Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CPT1B	Gene	0	72.28	22.80	27.66	8.79	45.12	6.70	21.74
2	395651	Transcript	0	13.53	6.12	6.83	2.13	5.33	3.30	5.65
3	360719	Transcript	0	14.40	1.60	5.67	2.10	3.88	0.00	1.24
4	395650	Transcript	0	0.75	0.00	0.00	0.00	0.71	0.00	0.00
5	312108	Transcript	0	0	0	0	0	0	0	0
6	405237	Transcript	0	1.89	0.06	0.21	0.04	1.30	0.01	0.33
7	ER1a	ExonRegion	0	41.85	24.03	20.59	8.43	21.27	8.79	18.06
8	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	Ix	Intron	0	46.13	13.68	21.51	3.88	19.21	1.91	13.85
10	Ix_AR1	ActiveIntronRegion	0	46.58	13.82	21.71	3.92	19.41	1.93	13.98
11	ER2a	ExonRegion	0	22.20	3.34	7.73	2.14	14.29	2.00	8.07
12	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	Ix	Intron	0	14.22	3.22	4.89	0.66	11.42	0.32	3.02
14	Ix_AR2	ActiveIntronRegion	0	21.19	4.17	5.62	1.22	11.94	0.00	3.95
15	Ix_AR1	ActiveIntronRegion	0	6.56	2.29	4.39	0.00	11.77	0.77	2.11
16	ER3a	ExonRegion	0	24.47	24.11	12.39	9.39	6.70	9.36	14.06
17	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	ER4a	ExonRegion	0	64.90	37.41	33.26	13.50	20.88	20.23	30.25
19	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	ER5a	ExonRegion	0	54.71	11.61	23.47	2.29	19.13	10.26	15.34
21	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	ER6a	ExonRegion	0	6.36	0.65	3.60	0.00	3.39	3.06	1.42
23	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	ER7a	ExonRegion	0	2.91	1.04	3.30	0.00	0.15	0.61	1.16
25	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	ER8a	ExonRegion	0	7.00	0.56	5.01	0.43	3.61	0.18	2.43
27	E8_Da	NovelBoundary	1	39.87	30.79	25.36	3.36	23.49	23.40	15.85
28	E8a_E11b	KnownJunction	0	5.54	1.34	6.68	0.00	1.18	1.66	5.27
29	I8	Intron	0	18.46	3.98	5.48	0.73	12.72	0.70	3.52
30	I8_AR2	ActiveIntronRegion	0	41.01	4.92	11.55	0.99	27.71	1.17	8.81
31	ER9a	ExonRegion	0	14.40	1.60	5.67	2.10	3.88	0.00	1.24
32	ER10a	ExonRegion	0	0.75	0.00	0.00	0.00	0.71	0.00	0.00
33	E10_Ab	KnownBoundary	0	0.85	0.00	0.00	0.00	1.18	0.00	0.00
34	E10a_E11b	KnownJunction	0	0.00	0.00	0.00	0.00	0.88	0.00	0.00
35	ER10b	ExonRegion	0	0.47	0.00	0.00	0.00	0.76	0.00	0.00
36	ER11a	ExonRegion	0	1.89	0.06	0.21	0.04	1.30	0.01	0.33
37	E11_Ab	KnownBoundary	0	5.22	0.00	0.00	0.00	3.18	0.00	0.77
38	ER11b	ExonRegion	0	74.49	17.28	31.10	4.59	31.08	2.77	21.28
39	E11a_E12a	KnownJunction	1	98.55	36.33	32.62	3.31	51.13	5.68	31.41
40	ER12a	ExonRegion	0	74.77	27.45	28.28	4.77	39.73	4.75	20.92
41	E12a_E13a	KnownJunction	1	73.37	16.66	27.71	1.68	29.18	8.23	14.27
42	E12a_E15a	NovelJunction	1	0.00	0.00	0.00	0.00	0.00	0.00	9.34
43	ER13a	ExonRegion	0	84.61	20.78	33.49	4.77	51.74	6.37	18.51
44	E13_Da	NovelBoundary	1	33.20	8.35	21.97	0.00	17.27	1.15	2.71
45	E13a_E14a	KnownJunction	1	89.78	16.42	27.23	7.40	37.69	1.66	10.09
46	I13	Intron	0	19.22	6.32	14.42	0.83	16.84	0.43	4.90
47	I13_AR1	ActiveIntronRegion	0	19.39	6.38	14.55	0.83	16.98	0.43	4.94
48	E14_Aa	NovelBoundary	0	25.15	7.91	18.18	1.68	18.42	0.00	5.32
49	ER14a	ExonRegion	0	98.64	24.01	42.20	10.70	63.54	5.18	22.30
50	E14a_E15a	KnownJunction	0	128.30	33.08	63.24	11.08	94.24	4.29	29.31
51	ER15a	ExonRegion	0	162.57	31.26	69.41	12.08	103.52	6.19	37.17
52	E15a_E16a	KnownJunction	0	139.38	33.63	56.63	17.91	102.45	9.06	38.44
53	ER16a	ExonRegion	0	135.20	31.66	47.29	12.82	93.38	9.43	42.12
54	E16a_E17a	KnownJunction	0	151.43	32.10	56.04	16.96	78.43	8.33	44.50
55	ER17a	ExonRegion	0	148.34	39.75	58.43	19.24	95.35	8.85	45.39
56	E17_Da	NovelBoundary	1	35.95	0.00	11.57	0.00	2.35	0.00	0.75
57	E17a_E18a	KnownJunction	0	94.21	35.86	39.68	18.31	69.48	8.39	34.24
58	ER18a	ExonRegion	0	74.19	30.03	28.67	16.99	69.22	10.27	44.15
59	E18a_E19a	KnownJunction	0	44.66	26.19	16.47	12.08	32.46	7.02	35.26
60	E19_Aa	NovelBoundary	1	15.82	1.29	9.66	1.03	5.28	0.00	2.21
61	ER19a	ExonRegion	0	69.02	22.16	24.89	9.77	56.93	4.85	28.64
62	E19a_E20a	KnownJunction	0	80.80	13.77	23.81	11.03	61.83	2.73	28.55
63	ER20a	ExonRegion	0	128.63	24.78	38.35	16.17	84.41	4.05	37.74
64	E20a_E21a	KnownJunction	0	156.03	43.58	45.73	13.71	100.79	6.41	42.49
65	ER21a	ExonRegion	0	163.52	34.62	46.13	20.88	102.35	6.94	39.29
66	E21a_E22a	KnownJunction	0	170.96	35.23	46.07	15.17	91.96	6.78	36.10
67	ER22a	ExonRegion	0	131.72	29.42	42.48	16.70	102.33	4.69	30.22
68	E22a_E23a	KnownJunction	0	124.66	32.73	27.95	14.03	76.60	7.24	24.79
69	ER23a	ExonRegion	0	118.95	28.22	41.63	14.63	97.71	5.85	31.64
70	E23a_E24a	KnownJunction	0	125.24	23.83	41.24	12.84	88.89	6.86	31.97
71	ER24a	ExonRegion	0	146.11	34.96	59.13	13.57	131.98	10.03	42.46
72	E24a_E25a	KnownJunction	0	187.75	39.25	66.75	16.93	108.12	10.85	39.96
73	ER25a	ExonRegion	0	151.53	41.54	56.37	12.99	98.17	8.80	35.18
74	E25a_E26a	KnownJunction	0	210.11	31.53	66.56	8.94	166.99	2.95	47.08
75	ER26a	ExonRegion	0	170.00	37.91	55.39	10.81	125.32	4.98	38.15
76	E26a_E27a	KnownJunction	0	176.56	42.01	59.71	16.74	98.46	18.17	32.12
77	ER27a	ExonRegion	0	173.91	51.02	48.23	15.53	87.96	11.65	31.63
78	E27a_E28a	KnownJunction	0	147.00	40.14	40.06	15.50	69.37	15.33	29.64
79	ER28a	ExonRegion	0	127.75	44.13	38.45	14.72	66.31	14.11	27.67
80	E28_Da	KnownBoundary	0	39.77	12.93	15.89	5.63	19.57	2.65	5.73
81	E28a_E28b	KnownJunction	0	69.26	24.22	20.06	8.80	32.16	2.57	18.57
82	ER28b	ExonRegion	0	28.77	8.01	5.81	2.71	15.01	1.41	5.62
83	E28_Db	KnownBoundary	0	10.01	2.52	3.68	1.54	2.26	0.00	3.24
84	E28b_E28b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
85	ER28c	ExonRegion	0	7.76	2.01	2.12	1.57	3.33	0.03	2.38
86	E28_Ab	KnownBoundary	0	4.31	0.00	0.00	0.00	2.05	0.00	1.65
87	ER28d	ExonRegion	0	29.70	15.22	9.18	5.50	14.52	3.38	10.31
88	ER28e	ExonRegion	0	0.77	0.00	0.68	1.25	2.43	0.00	0.67