Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SERHL2	Gene	0	170.15	27.52	8.33	14.23	8.94	8.61	6.73
2	340239	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	356720	Transcript	0	0.72	0.08	0.00	0.08	0.00	0.00	0.00
4	327678	Transcript	0	0	0	0	0	0	0	0
5	335879	Transcript	0	1.38	3.68	0.00	0.00	0.00	0.83	0.00
6	407614	Transcript	0	0	0	0	0	0	0	0
7	IG4_AR3	ActiveIntergenicRegion	0	0.53	4.58	1.13	10.70	0.00	5.30	0.00
8	IG4_SR3	SilentIntergenicRegion	0	0.58	4.15	0.00	4.86	0.28	8.81	0.00
9	ER1a	ExonRegion	0	146.82	13.75	2.89	17.99	2.29	17.02	1.48
10	E1_Da	NovelBoundary	1	204.99	12.27	2.83	30.91	0.00	20.13	3.01
11	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	E1a_E3a	KnownJunction	0	315.86	18.42	4.73	15.04	0.00	13.11	0.00
13	E1a_E4a	KnownJunction	0	1.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER1b	ExonRegion	0	362.56	14.81	4.10	9.09	2.39	13.14	0.00
15	E2a_E9b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	ER2a	ExonRegion	0	2.15	0.24	0.00	0.25	0.00	0.00	0.00
17	I2	Intron	0	3.21	13.18	3.06	23.77	0.27	17.05	0.91
18	I2_SR1	SilentIntronRegion	0	3.29	13.60	3.20	24.60	0.28	17.66	0.94
19	ER3a	ExonRegion	0	265.77	6.86	2.37	1.60	0.23	7.36	0.00
20	ER3b	ExonRegion	0	110.04	6.45	1.28	1.01	0.51	4.24	0.00
21	E3b_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	I3	Intron	0	8.62	17.61	6.43	29.94	2.12	20.58	1.13
23	I3_SR1	SilentIntronRegion	0	8.73	17.84	6.52	30.32	2.15	20.86	1.15
24	ER4a	ExonRegion	0	147.37	4.33	1.09	0.42	1.59	1.05	0.21
25	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	E4a_E6a	KnownJunction	0	1.75	7.36	0.00	0.00	0.00	1.66	0.00
27	ER5a	ExonRegion	0	23.25	0.14	0.97	1.07	1.33	0.00	2.12
28	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	ER6a	ExonRegion	0	74.62	9.05	1.35	2.12	1.90	1.29	2.02
30	ER7a	ExonRegion	0	112.44	11.60	1.47	2.68	1.07	2.35	1.37
31	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	ER8a	ExonRegion	0	138.77	19.99	2.89	5.02	2.74	8.44	4.35
33	E8a_E9a	KnownJunction	0	266.12	20.23	2.93	4.39	1.04	5.57	4.63
34	E8a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	ER9a	ExonRegion	1	249.57	30.41	2.61	3.88	4.23	6.66	4.59
36	E9_Ab	KnownBoundary	1	140.91	18.99	0.00	1.03	4.22	2.71	3.73
37	E9_Ac	KnownBoundary	1	123.12	16.68	4.90	1.68	5.53	6.24	3.64
38	ER9b	ExonRegion	1	229.76	26.19	3.16	2.08	6.48	8.31	4.95
39	ER9c	ExonRegion	1	198.73	23.08	4.74	1.49	5.31	6.98	4.70
40	E9_Da	NovelBoundary	0	9.88	8.80	2.51	9.56	6.22	1.53	5.72
41	E9a_E10a	KnownJunction	0	154.53	10.11	5.02	1.25	3.50	6.00	4.20
42	E9a_E11a	NovelJunction	0	46.55	4.28	1.58	3.22	0.00	7.08	0.00
43	Ix	Intron	0	11.50	23.13	8.85	20.25	6.82	18.20	5.94
44	Ix_SR1	SilentIntronRegion	0	10.44	21.44	7.11	17.85	5.56	18.14	4.97
45	Ix_AR1	ActiveIntronRegion	0	21.52	42.78	15.24	50.59	12.09	31.61	11.71
46	Ix_AR2	ActiveIntronRegion	0	17.24	39.09	16.73	45.11	10.49	23.93	10.82
47	Ix_AR3	ActiveIntronRegion	0	14.99	39.88	14.80	37.20	8.20	28.50	10.16
48	Ix_SR2	SilentIntronRegion	0	14.20	27.07	9.36	23.72	9.18	20.55	7.36
49	Ix	Intron	0	18.29	17.41	11.69	13.70	10.77	12.29	6.74
50	Ix_AR1	ActiveIntronRegion	0	22.48	17.43	11.97	12.86	10.81	10.38	6.70
51	Ix_SR2	SilentIntronRegion	0	10.60	17.90	11.49	15.78	11.04	16.40	7.03
52	E10_Aa	NovelBoundary	0	7.06	14.24	9.18	8.64	4.50	12.46	7.68
53	ER10a	ExonRegion	1	196.65	16.77	5.57	2.71	3.84	4.83	7.48
54	E10_Da	NovelBoundary	0	11.92	20.18	6.04	17.18	3.50	16.91	1.25
55	E10a_E11a	KnownJunction	1	224.86	24.43	4.94	4.39	3.46	3.00	7.48
56	Ix	Intron	1	24.65	25.89	10.80	22.12	18.14	13.13	9.30
57	Ix_SR1	SilentIntronRegion	0	24.68	25.92	10.81	22.15	18.16	13.14	9.31
58	E11_Aa	NovelBoundary	0	45.63	60.69	26.87	83.98	18.72	28.09	28.92
59	ER11a	ExonRegion	0	305.06	43.54	10.96	25.30	19.83	15.60	14.71
60	E11_Da	NovelBoundary	1	76.46	41.22	25.90	27.39	28.89	6.06	29.24
61	E11a_E12a	KnownJunction	0	183.89	12.77	3.29	2.95	0.00	6.38	2.18
62	Ix	Intron	1	46.00	39.82	15.73	29.59	20.11	10.64	19.35
63	Ix_AR1	ActiveIntronRegion	0	37.96	23.98	9.28	23.95	11.82	8.75	9.60
64	Ix_AR2	ActiveIntronRegion	0	53.30	53.89	21.46	34.71	27.45	12.36	27.97
65	E12_Aa	NovelBoundary	0	89.91	62.16	39.79	50.34	18.56	26.50	33.03
66	ER12a	ExonRegion	0	358.80	65.25	17.25	31.41	24.68	16.63	17.99
67	E12_Da	NovelBoundary	0	25.25	75.14	32.10	56.78	35.02	27.47	29.67
68	E12a_E13a	KnownJunction	0	466.75	23.80	9.08	7.23	0.00	12.33	7.07
69	Ix	Intron	1	15.83	36.03	15.21	27.06	16.19	12.77	14.68
70	Ix_AR1	ActiveIntronRegion	0	20.47	43.47	15.71	33.17	18.91	13.81	23.00
71	Ix_SR1	SilentIntronRegion	0	21.27	43.54	16.86	23.11	21.45	17.92	12.49
72	Ix_AR2	ActiveIntronRegion	0	9.18	26.27	13.78	26.46	10.80	8.45	11.42
73	E13_Aa	NovelBoundary	1	3.84	37.31	7.04	30.99	6.18	6.83	8.80
74	ER13a	ExonRegion	0	291.57	46.16	11.78	23.01	17.76	12.96	9.10
75	E13_Da	KnownBoundary	1	244.51	111.71	71.71	145.43	53.28	30.15	81.45
76	ER13b	ExonRegion	0	95.31	41.26	17.89	25.73	14.31	8.48	11.46