Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	GPR113	Gene	0	0.97	1.38	1.25	2.63	4.15	1.40	0.69
2	333478	Transcript	0	0.42	0.65	0.79	1.84	1.42	1.08	0.44
3	311519	Transcript	0	0.19	0.63	0.42	0.78	2.52	0.21	0.29
4	ER1a	ExonRegion	0	2.29	3.97	1.84	4.90	0.70	5.07	1.46
5	E1a_E4a	KnownJunction	0	0.00	0.00	1.39	1.27	0.00	0.00	0.00
6	E2_Aa	NovelBoundary	0	0.68	1.37	0.63	1.68	10.44	0.00	0.64
7	ER2a	ExonRegion	0	0.00	0.52	0.29	1.06	4.37	0.00	0.00
8	E2_Da	NovelBoundary	0	0.00	0.00	1.61	1.54	8.00	0.00	1.55
9	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	I2	Intron	0	0.33	0.70	0.78	0.54	8.77	0.36	0.87
11	I2_SR1	SilentIntronRegion	0	0.33	0.70	0.78	0.54	8.80	0.36	0.88
12	ER3a	ExonRegion	0	0.52	0.00	0.00	0.78	5.00	0.00	0.00
13	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER4a	ExonRegion	0	0.00	0.00	1.15	1.94	0.22	0.00	0.28
15	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	2.82	1.06	0.00	0.85
16	I4	Intron	0	0.46	0.48	0.62	0.74	9.86	0.00	0.13
17	I4_SR1	SilentIntronRegion	0	0.46	0.48	0.62	0.74	9.91	0.00	0.13
18	E5_Aa	NovelBoundary	0	1.00	0.00	0.00	2.06	9.98	0.00	0.00
19	ER5a	ExonRegion	0	0.41	1.18	1.83	3.80	8.22	0.66	0.36
20	E5a_E6a	KnownJunction	0	0.00	1.23	1.49	1.41	0.00	0.00	1.30
21	E5a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	ER6a	ExonRegion	0	0.34	2.23	0.76	4.18	8.69	2.13	0.76
23	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	ER7a	ExonRegion	0	0.47	1.03	0.63	0.39	5.73	0.00	0.82
25	E7a_E8a	KnownJunction	0	0.00	1.31	0.00	0.00	0.00	0.00	0.00
26	I7_AR1	ActiveIntronRegion	0	0.56	0.58	0.57	1.21	8.65	0.00	1.13
27	ER8a	ExonRegion	0	0.95	2.72	0.71	2.70	9.61	1.75	0.44
28	E8a_E9a	KnownJunction	0	0.85	0.00	0.50	0.00	1.15	0.00	2.36
29	I8	Intron	0	0.72	0.00	0.67	0.50	7.84	0.73	0.40
30	I8_SR1	SilentIntronRegion	0	0.72	0.00	0.68	0.50	7.88	0.74	0.40
31	E9_Aa	NovelBoundary	0	0.00	0.00	0.73	0.00	9.73	1.66	1.38
32	ER9a	ExonRegion	0	0.43	0.00	1.90	1.32	5.00	0.00	1.50
33	E9a_E10a	KnownJunction	0	0.77	0.00	1.54	0.00	0.00	0.00	1.78
34	ER10a	ExonRegion	0	0.64	0.00	1.61	0.96	3.41	0.00	0.76
35	E10a_E11a	KnownJunction	0	0.00	0.00	2.08	0.00	2.07	0.00	0.00
36	ER11a	ExonRegion	0	0.32	1.54	3.19	2.50	6.33	0.56	1.48
37	E11_Da	NovelBoundary	0	0.00	2.34	1.57	4.52	8.58	0.00	0.00
38	E11a_E12a	KnownJunction	0	0.00	0.00	0.82	2.87	1.89	2.14	2.18
39	ER12a	ExonRegion	0	1.21	1.27	1.23	3.32	5.36	1.07	0.69
40	E12a_E13a	KnownJunction	0	0.00	0.00	1.31	1.33	2.14	1.45	0.00
41	ER13a	ExonRegion	0	0.42	0.00	2.79	2.94	1.45	0.00	0.24
42	E13a_E14a	KnownJunction	0	0.90	0.00	3.56	3.22	1.08	0.00	0.66
43	ER14a	ExonRegion	0	0.65	0.00	1.82	3.13	3.79	1.19	0.65
44	E14_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	3.20	0.00	0.00
45	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	2.95	3.20	1.23	0.00
46	ER14b	ExonRegion	0	0.59	0.00	1.04	0.00	1.40	0.00	0.00
47	ER15a	ExonRegion	0	0.00	0.00	0.57	2.32	2.85	0.33	0.61
48	E15_Da	NovelBoundary	0	0.77	0.00	0.00	0.00	9.96	0.00	0.00
49	E15a_E16a	KnownJunction	0	0.00	0.00	0.86	0.00	1.13	0.00	0.80
50	E16_Aa	NovelBoundary	0	0.80	0.00	0.85	0.00	9.38	0.00	0.00
51	ER16a	ExonRegion	0	0.68	0.59	0.87	1.41	2.09	0.90	0.24