJunction 0 1444.60 773.19 772.55 1172.39 928.45 691.27 369.56 83 ER33a ExonRegion 0 991.69 561.78 614.71 819.08 571.82 461.76 249.93 84 E33a_E34a KnownJunction 0 676.66 432.03 488.52 597.28 396.28 298.98 182.32 85 E33a_E35a NovelJunction 1 30.83 22.67 3.49 31.32 0.00 47.09 2.14 86 E33a_E36a NovelJunction 1 3.12 3.97 3.26 15.28 0.00 20.58 0.00 87 ER34a ExonRegion 0 734.50 427.27 532.52 600.79 488.48 327.43 220.30 88 E34a_E35a KnownJunction 0 853.94 354.93 650.24 542.01 525.47 271.80 209.08 89 ER35a ExonRegion 0 1106.03 477.83 808.01 762.56 477.61 451.01 268.07 90 E35a_E36a KnownJunction 0 1212.42 553.75 885.34 928.85 367.25 557.54 309.67 91 ER36a ExonRegion 0 833.93 482.25 657.62 755.15 407.64 434.56 246.55 92 E36a_E37a KnownJunction 0 545.41 391.65 463.03 575.69 311.01 288.79 214.41 93 E36a_E38a NovelJunction 0 46.06 43.53 38.57 31.10 13.60 31.76 4.93 94 ER37a ExonRegion 0 462.83 409.49 440.07 609.08 365.75 342.81 252.23 95 E37a_E38a KnownJunction 0 425.91 413.64 425.05 647.56 481.09 395.83 254.88 96 ER38a ExonRegion 0 482.85 508.84 487.44 785.53 480.06 425.58 275.71 97 E38a_E39a KnownJunction 0 478.77 518.73 453.89 758.33 369.51 431.45 297.61 98 ER39a ExonRegion 0 532.84 617.33 474.98 867.22 437.04 467.10 312.37 99 E39a_E40a KnownJunction 0 800.67 691.96 587.57 1019.84 575.58 573.46 394.37 100 ER40a ExonRegion 0 1345.13 695.94 744.49 1027.68 846.64 534.32 317.45 101 E40a_E41a KnownJunction 1 1840.27 840.55 954.69 1290.13 1006.79 616.23 310.05 102 ER41a ExonRegion 0 1614.25 881.77 839.57 1202.61 967.87 689.74 330.15 103 E41a_E42a KnownJunction 0 1313.98 715.08 654.35 1059.70 768.28 600.48 285.40 104 ER42a ExonRegion 0 937.96 734.45 606.50 975.32 652.53 584.20 281.58 105 E42a_E43a KnownJunction 0 565.46 739.17 463.10 918.01 576.41 634.59 274.65 106 ER43a ExonRegion 0 559.49 619.88 486.18 874.05 553.14 533.60 259.39 107 E43a_E44a KnownJunction 0 359.75 408.52 329.50 686.03 545.96 433.89 217.39 108 E43a_E45a NovelJunction 0 13.50 55.30 32.95 90.29 0.00 68.42 3.75 109 I43 Intron 0 161.66 69.66 101.20 80.44 15.60 55.72 43.09 110 I43_AR1 ActiveIntronRegion 0 306.13 135.30 194.01 164.14 28.00 121.42 83.86 111 E44_Aa NovelBoundary 0 175.36 119.09 117.97 164.04 23.51 92.11 79.85 112 ER44a ExonRegion 0 622.13 627.36 471.08 964.10 508.55 581.03 297.85 113 E44a_E45a KnownJunction 0 505.82 583.59 368.99 855.54 452.62 553.23 270.32 114 E45_Aa NovelBoundary 1 236.68 27.32 182.35 26.09 1.15 15.81 9.00 115 ER45a ExonRegion 0 596.97 667.26 448.00 970.70 549.81 617.38 335.79 116 E45a_E46a KnownJunction 0 516.29 656.68 398.81 986.52 380.44 653.24 301.85 117 E46_Ab NovelBoundary 0 405.33 457.52 352.58 726.94 312.64 473.93 226.24 118 ER46a ExonRegion 0 549.94 676.37 452.10 1018.14 421.46 683.80 334.82 119 ER46b ExonRegion 0 549.74 696.84 482.84 1031.49 460.97 736.33 334.73 120 ER46c ExonRegion 0 671.89 834.04 517.48 1203.57 626.17 781.49 361.50 121 E46_Db KnownBoundary 0 84.77 39.67 69.04 43.18 14.98 28.73 35.31 122 E46b_E47a KnownJunction 0 682.45 810.71 467.05 1083.91 565.62 795.28 356.67 123 ER46d ExonRegion 0 32.67 12.99 24.75 13.88 7.31 6.07 13.32 124 ER47a ExonRegion 0 373.49 353.20 261.20 553.08 252.48 399.17 153.46 125 E47_Da KnownBoundary 0 32.91 39.88 35.70 74.28 34.97 48.51 26.99 126 ER47b ExonRegion 0 46.87 55.96 43.56 99.03 36.65 48.07 40.18 127 IG23 Intergenic 0 10.89 5.15 14.43 11.41 2.56 5.82 18.63 128 IG23_SR2 SilentIntergenicRegion 0 11.35 4.73 13.94 9.84 2.71 4.81 16.45 129 IG23_AR1 ActiveIntergenicRegion 0 11.73 7.50 18.34 16.34 2.45 6.65 25.25 130 IG23_SR1 SilentIntergenicRegion 0 8.52 4.30 12.30 11.97 2.15 8.51 19.67