Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	IAH1	Gene	0	47.60	80.87	65.03	61.86	59.33	91.24	212.55
2	399109	Transcript	0	2.31	1.09	1.19	2.01	0.04	0.00	1.70
3	351760	Transcript	0	19.72	43.81	13.59	29.58	27.81	40.97	89.67
4	IG41	Intergenic	0	4.43	5.80	10.59	14.67	1.74	11.89	2.69
5	IG41_AR1	ActiveIntergenicRegion	0	7.67	8.78	21.75	15.89	1.14	19.89	5.13
6	IG41_SR1	SilentIntergenicRegion	0	5.06	5.96	10.79	18.10	3.40	15.32	2.73
7	IG41_AR2	ActiveIntergenicRegion	0	2.64	4.46	5.26	13.64	1.34	6.01	1.51
8	ER1a	ExonRegion	0	4.61	0.99	2.38	4.02	0.09	0.00	2.72
9	ER1b	ExonRegion	1	34.75	22.95	14.28	22.42	17.76	27.45	78.25
10	E1a_E2a	KnownJunction	1	16.62	17.73	7.23	15.55	16.07	28.81	70.11
11	E1a_E3b	KnownJunction	0	0.00	1.18	0.00	0.00	0.00	0.00	0.67
12	I1	Intron	1	5.84	6.23	11.96	21.08	0.52	19.67	3.89
13	I1_SR2	SilentIntronRegion	1	1.98	2.30	2.41	14.35	0.43	6.99	3.32
14	I1_AR2	ActiveIntronRegion	1	5.83	4.90	12.50	29.62	1.21	26.01	6.96
15	I1_SR3	SilentIntronRegion	1	9.47	13.43	23.34	42.71	0.84	41.20	6.66
16	I1_AR3	ActiveIntronRegion	1	2.97	4.12	8.26	12.79	0.35	7.36	1.33
17	I1_AR4	ActiveIntronRegion	1	11.51	7.59	19.15	18.33	0.40	19.79	3.46
18	E2_Aa	NovelBoundary	1	21.31	17.10	42.90	37.98	3.16	70.70	5.50
19	ER2a	ExonRegion	1	11.02	35.62	5.98	22.89	20.38	34.24	62.08
20	E2_Da	NovelBoundary	1	11.85	16.89	34.79	44.97	0.95	36.45	5.89
21	E2a_E3a	KnownJunction	1	9.61	58.01	4.12	30.10	31.51	41.78	74.19
22	I2	Intron	1	7.12	9.24	21.12	19.68	0.56	20.44	4.37
23	I2_SR1	SilentIntronRegion	1	6.53	11.33	21.94	23.14	0.64	25.11	4.16
24	I2_AR1	ActiveIntronRegion	1	8.34	12.84	28.16	32.60	0.81	29.25	6.26
25	I2_SR2	SilentIntronRegion	1	8.93	13.36	28.79	36.01	0.81	30.19	5.14
26	I2_AR2	ActiveIntronRegion	0	8.17	7.84	17.94	14.09	0.52	14.13	3.93
27	I2_SR3	SilentIntronRegion	1	6.23	6.21	26.17	22.22	0.41	21.57	5.99
28	E3_Aa	NovelBoundary	1	13.47	8.70	24.43	18.75	0.00	9.43	2.36
29	ER3a	ExonRegion	0	41.64	63.87	37.03	49.77	43.27	59.07	152.29
30	E3_Ab	KnownBoundary	0	69.73	69.36	63.27	67.32	52.49	77.80	209.81
31	ER3b	ExonRegion	0	78.02	96.13	74.71	62.91	77.54	106.77	322.80
32	E3_Da	NovelBoundary	1	43.69	19.81	81.18	45.40	0.00	45.43	11.64
33	E3a_E4a	KnownJunction	1	28.64	86.85	18.83	49.60	108.69	77.69	251.37
34	I3	Intron	1	19.72	13.97	45.80	34.48	1.21	45.27	5.18
35	I3_SR1	SilentIntronRegion	1	21.73	17.89	46.64	35.84	0.78	40.68	5.46
36	I3_AR1	ActiveIntronRegion	1	29.52	15.44	66.04	43.26	1.83	66.86	7.86
37	I3_SR2	SilentIntronRegion	1	7.62	4.72	16.91	12.59	0.90	12.91	0.35
38	I3_AR3	ActiveIntronRegion	1	10.31	15.85	35.20	38.87	0.87	43.04	4.66
39	E4_Aa	NovelBoundary	1	10.56	25.98	36.99	45.13	1.18	70.78	1.78
40	ER4a	ExonRegion	0	61.22	155.18	58.66	81.68	112.47	147.25	395.47
41	E4_Da	NovelBoundary	1	26.60	11.06	43.77	33.65	0.00	63.57	2.15
42	E4a_E5a	KnownJunction	1	59.95	124.97	34.33	53.02	115.03	129.42	337.40
43	I4	Intron	1	17.73	12.65	42.96	39.37	0.44	31.57	3.72
44	I4_AR1	ActiveIntronRegion	1	30.09	17.77	55.45	47.62	0.38	42.03	3.55
45	I4_SR1	SilentIntronRegion	1	17.23	12.30	42.91	39.20	0.46	31.74	3.77
46	I4_AR2	ActiveIntronRegion	1	8.71	11.00	27.58	31.47	0.25	15.47	3.40
47	E5_Aa	NovelBoundary	1	14.24	8.72	42.08	35.68	0.00	32.78	0.00
48	ER5a	ExonRegion	0	52.67	126.94	58.17	73.02	96.52	119.78	358.06
49	E5_Da	NovelBoundary	1	9.50	15.13	42.67	42.89	0.00	27.44	5.63
50	E5a_E6a	KnownJunction	1	43.79	90.14	25.79	53.23	87.79	97.15	287.49
51	I5	Intron	1	19.38	14.34	58.39	36.12	1.00	25.61	5.74
52	I5_AR1	ActiveIntronRegion	1	22.24	15.76	67.43	42.17	0.84	30.22	6.23
53	I5_SR1	SilentIntronRegion	0	8.05	5.30	16.56	8.07	0.40	1.79	1.97
54	I5_AR2	ActiveIntronRegion	1	19.84	13.05	59.03	30.85	1.96	21.42	5.31
55	I5_SR2	SilentIntronRegion	1	10.43	12.79	33.12	25.28	0.94	18.41	5.42
56	E6_Aa	NovelBoundary	1	13.24	19.97	47.21	22.86	2.12	37.20	2.81
57	ER6a	ExonRegion	0	43.49	61.40	87.74	67.60	43.71	86.39	143.73
58	IG42	Intergenic	0	226.05	248.45	472.57	258.94	82.48	408.41	108.12
59	IG42_AR1	ActiveIntergenicRegion	0	226.41	248.85	473.33	259.34	82.61	409.04	108.29