Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SH3YL1	Gene	0	41.35	55.63	36.29	28.99	32.92	9.81	31.22
2	402632	Transcript	0	9.93	3.19	8.06	3.39	4.76	1.16	3.72
3	403658	Transcript	0	0	0	0	0	0	0	0
4	405430	Transcript	0	4.95	3.96	4.60	3.28	4.25	1.00	2.31
5	309148	Transcript	0	0	0	0	0	0	0	0
6	403712	Transcript	0	2.31	4.86	2.03	0.00	4.05	0.00	4.05
7	403657	Transcript	1	18.99	6.70	13.22	4.90	14.14	3.04	6.32
8	356150	Transcript	0	0	0	0	0	0	0	0
9	ER1a	ExonRegion	0	0.21	0.13	0.33	0.13	0.67	3.97	2.37
10	ER2a	ExonRegion	0	4.27	2.91	3.68	1.96	6.39	0.00	1.58
11	E2a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	1.24	0.00	0.00
12	E2a_E8a	NovelJunction	1	5.59	3.21	11.61	6.23	18.67	3.86	0.77
13	ER3a	ExonRegion	1	23.07	77.38	12.54	38.05	25.63	4.43	23.76
14	E3_Da	NovelBoundary	1	4.97	4.28	2.23	6.53	3.07	0.00	9.37
15	E3a_E5a	NovelJunction	1	4.14	0.00	2.67	11.38	2.07	1.66	1.33
16	E3a_E8a	KnownJunction	1	52.74	161.65	25.26	83.58	63.23	10.53	47.55
17	E4_Aa	NovelBoundary	0	13.30	9.59	7.36	6.96	7.72	3.19	3.78
18	ER4a	ExonRegion	0	12.21	10.48	10.68	9.81	9.37	4.00	6.77
19	E4_Da	NovelBoundary	1	9.61	3.86	17.89	9.37	8.09	0.00	7.09
20	E4a_E5b	KnownJunction	0	3.34	2.44	4.05	1.33	0.00	0.00	0.89
21	I4	Intron	0	15.93	3.33	17.75	3.41	7.02	0.00	5.91
22	I4_SR1	SilentIntronRegion	0	16.00	3.35	17.84	3.43	7.05	0.00	5.94
23	E5_Aa	NovelBoundary	0	15.50	0.00	16.66	6.31	9.82	0.00	5.53
24	ER5a	ExonRegion	0	11.63	3.05	8.02	5.76	7.24	2.92	4.94
25	E5_Ab	KnownBoundary	0	27.76	4.57	17.70	9.97	13.46	4.74	8.43
26	ER5b	ExonRegion	0	18.70	10.12	18.11	10.51	11.70	6.11	9.64
27	E5_Da	NovelBoundary	1	24.43	5.73	24.00	20.05	10.03	0.00	7.21
28	E5a_E8a	KnownJunction	0	0.80	10.43	0.00	3.09	1.13	0.00	1.48
29	I5	Intron	0	19.38	5.47	22.55	8.98	8.40	1.36	7.62
30	I5_AR1	ActiveIntronRegion	0	19.40	5.48	22.58	8.99	8.41	1.37	7.63
31	E6_Aa	NovelBoundary	1	26.47	9.04	26.17	18.23	20.93	0.00	7.60
32	ER6a	ExonRegion	0	36.42	16.81	35.19	19.86	21.50	4.28	16.35
33	E6_Da	NovelBoundary	0	10.61	2.50	10.66	1.65	12.59	0.00	1.96
34	E6a_E7a	KnownJunction	0	0.80	0.00	1.38	0.00	1.18	0.00	0.00
35	E6a_E8a	NovelJunction	1	38.14	11.90	46.80	24.17	17.01	3.81	18.54
36	E7_Aa	NovelBoundary	0	10.13	5.04	12.62	4.17	6.32	6.41	4.82
37	ER7a	ExonRegion	1	39.50	11.66	30.59	5.20	50.80	9.32	11.17
38	E7_Ab	KnownBoundary	0	7.98	3.49	7.59	1.68	5.16	1.21	3.07
39	ER7b	ExonRegion	0	8.38	4.93	5.71	0.30	5.86	1.17	2.16
40	E7a_E8a	KnownJunction	0	10.97	4.68	6.24	1.49	2.24	1.66	0.00
41	ER8a	ExonRegion	0	94.18	175.20	71.28	97.56	74.19	29.60	67.02
42	E8a_E9a	KnownJunction	0	92.68	195.41	71.97	103.00	67.80	43.23	67.70
43	ER9a	ExonRegion	0	119.71	222.28	94.35	107.90	107.00	43.57	106.79
44	E9a_E10a	KnownJunction	0	88.52	261.16	72.64	95.28	184.51	41.97	103.96
45	ER10a	ExonRegion	0	77.82	278.00	62.80	99.45	130.36	56.21	104.21
46	E10_Da	NovelBoundary	0	16.26	5.52	10.71	2.36	6.57	0.00	8.64
47	E10a_E11a	KnownJunction	0	3.81	0.00	0.57	0.00	2.77	0.00	0.53
48	E10a_E12a	KnownJunction	0	47.33	26.56	42.78	13.92	23.61	17.80	57.71
49	E10a_E13a	NovelJunction	0	10.71	21.67	9.54	12.27	8.67	7.18	14.26
50	E10a_E15a	KnownJunction	1	10.93	254.86	3.71	77.67	68.08	39.18	27.16
51	I10	Intron	0	18.26	6.01	11.41	5.20	8.27	0.86	10.07
52	I10_SR1	SilentIntronRegion	0	19.85	5.77	12.04	5.07	8.68	0.82	10.29
53	I10_SR2	SilentIntronRegion	0	14.87	3.12	10.60	2.39	6.52	1.01	6.85
54	I10_AR2	ActiveIntronRegion	1	17.61	10.24	10.54	8.97	9.21	0.81	13.35
55	E11_Aa	NovelBoundary	0	25.08	10.88	13.05	7.07	18.81	0.00	11.49
56	ER11a	ExonRegion	1	23.50	7.65	8.28	2.65	8.60	1.66	6.96
57	E11_Da	NovelBoundary	1	18.51	3.52	5.63	1.52	5.76	0.00	5.63
58	E11a_E13a	KnownJunction	0	9.91	4.07	3.33	1.68	0.00	3.00	2.89
59	ER12a	ExonRegion	1	45.59	29.14	48.04	17.23	28.75	11.89	60.86
60	E12_Da	NovelBoundary	0	18.51	7.20	14.95	2.55	6.55	3.32	7.04
61	E12a_E13a	KnownJunction	0	43.14	35.78	50.70	20.83	23.65	9.35	61.27
62	E12a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
63	E13_Aa	NovelBoundary	1	32.35	7.43	13.16	0.00	13.60	0.00	7.74
64	ER13a	ExonRegion	0	71.88	53.88	58.13	22.68	29.88	14.45	82.59
65	E13_Da	NovelBoundary	0	15.34	6.04	17.19	5.53	2.14	3.32	6.21
66	E13a_E15a	KnownJunction	1	77.22	62.60	57.28	26.47	21.83	23.32	78.51
67	E14_Aa	NovelBoundary	1	17.96	1.63	13.38	1.68	4.36	0.00	3.55
68	ER14a	ExonRegion	1	18.17	6.52	16.15	4.41	7.03	0.57	6.22
69	E14_Da	NovelBoundary	0	14.12	10.69	14.92	5.80	4.24	0.00	5.90
70	I14	Intron	0	17.96	4.35	11.84	3.38	4.98	0.80	5.63
71	I14_SR1	SilentIntronRegion	0	19.49	4.24	13.17	3.52	4.87	0.57	5.91
72	I14_AR1	ActiveIntronRegion	0	19.21	2.02	7.56	0.00	4.72	0.00	4.05
73	I14_SR6	SilentIntronRegion	0	13.26	4.81	7.76	3.04	5.41	1.57	4.82
74	E15_Aa	NovelBoundary	0	27.14	9.51	17.79	7.99	3.11	1.13	11.58
75	ER15a	ExonRegion	0	91.06	305.43	71.56	105.90	91.41	49.40	122.35
76	E15a_E16a	KnownJunction	0	75.82	230.85	44.26	95.36	65.31	49.93	77.02
77	E15a_E17a	NovelJunction	1	11.28	27.37	7.29	28.74	1.98	9.49	0.89
78	ER16a	ExonRegion	0	96.76	208.11	69.32	86.14	85.55	26.66	94.52
79	E16a_E17a	KnownJunction	0	127.68	210.72	119.22	85.04	141.94	29.45	123.41
80	ER17a	ExonRegion	0	124.91	281.03	109.88	124.06	112.88	38.27	116.68
81	E17_Da	NovelBoundary	1	42.28	22.25	35.62	8.10	5.49	8.92	6.33
82	E17a_E18a	KnownJunction	0	88.64	269.26	106.37	107.39	136.82	37.28	125.84
83	I17	Intron	0	18.73	18.48	11.26	10.10	8.53	2.89	7.42
84	I17_AR1	ActiveIntronRegion	0	18.77	18.53	11.28	10.13	8.55	2.90	7.43
85	E18_Aa	NovelBoundary	0	12.77	15.24	10.96	3.36	7.35	3.97	10.88
86	ER18a	ExonRegion	0	114.34	232.68	117.50	115.95	144.00	29.50	127.16
87	E18a_E19a	KnownJunction	1	14.30	58.38	18.34	49.03	6.73	1.10	8.71
88	E18a_E20a	KnownJunction	0	113.59	143.55	99.56	76.04	132.05	18.49	100.42
89	ER19a	ExonRegion	1	16.08	69.57	16.55	39.40	6.27	3.03	8.50
90	E19a_E20a	KnownJunction	1	12.27	69.30	13.34	33.46	4.38	4.05	7.34
91	I19_AR2	ActiveIntronRegion	1	7.17	5.91	3.93	3.76	2.17	1.63	8.14
92	ER20a	ExonRegion	0	118.12	179.73	108.31	96.05	112.88	24.18	104.71
93	E20_Da	KnownBoundary	0	96.30	133.67	90.92	65.29	93.89	20.34	79.64
94	ER20b	ExonRegion	0	63.86	128.46	58.68	63.97	59.09	28.10	74.95
95	ER20c	ExonRegion	1	6.15	9.72	2.03	6.23	8.91	0.00	8.77
96	ER20d	ExonRegion	0	3.84	9.72	2.03	6.23	8.10	0.00	7.42
97	ER20e	ExonRegion	0	3.46	7.29	2.03	2.49	5.67	0.00	4.72
98	ER20f	ExonRegion	0	2.31	4.86	2.03	0.00	4.05	0.00	4.05
99	IG2_AR1	ActiveIntergenicRegion	0	3.45	19.90	4.29	16.98	0.00	1.30	41.77