Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	IFT172	Gene	0	17.58	6.69	11.10	6.87	27.55	7.09	9.12
2	359466	Transcript	0	8.73	5.41	6.71	3.85	20.14	2.19	2.10
3	260570	Transcript	0	18.50	6.27	10.85	6.36	27.86	7.45	10.55
4	ER1a	ExonRegion	0	4.03	6.54	5.46	3.15	13.47	1.02	2.26
5	E1_Ab	KnownBoundary	0	12.55	4.36	11.50	4.63	34.56	3.14	8.44
6	ER1b	ExonRegion	0	10.40	1.95	7.34	6.25	19.86	3.69	6.50
7	E1a_E2a	KnownJunction	0	5.54	5.49	5.63	4.09	5.49	2.47	3.34
8	ER2a	ExonRegion	0	19.45	6.81	15.68	7.56	33.29	9.70	7.25
9	E2a_E3a	KnownJunction	0	18.21	2.89	13.69	13.46	41.45	6.16	7.32
10	ER3a	ExonRegion	1	20.14	5.33	17.59	6.84	23.50	8.01	4.93
11	E3a_E4a	KnownJunction	1	20.78	2.44	9.54	1.46	18.97	0.00	3.94
12	ER4a	ExonRegion	1	19.77	6.04	16.46	4.55	27.76	4.93	5.14
13	E4a_E5a	KnownJunction	1	13.34	7.09	15.06	7.48	33.63	10.34	4.07
14	ER5a	ExonRegion	1	19.70	4.68	21.13	6.84	30.42	7.04	6.04
15	E5a_E6a	KnownJunction	1	19.76	3.55	20.43	5.96	14.13	5.63	5.06
16	ER6a	ExonRegion	0	13.22	4.24	14.34	7.33	21.60	8.60	6.23
17	E6a_E7a	KnownJunction	0	11.28	4.05	11.93	6.31	13.72	12.09	6.68
18	ER7a	ExonRegion	0	10.97	3.09	9.78	7.27	20.49	5.13	10.25
19	E7a_E8a	KnownJunction	0	11.63	2.42	8.18	4.39	19.69	1.37	8.20
20	ER8a	ExonRegion	0	9.59	6.81	8.35	5.92	18.23	7.94	6.07
21	E8a_E9a	KnownJunction	0	7.28	4.33	3.85	9.86	16.53	1.66	4.53
22	ER9a	ExonRegion	0	9.74	2.32	9.22	12.54	24.17	7.19	6.94
23	E9a_E10a	KnownJunction	0	15.62	1.47	14.33	7.15	23.10	1.45	8.79
24	ER10a	ExonRegion	0	15.72	3.80	11.17	12.59	28.02	10.70	7.72
25	E10a_E11a	KnownJunction	0	16.37	4.70	8.79	8.32	24.14	11.79	9.34
26	ER11a	ExonRegion	0	29.16	4.47	19.01	9.49	35.20	8.35	13.29
27	E11a_E12a	KnownJunction	0	20.21	9.33	9.96	4.25	32.14	6.75	11.01
28	ER12a	ExonRegion	0	21.93	7.85	17.12	6.14	33.76	1.95	10.43
29	E12a_E13a	KnownJunction	1	19.64	4.18	21.12	10.13	45.39	0.00	7.32
30	ER13a	ExonRegion	0	29.41	9.78	18.62	10.13	42.99	5.12	13.30
31	E13a_E14a	KnownJunction	0	15.62	4.99	11.75	4.85	33.86	3.48	12.31
32	ER14a	ExonRegion	0	17.09	5.24	13.58	6.10	34.83	5.52	9.86
33	E14a_E15a	KnownJunction	0	18.06	5.23	14.08	7.31	34.33	3.11	9.60
34	ER15a	ExonRegion	0	15.16	7.28	12.19	5.46	30.13	5.95	12.97
35	E15_Da	KnownBoundary	0	6.03	3.78	0.60	2.68	15.08	7.13	1.63
36	E15a_E16a	KnownJunction	0	10.06	4.20	12.04	2.93	20.19	1.66	9.69
37	ER15b	ExonRegion	1	13.44	4.27	7.96	4.54	26.82	3.36	1.94
38	E15_Db	NovelBoundary	0	8.91	4.02	2.24	5.01	13.37	5.25	2.44
39	I15	Intron	0	3.32	2.34	3.41	3.69	8.09	4.24	1.21
40	I15_AR1	ActiveIntronRegion	0	3.33	2.35	3.42	3.70	8.11	4.25	1.21
41	ER16a	ExonRegion	0	14.31	7.72	10.98	6.30	29.67	7.44	10.20
42	E16_Da	NovelBoundary	0	2.50	2.05	4.33	1.68	2.01	9.43	3.73
43	E16a_E17a	KnownJunction	0	9.23	2.21	11.73	4.42	27.36	3.97	9.93
44	I16_AR1	ActiveIntronRegion	0	1.72	5.84	2.17	3.42	8.14	3.70	1.30
45	ER17a	ExonRegion	0	9.96	7.01	8.56	6.64	22.75	2.87	7.83
46	E17a_E18a	KnownJunction	0	12.28	1.42	8.87	1.19	15.49	3.03	4.84
47	ER18a	ExonRegion	0	20.28	7.93	15.22	6.22	23.71	1.83	11.14
48	E18a_E19a	KnownJunction	0	11.42	0.00	8.36	4.77	27.20	1.66	6.94
49	E19_Aa	NovelBoundary	1	16.14	1.23	6.14	0.00	7.77	4.42	0.00
50	ER19a	ExonRegion	0	16.88	3.02	11.83	6.79	35.08	4.15	8.34
51	E19a_E20a	KnownJunction	0	19.43	4.81	16.78	7.10	25.20	6.67	8.53
52	ER20a	ExonRegion	0	18.23	2.40	10.52	7.55	25.34	8.73	13.22
53	E20a_E21a	KnownJunction	0	16.34	1.13	10.56	10.59	27.80	10.05	11.69
54	ER21a	ExonRegion	0	11.67	3.52	9.60	8.58	25.58	9.35	9.68
55	E21a_E22a	KnownJunction	0	12.43	3.34	6.77	5.74	13.07	1.21	5.00
56	ER22a	ExonRegion	0	7.83	7.17	7.33	5.04	21.01	3.46	8.28
57	E22a_E23a	KnownJunction	0	10.61	3.63	10.82	2.52	18.88	3.24	7.84
58	ER23a	ExonRegion	0	11.30	3.23	10.00	2.68	22.67	2.17	5.44
59	E23a_E24a	KnownJunction	0	9.93	1.34	9.27	4.80	20.61	2.57	5.83
60	ER24a	ExonRegion	0	8.80	4.13	8.50	3.57	20.20	5.93	7.00
61	E24a_E25a	KnownJunction	0	11.92	1.23	9.66	2.95	18.74	3.91	5.93
62	ER25a	ExonRegion	0	11.57	6.74	10.13	7.52	22.97	5.06	10.10
63	E25a_E26a	KnownJunction	0	11.07	1.63	9.92	11.38	34.21	2.79	8.33
64	E26_Aa	NovelBoundary	0	4.64	2.57	4.97	1.16	0.88	8.25	0.00
65	ER26a	ExonRegion	0	19.77	2.43	11.42	6.90	34.94	5.78	11.96
66	E26a_E27a	KnownJunction	0	34.25	3.39	13.13	8.72	40.11	8.23	15.55
67	ER27a	ExonRegion	0	20.80	4.75	14.54	9.94	30.30	7.74	15.09
68	E27a_E28a	KnownJunction	0	10.23	4.44	13.62	5.58	19.59	8.52	14.95
69	E28_Aa	NovelBoundary	0	2.02	3.07	2.93	9.08	13.02	5.09	1.53
70	ER28a	ExonRegion	0	25.87	4.45	14.07	9.51	35.96	7.85	13.74
71	E28a_E29a	KnownJunction	0	16.76	5.25	13.71	8.83	29.35	8.07	13.93
72	ER29a	ExonRegion	0	17.71	5.14	12.03	3.62	26.68	7.02	10.60
73	E29a_E30a	KnownJunction	0	11.30	1.00	11.86	2.82	29.48	10.80	8.51
74	ER30a	ExonRegion	0	18.51	4.56	11.45	4.44	26.72	6.95	8.94
75	E30a_E31a	KnownJunction	0	18.19	4.28	14.67	5.28	23.03	2.92	9.85
76	ER31a	ExonRegion	0	18.16	6.42	16.39	5.76	26.00	4.90	8.65
77	E31a_E32a	KnownJunction	0	18.91	5.28	13.32	8.72	22.43	4.31	8.20
78	ER32a	ExonRegion	0	13.65	2.41	9.80	8.29	25.30	2.38	8.71
79	E32_Da	NovelBoundary	0	6.54	4.36	2.54	9.13	10.28	4.66	1.29
80	E32a_E33a	KnownJunction	0	7.88	1.29	6.41	2.52	23.54	0.00	7.67
81	ER33a	ExonRegion	0	9.40	3.52	5.71	4.21	13.80	2.89	5.20
82	E33a_E34a	KnownJunction	0	9.00	4.20	4.14	3.96	15.77	3.16	2.84
83	ER34a	ExonRegion	0	8.17	3.43	6.55	3.15	17.46	5.26	6.54
84	E34a_E35a	KnownJunction	0	9.35	1.23	3.69	1.44	12.56	5.28	3.84
85	ER35a	ExonRegion	0	11.15	4.08	7.36	4.00	21.85	8.21	7.73
86	E35a_E36a	KnownJunction	0	12.55	0.00	5.98	4.71	29.60	14.28	11.72
87	E36_Aa	NovelBoundary	0	3.19	2.81	2.46	8.59	3.18	8.28	0.00
88	ER36a	ExonRegion	0	15.62	6.86	7.73	6.56	25.22	14.23	9.68
89	E36_Da	NovelBoundary	0	3.47	4.68	1.44	10.27	3.09	0.00	1.39
90	E36a_E37a	KnownJunction	0	14.35	5.78	7.24	3.63	20.98	8.15	11.24
91	I36_AR1	ActiveIntronRegion	0	3.07	1.21	2.03	3.53	9.72	0.00	0.67
92	ER37a	ExonRegion	0	18.22	6.99	11.56	14.66	39.78	15.92	12.79
93	E37a_E38a	KnownJunction	0	24.47	8.25	12.79	13.30	45.00	26.26	10.76
94	E38_Aa	NovelBoundary	0	2.85	8.75	2.28	2.79	8.81	8.36	1.43
95	ER38a	ExonRegion	0	17.21	5.56	10.68	14.07	39.11	19.08	13.04
96	E38_Da	NovelBoundary	0	2.39	8.98	5.82	1.68	2.07	1.58	0.86
97	E38a_E39a	KnownJunction	0	12.32	2.86	11.90	11.49	20.72	8.76	13.31
98	E39_Aa	NovelBoundary	0	0.63	8.43	3.41	7.67	3.20	0.99	0.00
99	ER39a	ExonRegion	0	17.48	5.42	12.19	10.52	29.00	9.05	12.51
100	E39_Da	NovelBoundary	0	2.45	3.84	3.06	1.60	6.57	10.99	2.19
101	E39a_E40a	KnownJunction	0	21.83	5.04	10.96	4.33	36.95	6.73	12.90
102	ER40a	ExonRegion	0	19.85	4.91	14.44	4.54	44.96	10.99	12.10
103	E40_Da	NovelBoundary	0	0.62	1.21	1.51	9.67	3.11	3.32	0.66
104	E40a_E41a	KnownJunction	0	14.70	4.12	13.67	2.76	39.70	3.81	13.87
105	ER41a	ExonRegion	0	17.82	4.60	14.23	13.76	46.04	6.91	13.93
106	E41a_E42a	KnownJunction	0	14.65	1.63	11.51	5.91	42.33	12.94	10.46
107	ER42a	ExonRegion	0	21.41	4.35	14.10	18.04	40.35	9.17	16.75
108	E42a_E43a	KnownJunction	0	22.33	3.18	14.79	13.76	50.99	1.58	14.63
109	ER43a	ExonRegion	0	18.87	6.14	15.45	10.53	46.84	6.65	18.96
110	E43_Da	NovelBoundary	0	1.55	7.62	1.19	4.52	6.45	2.71	0.89
111	E43a_E44a	KnownJunction	0	13.70	5.73	13.52	5.28	38.50	13.00	20.58
112	I43	Intron	1	20.33	4.42	2.97	6.84	4.47	0.56	3.07
113	I43_AR1	ActiveIntronRegion	1	20.56	4.47	3.01	6.92	4.52	0.57	3.11
114	E44_Aa	NovelBoundary	1	411.79	45.98	7.76	5.45	11.32	6.14	12.02
115	ER44a	ExonRegion	0	30.90	2.98	15.82	4.36	36.23	8.95	17.65
116	E44a_E45a	KnownJunction	0	24.27	2.68	14.07	2.17	21.90	7.88	10.12
117	E44a_E46a	NovelJunction	1	41.22	36.41	0.79	3.98	0.00	7.32	6.68
118	ER45a	ExonRegion	0	28.91	7.03	13.77	7.09	39.36	14.44	16.85
119	E45a_E46a	KnownJunction	0	19.93	3.99	7.29	4.71	34.46	10.37	13.90
120	I45_SR2	SilentIntronRegion	0	4.85	1.72	3.12	1.18	8.39	7.93	1.46
121	ER46a	ExonRegion	1	36.58	35.05	7.95	5.17	27.12	19.17	11.09
122	E46a_E47a	KnownJunction	1	62.79	50.63	13.58	4.36	24.48	13.45	17.33
123	ER47a	ExonRegion	1	69.77	42.18	10.39	2.94	19.57	14.65	12.01
124	E47a_E48a	KnownJunction	1	55.54	25.88	4.31	1.49	17.40	6.62	4.26
125	ER48a	ExonRegion	1	30.64	12.64	4.58	2.81	9.27	6.30	5.40