Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AC110754.4	Gene	0	27.03	6.10	6.60	1.27	35.70	7.70	4.52
2	381486	Transcript	0	0.00	0.00	0.00	0.00	1.51	0.00	0.00
3	389823	Transcript	0	0	0	0	0	0	0	0
4	389824	Transcript	0	0	0	0	0	0	0	0
5	234142	Transcript	0	5.28	0.91	0.85	0.16	6.78	1.53	2.28
6	263834	Transcript	0	1.94	1.86	0.44	0.45	3.19	0.34	0.15
7	381484	Transcript	0	0	0	0	0	0	0	0
8	389825	Transcript	0	0.00	0.00	0.68	0.00	2.43	0.00	0.00
9	381483	Transcript	0	4.71	0.45	1.21	0.00	5.01	0.45	0.00
10	396123	Transcript	0	0.26	0.00	0.50	0.00	0.30	0.00	7.34
11	396126	Transcript	0	0	0	0	0	0	0	0
12	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	1.51	0.00	0.00
13	ER1b	ExonRegion	0	0.26	0.00	0.00	0.00	2.14	0.00	0.00
14	E1a_E4a	KnownJunction	0	0.82	0.00	0.00	0.00	0.00	0.00	0.00
15	ER2a	ExonRegion	0	1.19	1.40	0.00	0.61	0.00	0.58	0.00
16	E2a_E4a	KnownJunction	0	0.67	4.18	0.00	0.00	0.00	0.00	0.00
17	ER3a	ExonRegion	0	4.44	0.00	0.00	0.00	0.00	0.00	0.00
18	E3_Ab	KnownBoundary	0	9.45	0.00	0.89	0.00	0.00	0.00	0.00
19	ER3b	ExonRegion	0	7.37	1.00	0.00	0.00	0.00	0.00	0.00
20	E3a_E4b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	E3b_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	ER3c	ExonRegion	0	0.00	0.00	0.00	0.00	0.16	0.00	0.00
23	ER4a	ExonRegion	0	5.38	4.86	0.00	0.00	0.61	0.92	0.00
24	ER4b	ExonRegion	0	18.21	9.90	2.74	1.21	26.51	8.41	0.00
25	E4a_E5a	KnownJunction	0	11.27	13.74	2.66	0.00	19.62	7.05	0.00
26	ER5a	ExonRegion	0	16.48	7.87	2.88	0.79	33.95	6.49	0.00
27	E5a_E6a	KnownJunction	0	19.71	7.46	0.59	0.00	37.18	5.84	0.00
28	ER6a	ExonRegion	0	13.65	6.34	3.86	1.04	31.04	11.33	0.00
29	E6a_E7a	KnownJunction	0	17.67	4.70	6.05	0.00	37.88	15.87	0.00
30	ER7a	ExonRegion	0	18.04	4.87	7.57	0.50	36.17	17.36	0.00
31	E7a_E8a	KnownJunction	0	21.45	8.56	4.04	0.00	34.88	9.30	0.00
32	ER8a	ExonRegion	0	26.68	8.62	6.48	0.03	34.16	11.32	0.00
33	E8a_E9a	KnownJunction	0	29.89	12.48	8.12	0.00	37.65	19.62	0.00
34	ER9a	ExonRegion	0	33.11	10.69	5.34	0.00	32.43	11.11	0.00
35	E9_Da	KnownBoundary	0	1.54	5.67	0.89	0.00	18.12	4.61	0.00
36	E9a_E10a	KnownJunction	0	27.76	2.29	5.20	0.00	21.42	3.73	0.00
37	ER9b	ExonRegion	0	2.89	2.70	0.76	0.00	11.35	0.89	0.00
38	ER9c	ExonRegion	0	0.00	0.00	0.68	0.00	2.43	0.00	0.00
39	I9_SR2	SilentIntronRegion	0	4.75	0.26	0.97	0.00	9.93	0.62	0.00
40	E10_Aa	NovelBoundary	0	7.86	1.58	3.54	0.00	14.59	0.00	0.00
41	ER10a	ExonRegion	0	30.33	2.17	7.08	0.00	33.58	6.81	0.00
42	E10a_E11a	KnownJunction	0	47.67	1.52	3.94	0.00	19.94	8.44	0.00
43	ER11a	ExonRegion	0	28.70	3.33	5.05	0.00	28.04	10.15	0.36
44	E11a_E12a	KnownJunction	0	2.74	0.00	0.68	0.00	0.00	0.00	0.00
45	E11a_E13a	KnownJunction	0	31.59	8.80	8.28	0.00	31.40	9.78	0.00
46	ER12a	ExonRegion	0	4.21	0.00	1.05	0.00	3.42	0.43	0.00
47	E12_Da	KnownBoundary	0	4.92	0.00	0.00	0.00	3.02	1.50	0.00
48	ER12b	ExonRegion	0	3.96	0.00	1.32	0.73	9.56	0.44	0.46
49	ER13a	ExonRegion	0	20.45	5.60	2.43	0.96	33.06	6.92	0.00
50	E13a_E14a	KnownJunction	0	4.11	0.00	0.00	0.00	4.26	0.00	0.00
51	E13a_E15a	KnownJunction	0	2.45	3.13	0.68	0.00	4.24	4.15	0.00
52	ER14a	ExonRegion	0	7.23	0.00	0.68	0.00	4.55	0.00	0.00
53	ER14b	ExonRegion	0	9.41	0.90	2.42	0.00	10.02	0.90	0.00
54	E14_Db	NovelBoundary	0	44.48	10.30	40.70	32.32	24.07	28.11	101.29
55	ER15a	ExonRegion	0	11.46	3.68	2.84	0.03	13.33	3.79	0.00
56	E15a_E16a	KnownJunction	0	20.16	7.96	7.49	0.00	18.00	12.33	0.00
57	ER16a	ExonRegion	0	27.58	4.50	9.25	0.00	22.89	5.87	0.00
58	E16a_E17a	KnownJunction	0	43.51	2.76	11.53	0.00	21.83	12.25	0.00
59	ER17a	ExonRegion	0	37.07	4.01	16.79	0.95	48.37	9.25	0.00
60	E17a_E18a	KnownJunction	0	23.00	5.81	10.42	3.14	28.72	10.13	0.00
61	ER18a	ExonRegion	0	45.20	10.51	14.56	1.30	52.74	9.47	0.00
62	E18a_E19a	KnownJunction	0	28.02	7.70	12.39	0.00	42.86	10.64	0.00
63	ER19a	ExonRegion	0	48.51	9.72	13.05	0.00	56.02	7.43	0.00
64	E19a_E20a	KnownJunction	0	13.67	8.67	7.63	0.00	46.36	9.89	0.00
65	ER20a	ExonRegion	0	29.55	12.80	9.21	0.00	46.63	8.51	0.00
66	E20a_E21a	KnownJunction	0	20.46	15.55	8.58	0.00	48.53	6.30	0.00
67	ER21a	ExonRegion	0	23.66	10.92	9.19	0.00	47.34	6.09	0.00
68	E21a_E22a	KnownJunction	0	14.07	2.05	1.94	0.00	22.36	0.00	0.00
69	ER22a	ExonRegion	0	16.37	6.09	4.36	0.19	24.01	2.88	0.30
70	E22a_E24a	KnownJunction	0	23.10	6.86	3.42	3.09	27.69	4.93	0.00
71	ER23a	ExonRegion	0	0.26	0.00	0.50	0.00	0.30	0.00	7.34
72	E23a_E24a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	1.16
73	ER23b	ExonRegion	0	0.77	0.00	0.05	0.00	0.75	0.00	2.55
74	ER24a	ExonRegion	0	21.23	7.49	7.49	1.07	33.35	7.86	5.94
75	E24a_E25a	KnownJunction	0	29.14	5.91	5.50	0.00	43.13	13.16	11.29
76	ER25a	ExonRegion	0	24.73	5.84	8.89	0.95	34.65	12.76	9.50
77	E25a_E26a	KnownJunction	0	27.20	6.52	11.32	0.00	30.01	14.34	6.71
78	ER26a	ExonRegion	0	22.33	5.10	7.87	0.00	28.99	12.95	5.66
79	E26a_E27a	KnownJunction	0	15.94	6.99	7.29	0.00	40.07	18.36	8.83
80	ER27a	ExonRegion	0	16.74	4.63	5.00	0.45	26.36	7.07	6.22
81	E27a_E28a	KnownJunction	0	15.96	8.75	3.22	0.00	21.49	13.43	12.20
82	ER28a	ExonRegion	0	22.55	7.34	5.46	0.00	40.74	16.18	11.25
83	E28a_E29a	KnownJunction	0	29.81	5.49	6.57	0.00	66.78	19.86	10.79
84	ER29a	ExonRegion	0	41.95	10.06	10.48	0.60	77.55	11.27	15.47
85	E29a_E30a	KnownJunction	0	35.17	5.44	7.37	0.00	63.93	5.47	4.63
86	ER30a	ExonRegion	0	44.90	12.08	10.17	1.33	97.42	7.91	16.11
87	E30a_E31a	KnownJunction	0	38.79	11.61	10.92	0.00	62.54	11.71	12.84
88	E31_Aa	NovelBoundary	0	14.39	0.00	3.02	0.00	0.00	0.00	0.00
89	ER31a	ExonRegion	0	40.67	9.16	9.22	0.58	71.35	12.28	12.97
90	E31a_E32a	KnownJunction	0	45.70	11.66	13.80	0.00	100.33	18.22	11.15
91	ER32a	ExonRegion	0	39.43	7.12	9.59	0.00	75.08	12.32	11.09
92	E32a_E33a	KnownJunction	0	48.62	6.02	7.36	0.00	67.57	16.29	12.75
93	ER33a	ExonRegion	0	36.31	6.52	5.06	0.61	55.55	9.45	11.32
94	E33a_E34a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
95	E33a_E34b	KnownJunction	0	45.76	8.01	6.06	1.11	57.10	10.10	15.76
96	ER34a	ExonRegion	0	10.57	1.82	1.69	0.31	13.57	3.06	4.55
97	ER34b	ExonRegion	0	32.33	7.66	6.40	0.37	67.05	8.97	12.17
98	E34a_E35a	KnownJunction	0	23.62	7.70	11.41	0.00	70.20	12.17	9.40
99	ER35a	ExonRegion	0	29.54	6.73	6.12	0.00	45.83	11.06	10.53
100	E35a_E36a	KnownJunction	0	28.92	4.62	2.82	0.00	31.63	5.28	7.65
101	ER36a	ExonRegion	0	24.60	3.21	4.89	0.00	45.50	7.49	9.49
102	E36a_E37a	KnownJunction	0	21.51	0.00	0.73	0.00	32.92	10.56	2.51
103	E37_Aa	NovelBoundary	0	13.02	0.00	0.00	0.00	0.00	0.00	0.00
104	ER37a	ExonRegion	0	22.01	2.66	6.47	0.00	34.95	7.89	6.27
105	E37a_E38a	KnownJunction	0	22.70	2.42	8.82	0.00	35.41	4.93	6.84
106	ER38a	ExonRegion	0	51.98	9.88	11.70	4.27	52.95	12.68	8.76
107	ER38b	ExonRegion	0	0.00	0.00	0.34	0.00	1.62	0.00	0.00