Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CLIP4	Gene	0	69.62	119.32	97.66	89.51	0.82	56.10	311.56
2	401605	Transcript	0	10.24	16.80	13.17	8.54	0.18	6.30	10.58
3	401617	Transcript	0	0.65	0.21	0.23	0.00	0.00	0.21	0.35
4	404424	Transcript	1	9.59	30.59	1.49	4.12	0.00	4.90	84.80
5	379543	Transcript	0	12.05	10.09	12.35	10.16	0.12	3.42	36.48
6	320081	Transcript	0	0	0	0	0	0	0	0
7	402240	Transcript	0	23.59	36.04	35.88	28.77	0.00	10.03	50.30
8	ER1a	ExonRegion	0	0.00	0.00	0.08	0.00	0.00	0.00	0.00
9	ER1b	ExonRegion	0	0.00	0.00	0.70	0.01	0.00	0.00	0.00
10	E1a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	E1a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	ER2a	ExonRegion	1	7.07	22.01	1.25	4.66	0.00	6.54	81.80
13	E2a_E4a	KnownJunction	1	12.12	39.17	1.74	3.58	0.00	3.27	87.79
14	ER3a	ExonRegion	0	2.70	14.04	4.11	13.20	0.00	9.64	8.00
15	E3a_E4a	KnownJunction	0	10.73	45.16	15.92	38.47	0.00	21.31	27.04
16	I3_SR2	SilentIntronRegion	0	4.64	9.50	15.23	18.49	0.00	11.10	8.53
17	E4_Ab	NovelBoundary	0	17.29	67.78	31.76	45.11	0.00	27.15	110.14
18	ER4a	ExonRegion	0	23.64	97.75	25.58	49.21	0.00	29.52	143.90
19	ER4b	ExonRegion	0	65.02	167.25	97.97	105.12	0.38	66.91	342.74
20	E4a_E5a	KnownJunction	0	90.14	214.14	124.91	133.78	0.99	73.30	389.04
21	ER5a	ExonRegion	0	86.58	231.07	159.82	140.65	1.40	88.51	400.00
22	E5a_E6a	KnownJunction	0	106.16	201.92	181.11	147.27	2.03	74.29	474.05
23	ER6a	ExonRegion	0	105.93	235.14	172.90	168.13	1.56	92.28	514.25
24	E6a_E7a	KnownJunction	0	102.71	228.93	163.64	169.59	1.18	82.03	486.82
25	ER7a	ExonRegion	0	109.51	254.84	185.28	181.86	1.90	84.78	538.37
26	E7a_E8a	KnownJunction	0	111.59	229.82	156.09	163.79	1.08	72.17	514.78
27	ER8a	ExonRegion	0	117.62	269.01	179.38	202.35	1.56	103.11	591.02
28	E8a_E9a	KnownJunction	0	112.57	292.16	160.63	164.17	1.18	95.30	554.08
29	ER9a	ExonRegion	0	107.23	291.05	158.15	191.87	2.38	90.14	681.94
30	E9a_E10a	KnownJunction	0	76.96	261.24	98.64	145.02	0.88	60.06	501.20
31	E9a_E11a	NovelJunction	1	7.56	6.36	15.99	25.11	0.00	1.66	3.10
32	ER10a	ExonRegion	0	114.80	269.06	180.09	160.32	2.59	81.81	710.91
33	E10a_E11a	KnownJunction	0	120.35	268.78	177.95	157.43	0.99	78.93	571.82
34	ER11a	ExonRegion	0	101.48	264.51	188.13	188.33	1.34	92.07	605.19
35	E11a_E12a	KnownJunction	0	109.14	234.60	185.75	163.74	2.07	107.98	502.66
36	ER12a	ExonRegion	0	92.65	216.58	168.50	194.51	0.32	99.71	555.14
37	E12a_E13a	KnownJunction	0	94.63	220.94	181.47	202.67	0.90	95.49	548.56
38	ER13a	ExonRegion	0	103.11	216.08	163.51	184.81	1.10	86.91	529.28
39	E13_Da	KnownBoundary	1	30.08	71.06	43.96	51.88	0.00	16.13	13.89
40	E13a_E14a	KnownJunction	0	68.63	111.65	110.38	94.79	2.26	53.76	423.31
41	E13a_E15b	NovelJunction	0	1.03	9.80	0.00	1.16	0.00	6.57	4.54
42	E13a_E16a	NovelJunction	0	0.00	34.44	4.74	20.48	0.00	29.29	0.77
43	ER13b	ExonRegion	1	17.28	45.24	33.34	30.47	0.00	7.78	4.88
44	E13b_E14a	KnownJunction	1	10.30	8.33	28.57	25.28	0.00	2.09	0.89
45	I13_AR2	ActiveIntronRegion	0	19.05	17.24	25.72	17.60	0.00	8.30	13.01
46	I13_SR2	SilentIntronRegion	0	16.82	6.36	17.11	9.50	0.00	6.12	7.61
47	I13_AR3	ActiveIntronRegion	0	9.65	24.83	17.10	9.81	0.16	8.55	11.02
48	E14a_E14b	KnownJunction	0	43.19	54.57	45.74	30.56	0.00	20.23	145.12
49	ER14a	ExonRegion	0	86.67	131.60	130.88	106.97	1.33	49.87	447.64
50	E14_Ab	KnownBoundary	0	93.41	138.32	116.76	116.65	0.00	40.20	404.99
51	ER14b	ExonRegion	0	95.44	136.31	118.81	124.20	0.81	47.32	433.22
52	ER14c	ExonRegion	0	104.17	134.04	118.58	123.45	0.17	47.78	403.06
53	E14b_E15a	KnownJunction	0	4.77	1.26	2.93	2.87	0.00	0.00	8.97
54	E14b_E15b	KnownJunction	0	87.86	118.83	116.41	85.66	1.13	48.64	358.36
55	I14_AR1	ActiveIntronRegion	0	12.05	8.96	22.14	6.99	0.00	5.95	5.35
56	ER15a	ExonRegion	0	19.32	18.92	21.77	17.46	0.23	6.83	63.99
57	ER15b	ExonRegion	0	102.75	120.42	145.18	96.00	1.19	49.81	401.18
58	E15a_E16a	KnownJunction	0	111.49	114.46	146.19	99.02	0.00	52.88	383.70
59	ER16a	ExonRegion	0	93.54	144.61	127.89	101.77	0.21	61.53	372.31
60	E16_Da	NovelBoundary	0	19.01	16.21	25.16	13.68	0.00	19.72	19.22
61	E16a_E17a	KnownJunction	0	83.83	162.83	113.70	118.69	1.11	80.96	321.63
62	ER17a	ExonRegion	0	94.33	167.80	134.73	124.03	0.63	78.75	369.53
63	E17_Da	KnownBoundary	0	46.56	76.92	61.82	53.67	1.18	27.50	53.05
64	E17a_E18a	KnownJunction	0	40.54	74.11	59.55	48.01	0.00	33.34	301.98
65	ER17b	ExonRegion	0	30.73	50.40	39.44	25.62	0.55	18.91	31.74
66	E17_Db	NovelBoundary	0	19.14	34.07	30.80	13.55	1.18	17.71	25.11
67	I17_SR1	SilentIntronRegion	0	28.09	42.81	27.83	32.89	0.30	16.16	16.47
68	ER18a	ExonRegion	0	57.39	128.35	69.30	101.95	0.31	57.29	289.84
69	E18_Da	KnownBoundary	0	63.46	149.33	74.19	115.92	0.00	64.21	252.96
70	E18a_E19a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
71	ER18b	ExonRegion	0	48.60	124.78	67.14	78.11	0.21	67.45	251.16
72	E18_Db	KnownBoundary	0	30.74	63.42	50.60	37.33	0.00	40.49	173.57
73	E18_Dc	KnownBoundary	0	27.02	28.95	60.87	36.33	0.00	35.94	145.82
74	ER18c	ExonRegion	0	35.81	60.90	75.75	44.35	0.00	49.90	215.33
75	ER18d	ExonRegion	0	83.73	86.58	103.77	77.34	0.88	63.39	309.67
76	ER19a	ExonRegion	0	1.95	0.63	0.70	0.00	0.00	0.63	1.04