Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ADCY3	Gene	0	23.57	38.15	104.92	71.81	62.29	54.43	89.36
2	260600	Transcript	0	25.07	59.73	119.83	99.30	72.84	57.74	120.05
3	405392	Transcript	0	2.92	0.85	7.72	3.26	7.17	1.72	6.00
4	IG42_AR3	ActiveIntergenicRegion	0	1.36	12.89	5.67	20.68	3.68	15.30	5.40
5	ER1a	ExonRegion	0	21.05	45.39	93.35	82.80	43.28	54.09	80.44
6	E1a_E2a	KnownJunction	0	22.78	45.90	90.71	73.80	64.66	32.29	105.21
7	ER2a	ExonRegion	0	27.28	61.04	99.95	91.52	75.44	52.02	113.21
8	E2a_E3a	KnownJunction	0	33.63	75.82	127.29	93.22	97.10	53.60	148.24
9	ER3a	ExonRegion	0	36.03	81.26	163.96	133.04	82.74	69.98	149.15
10	E3a_E4a	KnownJunction	0	30.03	80.78	164.53	142.01	109.13	71.56	134.56
11	E4_Ab	NovelBoundary	0	25.03	84.70	122.46	137.92	83.84	68.29	105.32
12	ER4a	ExonRegion	0	26.10	81.28	145.11	139.54	92.83	72.68	125.35
13	ER4b	ExonRegion	0	27.25	69.02	133.18	105.27	78.36	59.57	109.19
14	E4a_E5a	KnownJunction	0	21.76	53.49	132.80	86.26	75.54	41.83	95.15
15	ER5a	ExonRegion	0	15.10	49.62	85.55	79.94	52.70	48.71	64.92
16	E5a_E6a	KnownJunction	0	14.65	55.33	64.74	82.52	51.29	66.81	61.73
17	ER6a	ExonRegion	0	23.13	41.66	86.65	75.66	56.16	52.70	80.26
18	E6a_E7a	KnownJunction	0	2.99	1.18	5.03	1.44	4.24	0.00	4.83
19	E6a_E8a	KnownJunction	0	15.04	39.54	69.93	73.93	37.09	50.71	69.94
20	ER7a	ExonRegion	0	2.28	1.14	7.16	2.95	4.52	0.76	3.76
21	E7a_E8a	KnownJunction	0	3.59	0.00	7.92	2.71	7.19	1.66	3.67
22	ER8a	ExonRegion	0	27.24	46.44	122.32	95.45	67.85	81.98	121.51
23	E8a_E9a	KnownJunction	0	29.16	57.56	121.16	100.13	46.24	94.28	114.84
24	ER9a	ExonRegion	0	30.73	46.76	134.54	89.82	68.87	72.87	120.37
25	E9a_E10a	KnownJunction	0	36.75	51.12	165.85	88.53	117.82	75.01	148.92
26	ER10a	ExonRegion	0	28.45	42.03	126.52	76.29	71.09	60.10	110.54
27	E10a_E11a	KnownJunction	0	38.22	44.48	161.32	84.98	60.38	74.91	120.56
28	ER11a	ExonRegion	0	24.42	42.27	132.45	83.83	68.16	67.38	112.94
29	E11a_E12a	KnownJunction	0	33.25	30.95	143.33	85.96	83.38	72.47	114.41
30	E11a_E13a	NovelJunction	0	0.00	7.04	3.29	8.80	1.06	12.09	1.48
31	ER12a	ExonRegion	0	29.44	30.36	171.39	96.04	97.13	78.70	137.10
32	E12a_E13a	KnownJunction	0	33.95	29.77	165.96	72.47	69.14	61.93	115.21
33	E13_Aa	NovelBoundary	0	5.71	1.37	10.71	3.14	26.10	9.84	6.15
34	ER13a	ExonRegion	0	25.84	46.28	139.16	83.09	107.52	67.14	141.93
35	E13_Da	NovelBoundary	0	3.77	5.36	6.85	8.26	34.79	6.54	13.96
36	E13a_E14a	KnownJunction	1	14.32	45.76	117.64	78.18	56.09	56.33	138.67
37	E13a_E14b	KnownJunction	0	2.80	1.08	10.75	5.93	12.75	4.48	11.74
38	E13a_E17a	NovelJunction	1	0.68	0.00	4.84	2.79	1.13	8.23	0.00
39	I13	Intron	0	3.49	2.29	6.16	2.45	16.67	2.32	7.34
40	I13_AR1	ActiveIntronRegion	0	4.56	5.32	5.67	2.74	27.07	5.00	8.68
41	I13_AR2	ActiveIntronRegion	0	1.71	0.55	5.88	2.78	16.72	2.76	9.07
42	ER14a	ExonRegion	0	24.44	40.50	125.80	84.93	70.06	64.18	135.69
43	E14_Ab	KnownBoundary	1	20.71	44.56	117.55	92.57	96.61	49.71	156.43
44	ER14b	ExonRegion	0	29.52	48.44	139.78	99.04	110.13	63.55	141.72
45	E14a_E15a	KnownJunction	0	24.32	43.32	126.52	83.55	94.98	48.75	117.65
46	I14	Intron	0	1.53	2.84	5.88	4.53	16.28	1.59	8.56
47	I14_SR1	SilentIntronRegion	0	1.54	2.86	5.91	4.56	16.38	1.60	8.61
48	ER15a	ExonRegion	0	28.48	48.83	150.84	85.55	106.93	46.90	120.75
49	E15a_E16a	KnownJunction	0	24.67	53.70	134.22	72.50	88.38	42.61	106.38
50	I15	Intron	0	2.17	0.40	3.65	1.55	15.18	1.39	4.87
51	I15_SR1	SilentIntronRegion	0	1.65	0.64	3.46	0.70	13.70	1.71	4.68
52	I15_AR1	ActiveIntronRegion	0	2.54	0.22	3.80	2.15	16.26	1.17	5.02
53	ER16a	ExonRegion	0	29.15	47.99	161.03	79.74	127.38	71.72	145.67
54	E16a_E17a	KnownJunction	0	37.27	43.09	185.02	63.61	81.86	79.03	150.87
55	ER17a	ExonRegion	0	49.79	50.12	211.40	101.64	144.97	90.11	162.59
56	E17a_E18a	KnownJunction	1	52.86	44.32	274.60	119.12	133.38	124.11	179.01
57	ER18a	ExonRegion	0	69.13	54.72	254.02	116.68	178.55	109.34	183.02
58	E18_Da	NovelBoundary	0	10.33	1.26	7.76	3.06	25.20	0.00	8.68
59	E18a_E19a	KnownJunction	0	82.40	55.88	255.71	91.92	117.06	99.91	132.78
60	I18	Intron	0	2.72	1.97	6.02	2.75	14.03	1.25	5.73
61	I18_AR1	ActiveIntronRegion	0	2.90	2.38	5.21	2.35	12.67	1.21	5.31
62	I18_SR1	SilentIntronRegion	0	1.91	0.00	10.15	4.81	21.08	1.45	7.92
63	E19_Aa	NovelBoundary	0	3.29	2.81	8.91	3.03	27.66	3.06	6.46
64	ER19a	ExonRegion	0	47.54	55.45	192.10	104.23	120.38	79.21	121.45
65	E19_Da	NovelBoundary	0	3.42	0.00	6.19	1.03	24.85	4.64	6.09
66	E19a_E20a	KnownJunction	0	35.53	43.53	119.66	86.61	78.68	80.32	94.92
67	I19	Intron	0	0.87	1.38	1.79	0.70	17.53	2.09	2.68
68	I19_AR1	ActiveIntronRegion	0	0.88	1.40	1.82	0.71	17.78	2.12	2.71
69	E20_Aa	NovelBoundary	0	6.53	3.02	3.74	2.55	80.29	3.00	9.19
70	ER20a	ExonRegion	0	41.11	36.27	137.73	75.92	73.30	60.97	92.32
71	E20_Da	NovelBoundary	0	6.23	1.63	9.27	2.22	98.25	5.47	14.85
72	E20a_E21a	KnownJunction	0	33.00	36.52	136.20	69.38	60.51	86.11	97.04
73	E21_Aa	NovelBoundary	1	22.26	4.97	15.84	2.95	137.79	3.22	38.90
74	ER21a	ExonRegion	0	13.90	19.96	72.07	41.43	36.30	46.68	63.55
75	E21_Da	NovelBoundary	0	22.98	18.23	61.58	21.48	197.63	21.47	37.29
76	E21a_E22a	KnownJunction	1	15.72	20.86	76.32	38.44	67.27	59.79	79.78
77	E22_Aa	NovelBoundary	0	5.11	4.49	14.15	8.21	35.87	3.06	4.83
78	ER22a	ExonRegion	1	5.20	6.46	23.49	14.88	12.43	20.92	16.37