Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ITGB1BP1	Gene	0	13.94	9.17	16.62	5.90	25.31	15.12	55.70
2	238091	Transcript	0	23.63	17.34	28.08	7.48	48.64	12.97	22.70
3	355346	Transcript	0	0	0	0	0	0	0	0
4	359712	Transcript	0	3.72	0.96	5.66	2.51	5.34	2.88	14.04
5	360635	Transcript	0	8.40	3.03	4.52	0.79	8.95	14.78	44.28
6	ER1a	ExonRegion	0	16.33	12.70	16.17	4.72	65.02	10.19	59.75
7	E1a_E4a	KnownJunction	0	5.81	16.16	11.84	2.52	18.58	11.26	19.29
8	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.37	0.00	1.17
9	ER2b	ExonRegion	0	6.61	4.73	7.85	5.36	7.33	13.96	44.96
10	E2a_E3a	KnownJunction	1	5.62	1.63	2.99	0.00	5.39	13.69	28.83
11	E2a_E4a	KnownJunction	0	9.18	0.00	13.59	4.36	5.62	7.02	29.26
12	I2	Intron	0	3.76	1.64	5.36	0.84	2.08	1.18	17.32
13	I2_SR1	SilentIntronRegion	1	3.50	1.16	5.60	0.90	2.08	1.16	17.37
14	I2_AR1	ActiveIntronRegion	0	5.40	4.51	3.96	0.49	2.07	1.30	17.28
15	E3_Aa	NovelBoundary	1	4.67	1.44	3.22	0.00	2.84	0.00	24.75
16	ER3a	ExonRegion	1	14.63	3.39	8.07	0.88	14.14	18.08	69.85
17	E3_Da	NovelBoundary	1	0.98	2.71	1.85	0.00	1.11	3.91	15.08
18	E3a_E4a	KnownJunction	1	12.93	7.07	6.73	2.30	15.88	26.72	76.76
19	I3	Intron	0	6.22	1.40	4.50	1.34	2.11	1.72	13.88
20	I3_AR1	ActiveIntronRegion	0	7.62	1.52	4.95	1.73	2.15	2.31	17.22
21	E4_Aa	NovelBoundary	1	1.92	0.00	3.85	0.00	0.00	0.00	16.28
22	ER4a	ExonRegion	0	59.69	36.62	57.20	18.30	78.10	61.29	210.06
23	E4a_E5a	KnownJunction	0	63.34	37.96	63.36	14.52	156.46	67.62	283.30
24	E4a_E6a	NovelJunction	0	17.04	1.31	20.75	1.49	5.74	5.36	21.21
25	I4	Intron	0	3.24	0.40	3.95	1.08	2.23	1.51	11.96
26	I4_SR1	SilentIntronRegion	0	3.56	0.88	4.81	0.61	2.36	1.78	14.82
27	I4_AR1	ActiveIntronRegion	0	3.53	0.00	6.41	0.00	2.45	0.58	11.99
28	I4_SR2	SilentIntronRegion	1	3.24	0.41	2.02	1.67	1.77	0.39	12.55
29	I4_SR3	SilentIntronRegion	0	4.01	0.29	4.14	1.68	3.36	0.68	11.58
30	ER5a	ExonRegion	0	76.85	47.99	73.65	23.66	191.56	69.62	283.35
31	E5_Da	NovelBoundary	0	8.43	4.41	5.35	1.27	3.78	0.00	14.88
32	E5a_E6a	KnownJunction	0	85.64	48.68	94.10	28.15	158.17	70.83	220.82
33	I5	Intron	0	2.85	2.41	3.41	0.36	4.54	1.51	11.96
34	I5_AR1	ActiveIntronRegion	0	3.92	2.58	3.93	0.42	4.93	1.26	15.23
35	I5_AR2	ActiveIntronRegion	0	2.11	2.98	3.29	0.00	5.18	1.23	11.53
36	I5_AR4	ActiveIntronRegion	0	3.07	2.93	4.30	0.83	4.20	2.45	12.27
37	E6_Aa	NovelBoundary	1	44.36	1.52	45.11	1.22	1.18	2.89	9.73
38	ER6a	ExonRegion	0	113.01	56.33	118.42	29.37	182.23	96.41	304.71
39	E6a_E7a	KnownJunction	0	107.03	45.71	107.17	29.61	195.65	84.45	271.24
40	I6_AR2	ActiveIntronRegion	1	0.77	0.00	1.60	0.00	0.73	2.42	11.54
41	I6_AR4	ActiveIntronRegion	0	4.40	1.85	3.27	1.34	5.27	1.21	13.82
42	I6_AR5	ActiveIntronRegion	0	2.66	2.57	2.67	2.17	5.60	3.40	13.05
43	I6_AR6	ActiveIntronRegion	1	3.84	2.43	2.61	1.25	6.71	2.45	16.77
44	I6_AR7	ActiveIntronRegion	1	3.84	1.89	1.35	1.52	5.67	1.36	16.34
45	I6_AR8	ActiveIntronRegion	1	3.07	2.29	1.35	1.25	5.29	0.14	17.58
46	I6_SR3	SilentIntronRegion	1	2.06	0.51	1.03	0.97	1.63	0.00	12.67
47	ER7a	ExonRegion	0	103.44	57.29	111.28	21.32	194.26	94.31	343.83
48	E7a_E8a	KnownJunction	0	61.15	55.59	86.22	28.82	156.87	79.49	344.38
49	E7a_E8b	KnownJunction	0	23.63	17.34	28.08	7.48	48.64	12.97	22.70
50	E8_Aa	NovelBoundary	1	0.00	2.81	1.75	1.49	0.00	2.84	15.06
51	ER8a	ExonRegion	0	55.48	53.75	66.16	20.77	116.38	76.68	300.04
52	E8_Da	KnownBoundary	0	1.03	0.00	3.23	3.79	8.14	1.61	13.92
53	E8a_E8b	KnownJunction	0	43.51	45.66	63.37	19.78	111.14	82.89	274.26
54	ER8b	ExonRegion	0	1.99	2.89	3.38	3.17	10.03	1.61	11.70
55	E8_Ab	KnownBoundary	0	5.56	6.57	3.92	3.96	10.74	5.15	9.53
56	ER8c	ExonRegion	0	38.49	38.00	54.64	21.59	88.40	56.46	180.01
57	E8_Db	KnownBoundary	1	12.40	6.91	29.79	5.66	13.46	11.68	29.12
58	ER8d	ExonRegion	0	11.88	5.82	19.96	8.47	13.23	9.00	44.25
59	E8_Dc	KnownBoundary	0	1.82	0.00	1.42	0.00	1.18	0.00	4.43
60	ER8e	ExonRegion	0	0.42	0.04	0.31	0.00	0.39	0.62	1.67