Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CEP68	Gene	0	28.42	25.90	21.70	17.13	89.48	16.09	14.49
2	377990	Transcript	1	15.61	26.80	9.05	2.55	107.89	2.49	14.98
3	260569	Transcript	0	0.00	0.00	0.00	0.00	1.08	0.00	0.85
4	394371	Transcript	0	6.69	8.08	6.49	8.42	4.96	5.95	3.22
5	IG8	Intergenic	0	3.79	5.49	1.38	7.83	4.70	20.76	0.26
6	IG8_SR1	SilentIntergenicRegion	0	4.09	6.91	1.49	10.63	4.64	32.05	0.39
7	IG8_AR1	ActiveIntergenicRegion	0	9.22	9.52	2.25	13.92	10.75	38.79	0.32
8	IG8_SR2	SilentIntergenicRegion	0	4.39	4.56	1.62	8.09	4.88	19.75	0.18
9	IG8_AR6	ActiveIntergenicRegion	0	3.37	10.49	1.43	8.81	6.56	25.69	0.00
10	IG8_AR7	ActiveIntergenicRegion	0	7.21	11.93	0.72	13.73	5.76	41.79	0.43
11	IG8_SR3	SilentIntergenicRegion	0	6.00	14.57	0.73	10.37	4.93	51.59	0.26
12	IG8_AR8	ActiveIntergenicRegion	0	3.46	6.94	0.21	10.35	3.47	24.67	0.00
13	IG8_SR4	SilentIntergenicRegion	0	2.68	4.49	1.10	5.20	4.96	12.09	0.21
14	IG8_AR10	ActiveIntergenicRegion	0	3.33	3.25	2.37	5.41	1.17	10.85	0.00
15	IG8_AR11	ActiveIntergenicRegion	0	1.54	5.55	0.00	2.49	9.72	6.13	1.83
16	ER1a	ExonRegion	0	2.41	6.39	1.38	2.17	9.57	4.86	2.78
17	E1_Ab	KnownBoundary	1	11.18	20.81	3.33	5.72	45.88	6.67	14.98
18	ER1b	ExonRegion	1	8.82	20.74	4.70	7.38	81.38	4.94	12.05
19	E1a_E2a	NovelJunction	0	2.77	8.85	1.03	2.65	17.59	2.95	3.18
20	E1a_E3a	KnownJunction	0	0.58	0.00	0.59	0.00	1.15	0.00	0.00
21	E1b_E2a	KnownJunction	0	4.52	8.98	2.80	2.63	17.89	2.06	5.00
22	ER1c	ExonRegion	0	6.53	12.76	3.89	6.86	16.20	4.90	7.08
23	I1	Intron	0	12.93	18.13	9.94	19.82	5.83	17.77	3.63
24	I1_SR1	SilentIntronRegion	0	8.38	9.67	5.64	11.63	5.03	12.54	1.81
25	I1_AR1	ActiveIntronRegion	0	8.79	7.02	6.54	10.12	4.20	7.70	1.47
26	I1_SR3	SilentIntronRegion	0	8.39	18.22	6.91	21.17	4.57	18.28	3.15
27	I1_AR2	ActiveIntronRegion	0	16.56	22.59	9.88	21.31	5.21	22.65	5.57
28	I1_SR4	SilentIntronRegion	0	37.27	25.21	27.26	31.80	6.28	40.46	9.02
29	I1_AR3	ActiveIntronRegion	0	25.23	22.84	18.69	31.56	8.07	25.02	5.35
30	I1_SR5	SilentIntronRegion	0	18.68	27.79	14.33	29.29	7.07	22.34	5.89
31	I1_AR4	ActiveIntronRegion	0	31.32	30.18	19.93	27.55	12.75	23.57	6.83
32	I1_SR6	SilentIntronRegion	0	13.81	18.59	14.56	18.43	6.78	21.39	4.39
33	I1_AR5	ActiveIntronRegion	0	13.50	28.71	10.97	27.17	6.50	19.69	4.88
34	I1_SR7	SilentIntronRegion	0	11.31	16.98	10.87	22.62	2.75	20.24	3.50
35	E2_Aa	NovelBoundary	0	11.23	26.74	11.42	25.19	1.91	16.75	6.22
36	ER2a	ExonRegion	0	15.89	42.49	15.02	18.87	51.78	25.54	17.81
37	E2_Da	NovelBoundary	0	3.34	21.60	7.30	15.79	4.24	22.22	2.09
38	E2a_E3a	KnownJunction	1	16.54	46.89	10.00	6.12	73.22	31.68	17.67
39	I2	Intron	0	9.83	20.02	12.04	21.44	3.08	19.66	4.82
40	I2_SR1	SilentIntronRegion	0	7.28	19.79	9.18	19.34	2.49	23.09	5.71
41	I2_SR2	SilentIntronRegion	0	12.31	18.33	9.16	20.16	2.34	22.39	5.65
42	I2_AR1	ActiveIntronRegion	1	9.22	18.02	9.48	19.74	2.83	9.81	8.10
43	I2_SR3	SilentIntronRegion	0	7.21	19.04	6.48	16.03	3.50	11.53	3.85
44	I2_AR2	ActiveIntronRegion	0	12.05	21.40	17.95	26.32	3.45	21.84	4.65
45	E3_Aa	NovelBoundary	0	8.18	17.39	7.86	12.87	3.04	15.25	5.00
46	ER3a	ExonRegion	0	21.52	52.22	16.49	21.99	110.05	21.91	23.90
47	E3_Da	KnownBoundary	1	41.82	54.85	19.39	17.34	134.58	14.23	15.39
48	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	1.08	0.00	0.85
49	ER3b	ExonRegion	1	29.05	44.40	19.07	33.99	108.10	11.82	17.09
50	E3_Db	KnownBoundary	0	7.99	24.06	14.50	11.70	5.19	9.17	7.21
51	E3b_E4a	KnownJunction	1	15.61	26.80	9.05	2.55	107.89	2.49	14.98
52	ER3c	ExonRegion	0	14.59	18.47	13.60	22.16	3.09	15.43	8.23
53	E3_Dc	NovelBoundary	0	18.29	20.75	14.43	35.06	1.98	23.53	13.59
54	E3c_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
55	I3	Intron	0	7.47	10.71	4.75	6.39	2.37	7.19	6.43
56	I3_SR1	SilentIntronRegion	0	7.56	10.87	4.82	6.51	2.39	7.32	6.51
57	E4_Aa	NovelBoundary	0	10.55	27.37	16.58	23.73	0.99	26.80	13.23
58	ER4a	ExonRegion	0	25.82	41.18	18.20	19.90	125.49	27.16	24.34
59	E4_Da	KnownBoundary	0	18.31	28.82	11.41	15.09	14.89	12.35	10.12
60	E4a_E5a	KnownJunction	0	10.25	8.80	8.32	2.98	68.44	3.64	3.70
61	ER4b	ExonRegion	0	11.57	13.85	11.77	11.52	15.60	8.38	4.64
62	E4_Db	NovelBoundary	1	11.50	12.19	14.99	10.40	9.36	10.59	3.47
63	I4	Intron	0	7.83	9.20	8.28	9.13	9.68	7.28	3.71
64	I4_SR1	SilentIntronRegion	0	6.22	9.00	6.68	7.66	9.04	6.80	3.05
65	I4_AR1	ActiveIntronRegion	0	14.76	10.08	15.18	15.48	12.43	9.36	6.54
66	E5_Aa	NovelBoundary	0	11.72	8.35	6.88	15.09	18.95	12.19	6.74
67	ER5a	ExonRegion	0	12.15	8.92	12.07	5.05	97.36	10.34	12.70
68	E5_Da	NovelBoundary	0	10.20	7.12	11.75	8.64	6.32	12.97	9.26
69	E5a_E6a	KnownJunction	0	8.36	3.84	12.09	5.72	100.21	9.11	11.54
70	I5	Intron	0	7.97	8.48	7.45	5.84	8.12	6.69	5.11
71	I5_SR1	SilentIntronRegion	0	7.87	7.91	7.33	6.11	8.43	6.89	4.96
72	I5_AR1	ActiveIntronRegion	0	9.19	11.89	8.00	4.83	7.32	6.11	5.87
73	E6_Aa	NovelBoundary	1	10.56	12.48	7.01	3.68	7.24	1.42	3.04
74	ER6a	ExonRegion	0	21.20	14.09	16.91	5.75	116.34	8.92	9.26
75	E6_Da	NovelBoundary	0	12.38	7.38	8.26	5.85	4.38	7.42	4.80
76	E6a_E7a	KnownJunction	0	27.29	11.14	13.01	2.84	156.81	3.19	7.38
77	I6	Intron	0	8.59	11.90	5.87	7.24	3.37	3.21	5.01
78	I6_SR1	SilentIntronRegion	0	9.46	13.66	5.58	5.89	3.84	4.01	3.75
79	I6_AR1	ActiveIntronRegion	0	7.39	12.42	6.25	8.34	3.39	3.88	6.11
80	I6_AR2	ActiveIntronRegion	0	9.77	8.58	5.58	7.00	2.74	0.82	4.66
81	E7_Aa	NovelBoundary	0	8.85	8.22	10.25	7.12	3.00	5.44	5.13
82	ER7a	ExonRegion	0	43.49	19.76	31.60	14.31	134.07	16.42	15.72