Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RPL3	Gene	0	32.68	28.49	33.94	31.93	409.77	24.77	27.70
2	216146	Transcript	0	0	0	0	0	0	0	0
3	328995	Transcript	0	0.38	0.00	0.34	0.00	1.85	0.00	0.00
4	402527	Transcript	1	9.73	29.18	20.70	48.82	6.35	45.23	7.29
5	401609	Transcript	0	1.44	1.37	6.82	4.17	6.53	3.57	2.19
6	IG42_AR1	ActiveIntergenicRegion	0	14.99	13.30	5.08	5.88	12.63	3.54	3.42
7	ER1a	ExonRegion	0	0.11	6.41	2.55	3.86	3.50	1.40	0.69
8	E1_Ab	NovelBoundary	1	1.99	20.18	5.85	9.64	14.50	3.99	4.04
9	E1_Da	NovelBoundary	1	6.08	21.15	25.10	34.11	3.00	28.65	7.40
10	E1a_E2b	KnownJunction	1	240.13	210.28	339.37	156.59	827.71	129.93	825.69
11	ER1b	ExonRegion	1	9.06	20.44	11.73	23.47	159.86	16.77	2.84
12	ER1c	ExonRegion	1	4.66	27.82	12.80	43.42	5.18	37.68	6.97
13	E1_Db	NovelBoundary	1	28.39	16.21	57.31	27.52	0.00	15.49	21.98
14	E1b_E2b	KnownJunction	1	14.79	30.53	28.61	54.21	7.52	52.77	7.61
15	I1	Intron	1	8.22	16.65	34.05	17.09	2.51	17.86	5.92
16	I1_AR1	ActiveIntronRegion	1	8.28	16.76	34.28	17.20	2.53	17.98	5.96
17	I1	Intron	1	25.28	15.67	64.45	32.44	9.42	18.69	10.63
18	I1_SR1	SilentIntronRegion	1	7.15	9.42	23.07	16.80	2.41	3.88	4.42
19	I1_AR2	ActiveIntronRegion	1	14.86	20.05	39.74	32.84	7.42	12.67	7.98
20	I1_SR2	SilentIntronRegion	1	20.59	24.43	52.52	41.02	11.17	16.71	11.26
21	I1_AR3	ActiveIntronRegion	1	28.46	16.21	72.08	34.73	10.42	21.16	11.63
22	E2_Aa	NovelBoundary	1	14.94	10.09	54.62	15.47	2.93	12.78	11.32
23	E2_Ab	NovelBoundary	1	7.64	6.17	33.24	21.78	7.81	11.63	12.90
24	ER2a	ExonRegion	1	2.10	2.75	13.64	8.35	12.25	7.14	4.37
25	ER2b	ExonRegion	0	8.62	7.00	13.29	11.58	48.89	11.80	5.49
26	E2_Da	NovelBoundary	1	13.27	18.34	29.83	10.51	6.39	16.64	24.22
27	E2a_E3a	KnownJunction	1	178.33	294.53	288.41	309.22	138.57	275.23	683.48
28	I2	Intron	1	36.82	32.40	46.01	15.10	17.91	13.99	20.83
29	I2_AR1	ActiveIntronRegion	0	36.40	32.85	47.29	16.71	19.88	17.31	20.34
30	I2_AR2	ActiveIntronRegion	1	70.81	46.63	67.53	13.67	21.18	15.28	28.85
31	I2_AR3	ActiveIntronRegion	1	59.04	43.33	61.30	14.96	20.38	15.94	30.02
32	I2_SR1	SilentIntronRegion	1	44.44	36.63	58.96	12.68	15.87	9.81	23.16
33	I2_SR2	SilentIntronRegion	1	35.74	32.00	39.44	16.29	14.97	7.85	25.68
34	I2_SR3	SilentIntronRegion	1	7.60	14.09	9.56	3.93	5.87	1.39	8.54
35	E3_Aa	NovelBoundary	1	11.37	20.99	25.58	13.98	5.60	10.34	11.11
36	ER3a	ExonRegion	1	58.59	23.62	52.32	12.26	1255.79	21.61	19.53
37	E3_Da	NovelBoundary	1	18.41	45.34	60.14	22.92	15.17	18.12	26.21
38	E3a_E4a	KnownJunction	0	145.00	462.11	152.04	337.66	484.25	278.26	317.23
39	E3a_E6a	NovelJunction	1	0.97	2.73	5.42	13.33	0.00	21.79	1.32
40	E3_Db	NovelBoundary	1	30.38	62.13	65.51	38.20	15.42	50.97	31.17
41	E3b_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	ER3b	ExonRegion	0	1.54	0.00	1.35	0.00	6.48	0.00	0.00
43	I3	Intron	1	137.00	410.91	288.97	839.24	53.61	559.38	95.65
44	I3_AR1	ActiveIntronRegion	1	137.45	412.16	289.91	841.73	53.78	561.07	95.96
45	E4_Aa	NovelBoundary	1	246.19	1689.07	479.85	3817.89	83.15	2292.34	167.55
46	ER4a	ExonRegion	1	27.38	1.91	20.61	3.50	215.22	0.86	2.47
47	E4_Da	NovelBoundary	1	7.69	9.59	17.26	12.95	10.93	8.50	7.77
48	E4a_E6a	KnownJunction	1	163.96	607.47	157.89	595.84	438.21	415.88	441.38
49	I4	Intron	1	15.24	17.01	32.16	14.16	10.91	11.12	14.52
50	I4_SR1	SilentIntronRegion	1	11.84	16.67	25.82	12.04	7.72	6.92	11.91
51	I4_AR2	ActiveIntronRegion	1	17.55	22.78	35.73	12.89	6.55	12.16	16.36
52	I4_AR3	ActiveIntronRegion	1	17.67	25.51	37.81	15.64	8.61	13.49	17.54
53	I4_SR2	SilentIntronRegion	1	18.55	14.84	38.13	17.70	13.05	13.91	16.64
54	I4_SR5	SilentIntronRegion	1	18.05	19.46	30.04	13.31	11.04	11.79	13.08
55	I4_SR6	SilentIntronRegion	1	7.89	20.24	25.93	8.91	9.48	7.60	13.11
56	E5a_E6b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
57	ER5a	ExonRegion	0	0.00	0.00	0.00	0.00	0.93	0.00	0.00
58	I5	Intron	1	5.52	17.64	16.33	9.02	8.98	12.47	8.22
59	I5_SR1	SilentIntronRegion	1	5.73	18.14	17.11	9.36	9.35	13.04	8.63
60	E6_Aa	NovelBoundary	1	9.08	34.10	22.06	26.55	8.62	26.80	14.16
61	E6_Ab	NovelBoundary	1	61.59	225.49	74.54	250.73	141.13	166.94	176.39
62	I5_AR1	ActiveIntronRegion	0	1.66	10.12	2.03	2.91	2.56	2.25	0.67
63	ER6a	ExonRegion	1	26.27	4.74	16.19	2.91	161.93	2.28	5.62
64	ER6b	ExonRegion	0	63.72	43.33	75.76	40.51	713.90	26.90	92.84
65	E6_Da	NovelBoundary	1	15.59	55.17	39.68	24.82	22.71	14.74	35.60
66	E6a_E7a	KnownJunction	1	101.81	387.27	105.79	436.19	265.08	324.55	396.69
67	I6	Intron	1	16.93	37.75	43.20	23.80	20.65	12.97	29.77
68	I6_AR1	ActiveIntronRegion	1	17.02	37.95	43.43	23.92	20.76	13.04	29.92
69	E7_Aa	NovelBoundary	1	18.48	63.10	42.52	21.51	18.12	33.87	23.73
70	ER7a	ExonRegion	0	122.31	148.35	123.82	166.06	1468.24	114.28	122.51
71	E7_Da	NovelBoundary	1	16.41	30.45	22.81	21.62	17.34	7.05	22.67
72	E7a_E8a	KnownJunction	1	129.81	431.93	140.28	531.26	497.90	394.81	414.05
73	I7	Intron	1	19.98	45.94	37.47	22.79	22.06	11.30	26.73
74	I7_SR1	SilentIntronRegion	1	3.73	18.40	12.39	9.62	6.13	1.23	8.58
75	I7_AR1	ActiveIntronRegion	1	6.87	25.59	18.54	12.16	11.74	1.99	13.91
76	I7_SR2	SilentIntronRegion	1	11.83	34.99	25.88	17.08	16.28	3.68	19.36
77	I7_AR2	ActiveIntronRegion	1	14.60	37.46	32.74	17.46	21.73	3.68	23.27
78	I7_SR3	SilentIntronRegion	1	13.63	48.64	36.72	20.77	23.93	12.56	28.10
79	I7_SR4	SilentIntronRegion	1	12.75	51.46	28.76	23.06	16.23	9.91	24.81
80	I7_AR3	ActiveIntronRegion	1	24.72	51.02	41.43	16.83	17.14	12.87	32.04
81	I7_SR5	SilentIntronRegion	1	25.66	50.07	47.68	16.88	20.56	13.53	32.81
82	I7_AR4	ActiveIntronRegion	1	33.42	55.32	53.78	30.64	29.99	15.51	34.62
83	I7_AR5	ActiveIntronRegion	1	22.32	35.18	28.51	26.67	26.44	9.86	22.23
84	E8_Aa	NovelBoundary	1	38.59	58.93	53.27	39.20	24.46	23.07	40.86
85	I7_AR6	ActiveIntronRegion	1	14.47	19.64	17.67	13.20	12.62	4.50	11.58
86	I7_SR6	SilentIntronRegion	0	6.15	8.14	7.86	8.73	5.67	2.21	5.87
87	ER8a	ExonRegion	0	31.48	11.59	22.57	18.30	243.91	12.34	16.99
88	E8_Da	NovelBoundary	1	29.09	65.07	67.38	64.21	48.87	29.08	65.25
89	E8a_E9a	KnownJunction	1	74.02	390.29	69.95	397.05	214.76	289.41	312.05
90	E8a_E10a	NovelJunction	1	53.67	523.33	106.54	948.76	60.44	825.38	44.71
91	I8	Intron	1	19.18	48.64	42.91	34.93	32.27	25.30	56.59
92	I8_AR1	ActiveIntronRegion	1	19.36	49.07	43.32	35.27	32.57	25.56	57.14
93	I8	Intron	1	5.63	17.35	19.78	11.54	12.41	5.18	18.68
94	I8_AR1	ActiveIntronRegion	1	5.73	17.65	20.13	11.74	12.69	5.27	19.01
95	E9_Aa	NovelBoundary	1	30.39	80.23	61.96	54.53	32.67	35.54	62.61
96	ER9a	ExonRegion	0	6.98	0.00	5.60	0.00	74.68	0.00	2.02
97	ER9b	ExonRegion	0	0.37	0.00	0.43	0.00	0.33	0.00	0.58
98	E9_Db	NovelBoundary	1	15.17	47.53	40.52	35.35	23.40	25.49	41.50
99	E9b_E10a	KnownJunction	0	238.18	314.55	266.57	372.15	172.90	223.22	450.04
100	I9	Intron	1	20.49	58.22	49.34	33.64	28.27	25.31	48.92
101	I9_AR1	ActiveIntronRegion	1	20.61	58.56	49.62	33.82	28.44	25.46	49.21
102	E10_Aa	NovelBoundary	1	15.71	54.93	45.32	46.27	20.96	37.12	46.91
103	ER10a	ExonRegion	0	0.00	0.01	0.11	0.06	0.53	0.16	0.05
104	E10_Da	NovelBoundary	1	1.27	12.35	12.30	5.77	3.18	17.53	18.17
105	E10a_E11a	KnownJunction	1	28.54	181.77	30.71	231.85	49.61	135.90	111.11
106	I10	Intron	1	1.14	8.95	7.19	9.64	2.59	8.52	8.64
107	I10_AR1	ActiveIntronRegion	1	1.15	9.03	7.25	9.74	2.61	8.59	8.72
108	E11_Aa	NovelBoundary	1	4.56	10.80	10.50	13.41	0.00	1.58	6.94
109	ER11a	ExonRegion	0	6.73	2.76	5.14	1.82	31.20	3.49	1.94
110	ER11b	ExonRegion	0	0.77	0.00	0.00	0.00	0.81	0.00	0.00
111	IG41_SR3	SilentIntergenicRegion	0	1.99	3.53	7.96	10.80	1.61	3.99	2.41
112	IG41_AR2	ActiveIntergenicRegion	0	4.40	5.19	11.95	9.07	0.81	4.12	1.59
113	IG41_AR1	ActiveIntergenicRegion	0	0.71	2.56	5.49	8.64	0.17	8.93	0.92