Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	TYMP	Gene	0	320.15	271.31	174.65	52.80	0.67	212.33	25.37
2	395678	Transcript	0	9.19	3.60	3.71	0.00	0.00	5.27	0.48
3	252029	Transcript	0	0	0	0	0	0	0	0
4	395681	Transcript	0	1.08	9.72	0.38	2.63	0.00	6.72	0.50
5	395680	Transcript	0	10.40	15.41	6.01	2.81	0.00	11.90	0.73
6	ER1a	ExonRegion	0	11.75	3.47	2.42	0.00	0.00	4.03	0.96
7	E1_Ad	KnownBoundary	0	106.15	38.20	51.98	9.18	0.00	38.46	3.87
8	ER1b	ExonRegion	0	22.77	6.74	4.68	2.15	0.00	9.36	1.78
9	ER1c	ExonRegion	0	60.42	24.98	22.52	5.69	0.00	21.91	2.87
10	ER1d	ExonRegion	0	249.82	162.39	107.85	34.10	0.44	167.25	16.44
11	E1a_E2a	KnownJunction	0	0.92	0.00	0.62	0.00	0.00	0.00	0.00
12	E1a_E2b	KnownJunction	0	6.64	3.73	5.00	0.00	0.00	6.51	0.00
13	E1a_E2c	KnownJunction	0	71.17	36.31	35.55	8.53	0.00	17.74	2.46
14	E1a_E5a	NovelJunction	1	0.00	2.36	0.00	0.00	0.00	17.58	0.56
15	E2_Aa	NovelBoundary	0	80.13	66.41	41.06	11.92	1.11	67.16	5.32
16	ER2a	ExonRegion	0	19.88	30.83	11.40	5.61	0.00	23.80	1.46
17	E2_Ac	KnownBoundary	0	63.72	67.57	33.09	11.73	0.00	57.03	2.51
18	ER2b	ExonRegion	0	46.68	57.71	25.57	10.81	0.07	46.38	2.64
19	ER2c	ExonRegion	0	345.40	294.04	194.45	54.50	0.53	207.05	20.26
20	E2_Da	NovelBoundary	0	44.40	82.76	33.34	28.23	0.00	82.73	2.94
21	E2a_E3a	KnownJunction	0	473.51	312.03	276.89	55.48	0.00	213.41	30.31
22	E2a_E5a	NovelJunction	0	0.00	4.54	0.00	0.00	0.00	9.33	0.00
23	I2	Intron	0	26.31	46.68	24.55	9.61	0.26	53.76	0.98
24	I2_AR1	ActiveIntronRegion	0	26.63	47.18	24.84	9.72	0.27	54.38	0.99
25	E3_Aa	NovelBoundary	0	53.81	96.44	46.26	20.86	1.18	93.05	3.20
26	ER3a	ExonRegion	0	568.22	472.84	351.60	96.22	1.20	352.53	43.77
27	E3_Da	NovelBoundary	0	58.45	133.43	33.90	42.59	0.00	139.44	1.66
28	E3a_E4a	KnownJunction	0	749.18	446.98	412.43	111.53	0.00	348.45	49.77
29	E3a_E5a	NovelJunction	0	4.06	14.53	0.68	1.49	0.00	10.53	0.73
30	I3	Intron	0	52.31	61.80	37.28	14.03	0.60	53.35	1.40
31	I3_AR1	ActiveIntronRegion	0	52.52	62.01	37.43	14.09	0.60	53.55	1.41
32	E4_Aa	NovelBoundary	1	77.86	75.50	47.59	9.92	0.90	81.12	0.00
33	ER4a	ExonRegion	0	715.24	480.11	434.58	88.82	1.28	337.86	61.05
34	E4_Da	NovelBoundary	1	110.09	95.84	52.93	18.26	1.18	84.31	1.85
35	E4a_E5a	KnownJunction	0	739.18	445.01	435.79	64.37	0.00	336.18	55.12
36	I4	Intron	1	80.77	45.95	45.81	11.38	1.12	43.59	1.19
37	I4_AR1	ActiveIntronRegion	1	81.37	46.29	46.14	11.47	1.13	43.92	1.20
38	E5_Aa	NovelBoundary	0	115.46	82.52	98.48	20.81	0.00	98.70	6.55
39	ER5a	ExonRegion	0	622.32	493.39	370.70	84.69	0.93	372.66	55.34
40	E5_Da	NovelBoundary	1	98.45	132.99	53.83	20.78	0.95	107.47	1.62
41	E5a_E6a	KnownJunction	0	524.36	327.74	265.54	59.11	0.00	272.47	40.93
42	E5a_E7a	NovelJunction	1	14.50	29.61	13.39	4.28	0.00	48.70	1.53
43	I5	Intron	1	84.04	78.77	55.59	16.48	0.68	78.90	1.68
44	I5_AR1	ActiveIntronRegion	0	84.54	79.26	55.94	16.58	0.68	79.39	1.69
45	E6_Aa	NovelBoundary	1	88.27	54.28	47.09	12.71	0.00	72.95	0.89
46	ER6a	ExonRegion	0	494.98	309.85	233.34	62.19	0.74	276.96	37.64
47	E6a_E7a	KnownJunction	0	421.92	272.86	169.28	44.38	0.95	238.84	34.67
48	ER7a	ExonRegion	0	294.76	251.15	139.07	49.35	0.45	218.13	24.89
49	E7a_E8a	KnownJunction	0	320.15	254.52	149.12	40.77	2.10	215.15	29.75
50	ER8a	ExonRegion	0	167.54	209.11	72.20	40.76	1.25	179.19	15.08
51	E8a_E9a	KnownJunction	0	0.00	3.65	0.00	1.68	0.00	2.95	0.79
52	E8a_E9b	KnownJunction	1	76.34	183.69	28.78	41.10	0.00	157.69	11.35
53	ER9a	ExonRegion	0	2.16	15.79	0.76	3.59	0.00	10.50	0.21
54	ER9b	ExonRegion	0	70.28	141.97	22.11	35.23	0.00	101.49	5.22
55	E9a_E10a	KnownJunction	0	88.61	117.28	25.39	25.79	0.00	87.72	5.80
56	ER10a	ExonRegion	0	27.34	76.25	10.91	15.19	0.00	62.56	5.63
57	ER10b	ExonRegion	0	8.45	6.99	3.22	1.25	0.00	4.60	0.67
58	IG50	Intergenic	0	2.90	3.13	1.04	4.51	0.00	12.01	0.33
59	IG50_SR1	SilentIntergenicRegion	0	2.94	3.16	1.05	4.57	0.00	12.15	0.33