Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CPSF3	Gene	0	95.60	34.97	134.36	42.01	684.65	37.06	126.40
2	238112	Transcript	0	93.89	33.95	131.18	40.99	655.18	34.60	123.24
3	ER1a	ExonRegion	0	34.09	12.96	46.94	15.49	189.26	11.49	51.22
4	E1a_E2a	KnownJunction	0	36.70	28.24	52.08	30.10	87.46	18.84	78.08
5	ER2a	ExonRegion	0	94.96	36.01	120.48	38.32	197.03	24.92	113.69
6	E2_Da	NovelBoundary	0	5.49	9.75	3.72	1.22	0.00	8.20	0.00
7	E2a_E3a	KnownJunction	0	110.17	41.43	145.86	37.90	460.11	23.53	118.58
8	ER3a	ExonRegion	0	65.56	36.72	113.81	34.89	502.18	28.90	90.81
9	E3a_E4a	KnownJunction	0	48.48	28.22	100.74	27.80	322.86	31.84	78.01
10	ER4a	ExonRegion	0	76.95	47.13	138.06	43.62	489.70	41.42	117.21
11	E4a_E5a	KnownJunction	0	83.75	50.91	149.62	54.97	553.66	37.65	125.49
12	E5_Aa	NovelBoundary	1	36.53	1.52	59.55	3.33	6.13	4.56	3.77
13	ER5a	ExonRegion	0	103.67	53.86	156.25	57.72	664.96	44.54	133.09
14	E5a_E6a	KnownJunction	0	87.57	36.83	134.72	56.19	539.53	36.93	133.80
15	I5_AR3	ActiveIntronRegion	1	6.41	6.03	4.70	3.57	2.38	14.79	0.67
16	ER6a	ExonRegion	0	93.39	56.45	140.96	58.72	703.72	37.31	136.01
17	E6a_E7a	KnownJunction	0	118.23	59.37	150.95	52.01	943.83	35.43	129.31
18	ER7a	ExonRegion	0	108.00	53.04	170.96	54.00	919.54	34.98	153.40
19	E7a_E8a	KnownJunction	0	102.89	42.95	162.51	54.94	853.92	33.90	158.35
20	E8_Aa	NovelBoundary	1	40.99	0.00	58.69	2.87	0.99	1.63	3.40
21	ER8a	ExonRegion	0	98.04	39.29	163.07	49.87	943.98	42.15	183.84
22	E8a_E9a	KnownJunction	0	77.19	26.27	142.61	37.85	949.06	30.04	177.92
23	E9_Aa	NovelBoundary	0	9.63	6.67	6.16	7.21	4.61	10.16	8.46
24	ER9a	ExonRegion	0	137.85	38.33	191.04	47.16	1172.19	42.97	194.20
25	E9a_E10a	KnownJunction	0	140.50	40.41	179.54	49.50	1147.69	37.41	176.79
26	E10_Aa	NovelBoundary	1	5.91	1.63	3.32	1.27	0.88	20.56	3.47
27	ER10a	ExonRegion	0	184.54	38.21	223.20	46.52	1148.89	45.63	194.56
28	E10a_E11a	KnownJunction	0	170.49	30.13	198.24	39.50	927.55	45.75	139.89
29	ER11a	ExonRegion	0	111.79	30.54	149.99	39.80	845.74	43.13	129.44
30	E11_Da	NovelBoundary	0	0.00	3.26	5.79	1.22	0.00	11.42	0.00
31	E11a_E12a	KnownJunction	0	82.06	33.57	123.37	29.88	519.86	32.83	101.58
32	I11	Intron	0	4.44	2.51	4.05	6.16	0.51	8.90	1.34
33	I11_SR2	SilentIntronRegion	0	4.46	2.53	4.07	6.20	0.51	8.95	1.35
34	ER12a	ExonRegion	0	87.64	26.96	121.13	29.08	639.40	35.30	110.06
35	E12a_E13a	KnownJunction	1	100.89	26.61	118.30	13.57	857.27	27.47	109.86
36	I12	Intron	0	7.92	3.89	4.90	8.46	0.71	12.82	1.63
37	I12_SR1	SilentIntronRegion	1	7.98	3.91	4.94	8.52	0.71	12.92	1.65
38	E13_Aa	NovelBoundary	1	12.88	10.38	7.65	19.53	1.01	28.30	2.04
39	ER13a	ExonRegion	0	113.13	28.76	132.88	35.02	745.76	44.50	112.04
40	E13_Da	NovelBoundary	1	7.58	1.55	3.49	5.85	0.00	18.41	1.56
41	E13a_E14a	KnownJunction	1	131.42	20.86	161.84	48.01	545.59	46.90	102.58
42	I13	Intron	1	6.34	4.16	9.12	14.41	0.22	18.35	2.13
43	I13_SR1	SilentIntronRegion	1	4.62	3.52	8.10	11.52	0.13	18.11	1.74
44	I13_AR2	ActiveIntronRegion	1	11.27	8.71	4.52	26.81	0.81	26.56	4.05
45	I13_SR2	SilentIntronRegion	1	11.59	6.76	12.27	26.89	0.65	20.03	2.64
46	I13_AR3	ActiveIntronRegion	1	10.09	5.19	11.79	18.66	0.31	18.62	3.38
47	E14_Aa	NovelBoundary	1	13.94	3.15	12.89	10.38	0.00	44.94	1.78
48	ER14a	ExonRegion	1	150.18	27.90	163.88	57.40	846.14	62.49	126.26
49	E14_Da	NovelBoundary	1	11.70	4.65	7.31	14.41	1.18	34.60	2.25
50	E14a_E15a	KnownJunction	0	104.46	25.64	141.09	42.13	1120.00	29.02	131.72
51	I14	Intron	1	5.83	4.59	5.99	9.14	0.19	21.36	1.43
52	I14_SR1	SilentIntronRegion	1	5.85	4.74	6.01	9.31	0.19	21.87	1.46
53	E15_Aa	NovelBoundary	1	2.85	1.55	1.55	24.19	0.00	16.56	2.77
54	ER15a	ExonRegion	0	102.65	25.00	139.56	36.28	747.38	29.91	126.79
55	E15_Da	NovelBoundary	1	3.42	1.29	3.56	13.79	1.13	21.60	0.00
56	E15a_E16a	KnownJunction	0	81.90	17.10	108.08	35.38	499.58	27.98	100.56
57	I15	Intron	1	7.24	4.65	10.05	15.62	1.77	23.83	2.09
58	I15_SR2	SilentIntronRegion	1	4.88	0.62	4.11	5.12	1.40	10.97	1.16
59	I15_AR2	ActiveIntronRegion	1	9.04	6.65	10.41	17.71	2.28	32.16	2.51
60	I15_SR3	SilentIntronRegion	1	7.71	5.38	11.18	17.71	1.81	26.26	2.14
61	I15_SR4	SilentIntronRegion	1	4.77	1.46	7.29	8.41	1.67	11.62	2.75
62	E16_Aa	NovelBoundary	1	9.11	2.57	9.56	8.05	1.18	17.90	0.89
63	ER16a	ExonRegion	0	69.30	24.57	87.82	39.24	456.81	30.70	110.24
64	E16_Da	NovelBoundary	1	8.16	1.08	22.89	18.69	2.90	19.81	2.74
65	E16a_E17a	KnownJunction	0	58.46	24.41	75.46	35.44	383.81	25.35	106.18
66	I16	Intron	0	6.02	4.85	11.23	11.51	1.40	11.74	2.10
67	I16_AR1	ActiveIntronRegion	1	6.27	3.23	12.63	13.70	0.99	15.49	2.44
68	I16_SR1	SilentIntronRegion	0	5.58	3.52	13.24	9.20	1.68	9.25	2.55
69	I16_AR2	ActiveIntronRegion	0	6.84	7.20	12.92	10.59	1.52	13.56	2.13
70	I16_SR2	SilentIntronRegion	0	5.95	4.79	8.96	13.53	1.25	12.17	1.65
71	E17_Aa	NovelBoundary	1	23.47	13.92	30.44	38.47	1.01	30.34	5.65
72	ER17a	ExonRegion	0	57.08	29.81	87.61	45.70	563.01	35.34	117.66
73	E17_Da	NovelBoundary	0	9.83	20.99	16.35	34.35	0.00	31.28	3.28
74	E17a_E18a	KnownJunction	1	30.31	32.00	57.19	33.43	253.40	26.67	98.80
75	I17	Intron	1	7.72	3.59	14.78	12.51	1.23	14.33	2.12
76	I17_AR1	ActiveIntronRegion	1	11.80	4.97	17.07	17.93	1.40	18.44	3.04
77	I17_SR1	SilentIntronRegion	1	5.08	2.88	14.55	9.72	1.28	12.42	1.59
78	E18_Aa	NovelBoundary	0	4.07	9.88	18.61	17.12	0.00	9.27	3.84
79	ER18a	ExonRegion	0	31.85	17.88	41.51	27.30	190.34	27.91	45.42
80	IG41	Intergenic	0	4.43	5.80	10.59	14.67	1.74	11.89	2.69
81	IG41_AR1	ActiveIntergenicRegion	0	7.67	8.78	21.75	15.89	1.14	19.89	5.13
82	IG41_SR1	SilentIntergenicRegion	0	5.06	5.96	10.79	18.10	3.40	15.32	2.73
83	IG41_AR2	ActiveIntergenicRegion	0	2.64	4.46	5.26	13.64	1.34	6.01	1.51