Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	XDH	Gene	0	428.15	160.92	50.05	37.30	2.84	10.27	155.44
2	379416	Transcript	0	422.28	162.08	43.36	27.80	2.50	8.72	148.49
3	ER1a	ExonRegion	1	290.58	95.43	10.27	3.01	0.00	5.60	78.34
4	E1a_E2a	KnownJunction	1	267.99	90.72	9.51	0.00	0.00	4.53	73.12
5	ER2a	ExonRegion	1	109.99	92.04	4.04	0.62	0.73	6.32	47.93
6	E2a_E3a	KnownJunction	1	70.87	98.62	4.99	2.30	1.73	7.69	40.30
7	ER3a	ExonRegion	1	314.38	114.35	11.85	3.56	2.65	11.21	101.24
8	E3a_E4a	KnownJunction	1	437.69	109.45	13.21	4.20	2.88	8.60	132.01
9	I3	Intron	1	57.77	32.30	2.79	1.08	0.27	2.21	12.13
10	I3_SR1	SilentIntronRegion	1	62.75	34.01	3.35	0.39	0.42	1.34	13.49
11	E4_Aa	NovelBoundary	0	62.85	45.87	4.10	5.58	2.24	4.66	13.47
12	ER4a	ExonRegion	1	258.88	137.41	10.07	6.57	0.75	11.78	90.07
13	E4_Da	NovelBoundary	1	49.42	63.66	4.27	3.01	0.00	1.45	7.95
14	E4a_E5a	KnownJunction	1	259.31	119.04	6.39	2.76	2.01	7.24	61.87
15	I4_AR1	ActiveIntronRegion	1	52.17	36.27	2.48	1.65	0.77	1.76	8.72
16	ER5a	ExonRegion	1	505.44	173.19	14.50	2.98	3.46	11.76	100.61
17	E5a_E6a	KnownJunction	1	489.97	159.05	12.17	2.74	4.08	5.76	88.28
18	ER6a	ExonRegion	1	488.86	156.40	11.64	6.07	2.82	5.69	92.94
19	E6a_E7a	KnownJunction	1	474.75	139.48	14.53	5.88	0.97	8.60	98.76
20	I6_SR1	SilentIntronRegion	1	35.12	32.84	1.89	0.69	0.40	1.91	11.03
21	E7_Aa	NovelBoundary	1	45.38	50.13	2.07	1.25	0.00	2.36	5.22
22	ER7a	ExonRegion	1	548.50	134.53	18.52	3.76	1.15	10.50	119.43
23	E7_Da	NovelBoundary	1	40.77	63.50	1.11	0.00	0.00	3.19	5.10
24	E7a_E8a	KnownJunction	1	521.08	105.45	14.30	4.42	2.35	8.63	114.14
25	ER8a	ExonRegion	1	481.07	130.67	19.01	9.22	1.72	6.99	103.80
26	E8a_E9a	KnownJunction	1	341.58	147.17	22.69	7.80	4.79	8.92	125.34
27	ER9a	ExonRegion	1	451.57	187.96	19.50	12.66	3.16	8.92	143.56
28	E9a_E10a	KnownJunction	1	564.97	215.79	17.52	10.89	2.21	1.66	130.47
29	E10_Aa	NovelBoundary	1	5.51	32.16	25.08	20.83	0.00	1.61	18.42
30	ER10a	ExonRegion	1	680.72	229.52	60.64	24.97	3.39	7.07	190.56
31	E10a_E11a	KnownJunction	0	812.48	209.07	70.17	35.14	3.43	11.58	205.18
32	E11_Aa	NovelBoundary	1	65.09	34.10	18.38	10.89	0.00	0.00	12.31
33	ER11a	ExonRegion	1	665.95	209.32	68.26	39.08	4.42	5.02	176.97
34	E11a_E12a	KnownJunction	0	632.23	185.56	67.83	34.49	2.35	5.39	155.87
35	ER12a	ExonRegion	1	428.45	167.75	40.39	36.68	2.05	3.56	147.56
36	E12a_E13a	KnownJunction	1	377.29	150.51	41.52	28.58	3.53	2.65	161.66
37	E12a_E14a	NovelJunction	0	8.16	12.58	0.79	4.66	0.00	0.00	0.00
38	ER13a	ExonRegion	0	309.04	157.57	44.49	31.82	3.05	5.17	147.90
39	E13a_E14a	KnownJunction	0	264.45	163.64	34.65	37.71	2.05	8.63	149.43
40	ER14a	ExonRegion	0	311.14	207.08	52.59	42.16	2.43	11.73	188.54
41	E14_Da	NovelBoundary	1	5.29	11.74	4.94	13.76	0.00	0.00	6.75
42	E14a_E15a	KnownJunction	0	345.68	176.15	51.26	29.94	1.18	8.60	193.19
43	E14a_E16a	NovelJunction	1	23.15	28.79	4.68	9.78	0.00	0.00	8.70
44	ER15a	ExonRegion	0	274.02	177.17	44.93	36.65	1.93	10.05	177.79
45	E15a_E16a	KnownJunction	0	288.67	172.94	42.08	35.44	1.04	10.51	205.84
46	ER16a	ExonRegion	0	262.81	158.81	34.22	37.16	0.51	8.06	167.07
47	E16a_E17a	KnownJunction	0	198.09	118.41	25.39	25.93	2.19	3.40	102.20
48	ER17a	ExonRegion	0	229.97	113.93	27.99	26.53	1.46	4.62	118.79
49	E17a_E18a	KnownJunction	0	397.10	144.47	35.62	38.20	2.10	5.60	150.51
50	ER18a	ExonRegion	0	475.58	201.61	67.49	53.09	2.28	8.34	189.81
51	E18a_E19a	KnownJunction	0	507.09	247.24	82.86	60.28	4.15	9.46	214.36
52	ER19a	ExonRegion	0	531.60	236.60	79.24	47.51	3.61	9.75	230.44
53	E19_Da	NovelBoundary	1	38.50	14.63	9.86	11.57	0.92	0.00	6.35
54	E19a_E20a	KnownJunction	1	483.52	202.68	63.40	32.75	0.00	4.45	204.90
55	E20_Aa	NovelBoundary	0	7.24	9.48	6.19	12.16	0.00	1.66	4.13
56	ER20a	ExonRegion	0	429.45	197.55	67.54	34.14	1.06	11.01	210.72
57	E20a_E21a	KnownJunction	0	305.26	128.10	58.10	26.47	2.01	5.07	148.30
58	ER21a	ExonRegion	0	321.51	151.38	49.21	27.89	2.67	12.50	170.67
59	E21a_E22a	KnownJunction	1	310.67	138.82	41.95	23.92	1.87	1.66	146.57
60	ER22a	ExonRegion	0	264.00	145.69	38.19	25.70	1.58	4.68	141.18
61	E22a_E23a	KnownJunction	0	223.55	105.61	33.01	12.35	0.97	9.84	126.73
62	E22a_E24a	NovelJunction	0	35.70	32.18	3.64	5.53	0.00	1.13	12.73
63	ER23a	ExonRegion	0	262.97	130.94	34.89	17.74	2.08	5.70	154.27
64	E23a_E24a	KnownJunction	0	250.60	129.05	32.64	15.96	3.27	7.85	141.77
65	ER24a	ExonRegion	0	257.05	143.87	42.26	21.14	1.87	11.63	148.08
66	E24a_E25a	KnownJunction	0	270.89	145.73	40.11	35.16	0.00	7.24	130.16
67	ER25a	ExonRegion	0	374.57	129.70	45.04	24.08	1.92	8.36	127.80
68	E25a_E26a	KnownJunction	1	653.26	147.83	45.70	9.92	3.23	2.60	112.32
69	E25a_E27a	NovelJunction	0	40.89	9.54	3.82	7.69	0.00	0.00	12.60
70	E25a_E28a	NovelJunction	0	1.87	14.66	0.00	8.02	0.00	0.00	0.00
71	ER26a	ExonRegion	1	936.52	194.00	81.69	40.48	4.32	10.78	173.56
72	E26a_E27a	KnownJunction	1	1252.36	242.70	107.86	50.90	7.56	17.07	218.77
73	ER27a	ExonRegion	0	1196.14	219.77	123.97	53.10	4.83	20.51	244.85
74	E27a_E28a	KnownJunction	0	781.06	193.12	91.06	40.42	2.07	23.80	196.38
75	ER28a	ExonRegion	0	623.23	163.32	75.88	41.20	5.21	15.63	180.77
76	E28a_E29a	KnownJunction	0	553.35	128.55	64.11	34.05	4.54	8.74	193.73
77	ER29a	ExonRegion	0	448.02	201.08	73.74	35.10	3.50	14.62	193.25
78	E29a_E30a	KnownJunction	0	346.15	190.15	43.21	46.08	2.26	10.61	144.10
79	ER30a	ExonRegion	0	366.09	189.40	47.05	46.22	3.23	7.21	130.02
80	E30a_E31a	KnownJunction	0	473.49	200.11	59.49	37.11	3.23	10.99	165.89
81	ER31a	ExonRegion	0	360.03	175.08	54.92	26.35	3.53	8.98	178.46
82	E31_Da	NovelBoundary	0	158.12	43.64	26.56	26.36	2.93	3.11	21.22
83	E31a_E32a	KnownJunction	1	234.04	145.23	40.98	12.92	1.87	2.79	129.46
84	I31	Intron	0	143.19	30.77	18.22	12.86	0.62	2.59	18.03
85	I31_SR1	SilentIntronRegion	1	143.35	30.80	18.23	12.87	0.62	2.60	18.05
86	E32_Aa	NovelBoundary	1	105.60	40.98	21.01	10.24	1.08	2.41	24.41
87	ER32a	ExonRegion	0	400.46	192.22	63.12	40.02	1.43	18.02	187.92
88	E32_Da	NovelBoundary	0	84.92	13.45	15.68	9.51	0.00	0.00	23.96
89	E32a_E33a	KnownJunction	0	332.65	171.61	46.76	39.44	4.43	10.77	169.81
90	E33_Aa	NovelBoundary	1	112.96	28.29	15.72	27.17	1.18	1.26	24.85
91	ER33a	ExonRegion	0	362.06	187.44	49.54	43.74	2.81	9.53	167.93
92	E33a_E34a	KnownJunction	0	407.15	199.72	51.39	47.36	3.32	8.82	170.57
93	ER34a	ExonRegion	0	402.28	184.37	52.77	47.76	2.63	12.73	188.58
94	E34a_E35a	KnownJunction	0	230.65	138.27	23.35	37.44	2.21	5.76	103.00
95	I34	Intron	0	54.99	22.19	7.76	9.71	1.53	0.95	17.05
96	I34_SR1	SilentIntronRegion	0	55.08	22.22	7.77	9.72	1.54	0.95	17.08
97	E35_Aa	NovelBoundary	1	19.31	25.98	4.14	25.84	1.18	0.00	13.31
98	ER35a	ExonRegion	0	266.44	177.16	37.01	59.09	1.34	8.81	163.25
99	E35a_E36a	KnownJunction	0	285.18	142.23	32.51	44.00	2.17	8.60	109.96
100	E36_Aa	NovelBoundary	0	25.92	19.91	3.42	11.54	2.07	3.00	12.30
101	ER36a	ExonRegion	0	447.05	140.86	59.70	53.33	3.81	11.99	153.27
102	IG29_AR4	ActiveIntergenicRegion	0	6.15	8.66	0.93	2.49	0.00	1.23	2.70
103	IG29_AR3	ActiveIntergenicRegion	0	5.96	11.69	0.08	2.49	0.00	1.23	2.70
104	IG29_AR2	ActiveIntergenicRegion	0	3.98	10.51	0.00	2.30	0.76	1.23	2.39