Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SFI1	Gene	0	33.65	26.71	16.31	11.64	33.36	7.36	24.09
2	382162	Transcript	0	0	0	0	0	0	0	0
3	357852	Transcript	0	11.83	11.90	4.76	7.12	28.54	0.00	8.58
4	400289	Transcript	0	8.27	4.25	4.25	2.10	5.48	0.95	4.21
5	400288	Transcript	0	4.39	1.82	2.95	1.43	2.72	0.79	1.78
6	ER1a	ExonRegion	0	3.24	4.23	3.08	1.35	1.36	1.57	1.59
7	E1_Ab	KnownBoundary	0	15.57	9.72	5.16	7.83	7.49	2.20	7.28
8	ER1b	ExonRegion	0	23.59	18.53	7.81	7.76	11.81	11.15	14.66
9	E1a_E2a	KnownJunction	0	10.61	23.07	10.07	3.96	0.88	4.37	6.48
10	E1a_E2b	KnownJunction	0	2.47	0.00	2.90	0.00	1.15	0.00	0.00
11	ER2a	ExonRegion	1	14.45	22.11	11.38	3.74	3.56	5.64	5.40
12	ER2b	ExonRegion	0	55.29	37.15	29.57	11.83	32.47	15.50	33.52
13	E2a_E3a	KnownJunction	0	62.87	26.25	25.32	5.80	40.18	10.08	31.77
14	E2a_E6b	KnownJunction	0	20.04	10.32	8.51	6.31	12.06	2.84	11.28
15	ER3a	ExonRegion	0	48.12	28.30	26.46	11.76	37.29	7.19	23.77
16	E3a_E4a	KnownJunction	1	42.58	16.03	15.52	2.60	22.43	6.75	9.65
17	E3a_E6b	NovelJunction	0	25.64	19.28	13.92	4.36	23.42	5.65	13.00
18	E4_Aa	NovelBoundary	1	27.30	1.42	6.54	1.63	1.18	3.00	3.04
19	ER4a	ExonRegion	1	54.87	13.94	23.15	5.09	23.82	6.88	10.08
20	E4a_E6b	KnownJunction	1	42.38	9.64	20.59	7.42	18.65	7.10	9.32
21	ER5a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	ER6a	ExonRegion	0	8.78	3.64	5.90	2.85	5.44	1.58	3.57
23	ER6b	ExonRegion	0	56.66	28.64	25.78	14.23	64.54	10.67	33.69
24	E6a_E7a	KnownJunction	0	52.44	26.69	18.52	16.82	66.71	2.92	35.97
25	ER7a	ExonRegion	0	50.72	39.13	28.31	14.62	64.33	9.80	42.48
26	E7a_E8a	KnownJunction	0	36.50	36.04	31.33	14.93	50.30	10.56	38.34
27	ER8a	ExonRegion	0	43.51	38.32	20.33	17.73	58.36	5.35	37.11
28	E8_Da	NovelBoundary	0	8.48	8.59	2.67	2.60	8.48	1.66	5.78
29	E8a_E9a	KnownJunction	1	40.74	26.85	11.93	4.31	61.57	4.29	33.35
30	ER9a	ExonRegion	1	36.75	35.29	15.34	6.39	54.45	5.98	36.59
31	E9a_E10a	KnownJunction	0	41.57	30.95	19.13	10.13	60.19	0.00	27.20
32	ER10a	ExonRegion	0	62.14	39.43	31.73	13.45	68.05	8.25	33.37
33	E10a_E11a	KnownJunction	0	78.51	46.76	34.09	11.65	81.10	5.47	36.89
34	ER11a	ExonRegion	0	58.35	38.52	25.27	9.68	54.51	5.31	34.01
35	E11_Da	NovelBoundary	0	14.60	5.65	5.81	7.50	5.12	5.98	7.44
36	E11a_E12a	KnownJunction	0	57.26	24.41	21.00	12.25	34.49	1.23	25.77
37	I11_AR3	ActiveIntronRegion	0	8.32	6.58	5.73	9.51	5.61	5.72	5.63
38	E12_Aa	NovelBoundary	0	11.13	3.05	4.61	9.40	3.53	13.37	5.16
39	ER12a	ExonRegion	1	85.78	28.80	18.23	15.61	77.45	3.90	34.06
40	E12_Da	NovelBoundary	0	5.39	5.70	2.60	9.21	4.43	2.52	3.02
41	E12a_E13a	KnownJunction	1	87.19	20.05	14.86	7.23	60.51	4.29	31.70
42	E12a_E14a	KnownJunction	0	11.83	11.90	4.76	7.12	28.54	0.00	8.58
43	E13_Aa	NovelBoundary	0	12.75	7.36	12.16	13.25	4.45	6.35	10.07
44	ER13a	ExonRegion	1	82.69	27.84	18.44	11.65	48.85	8.71	29.12
45	E13a_E14a	KnownJunction	1	77.54	26.51	24.19	15.39	46.01	16.43	24.39
46	E14_Aa	NovelBoundary	0	5.09	1.63	2.11	9.27	0.99	1.37	4.14
47	ER14a	ExonRegion	0	94.47	46.96	39.07	20.91	68.38	13.22	38.84
48	E14a_E15a	KnownJunction	0	72.02	43.87	37.52	18.39	68.70	11.66	40.82
49	I14	Intron	0	4.89	5.40	3.40	8.73	0.08	4.00	1.49
50	I14_SR1	SilentIntronRegion	0	4.90	5.41	3.41	8.75	0.08	4.00	1.50
51	E15_Aa	NovelBoundary	1	5.86	1.13	1.39	15.77	0.00	1.18	1.43
52	ER15a	ExonRegion	0	51.12	36.57	20.11	14.14	47.00	12.92	29.97
53	E15_Da	NovelBoundary	0	0.62	3.52	2.16	10.73	2.21	1.61	5.14
54	E15a_E16a	KnownJunction	0	44.06	35.28	15.59	14.25	38.75	9.67	20.11
55	ER16a	ExonRegion	0	46.41	31.50	25.50	14.60	52.73	9.35	34.54
56	E16a_E17a	KnownJunction	0	33.61	13.45	20.79	11.57	47.30	3.86	29.95
57	ER17a	ExonRegion	0	31.73	20.45	18.47	12.88	26.00	2.06	27.26
58	E17_Da	NovelBoundary	0	6.14	6.12	6.16	1.68	0.00	6.54	8.15
59	E17a_E18a	KnownJunction	0	33.76	20.10	11.25	8.61	32.71	0.00	23.12
60	E18_Aa	NovelBoundary	1	1.99	7.59	9.36	7.59	2.14	17.29	1.36
61	ER18a	ExonRegion	0	20.19	21.30	9.65	11.14	25.23	7.55	20.83
62	E18_Da	NovelBoundary	0	6.34	2.68	5.55	8.91	1.18	2.92	1.39
63	E18a_E19a	KnownJunction	0	19.36	12.98	5.20	6.72	29.44	3.27	14.82
64	I18_SR1	SilentIntronRegion	0	4.59	6.83	6.54	8.70	2.88	6.35	3.38
65	E19_Aa	NovelBoundary	0	2.72	7.88	1.61	9.73	1.89	3.38	0.82
66	ER19a	ExonRegion	1	12.14	18.89	2.23	6.15	21.94	5.21	10.47
67	E19_Da	NovelBoundary	0	3.74	11.09	9.96	11.97	3.27	10.05	5.25
68	E19a_E20a	KnownJunction	1	9.91	17.76	4.38	0.00	15.68	5.28	18.14
69	I19	Intron	0	12.42	10.56	13.18	13.32	6.06	7.05	6.91
70	I19_SR1	SilentIntronRegion	0	15.34	10.85	17.06	14.84	6.27	8.14	6.47
71	I19_AR1	ActiveIntronRegion	1	7.80	10.19	6.98	10.97	5.79	5.34	7.69
72	ER20a	ExonRegion	0	13.99	23.79	8.84	8.72	27.64	2.02	18.84
73	E20_Da	NovelBoundary	1	0.72	10.38	3.15	9.86	3.32	4.02	7.42
74	E20a_E21a	KnownJunction	0	21.18	18.50	10.48	13.92	27.32	4.15	16.17
75	I20	Intron	0	3.69	6.37	4.94	10.37	2.57	5.59	4.85
76	I20_AR1	ActiveIntronRegion	0	3.70	6.40	4.96	10.41	2.58	5.61	4.86
77	E21_Aa	NovelBoundary	0	2.97	5.41	1.48	12.87	4.24	3.83	7.52
78	ER21a	ExonRegion	0	24.99	22.80	8.39	10.66	34.18	5.27	19.27
79	E21_Da	NovelBoundary	0	7.23	5.10	1.49	10.05	2.14	1.66	5.53
80	E21a_E22a	KnownJunction	0	23.40	36.54	13.11	9.59	46.15	1.50	22.49
81	I21	Intron	0	7.94	9.14	7.43	7.55	10.34	5.45	7.45
82	I21_AR1	ActiveIntronRegion	1	7.95	9.16	7.44	7.56	10.36	5.46	7.46
83	E22_Aa	NovelBoundary	0	6.36	7.04	6.01	12.35	14.52	4.58	4.53
84	ER22a	ExonRegion	0	38.53	26.62	19.89	15.44	44.43	7.83	29.81
85	E22_Da	NovelBoundary	0	14.20	11.80	10.19	5.80	11.96	9.73	5.00
86	E22a_E23a	KnownJunction	0	24.03	17.13	12.03	10.57	41.93	5.92	26.76
87	I22	Intron	0	7.54	5.18	7.16	8.92	9.48	6.51	5.40
88	I22_AR1	ActiveIntronRegion	0	12.52	7.43	7.52	11.80	11.57	7.47	5.55
89	I22_SR1	SilentIntronRegion	0	4.90	2.60	7.82	7.67	10.34	7.08	6.40
90	E23_Aa	NovelBoundary	0	9.76	17.44	3.58	12.30	6.20	12.01	7.14
91	ER23a	ExonRegion	0	21.67	27.15	16.92	15.98	33.94	4.51	30.10
92	E23_Da	NovelBoundary	0	2.44	15.21	7.52	12.98	5.09	1.58	5.10
93	E23a_E24a	KnownJunction	0	22.70	28.37	19.74	12.38	47.14	0.00	27.01
94	E24_Aa	NovelBoundary	1	7.63	7.12	12.55	8.32	2.35	12.33	2.87
95	ER24a	ExonRegion	0	26.04	33.94	14.48	14.81	38.60	6.87	32.39
96	E24_Da	NovelBoundary	0	3.35	8.33	9.86	2.71	5.53	6.41	4.70
97	E24a_E25a	KnownJunction	0	20.48	28.74	13.31	10.78	34.14	0.00	29.45
98	I24	Intron	0	4.31	3.77	6.18	9.83	4.18	5.02	4.97
99	I24_AR1	ActiveIntronRegion	0	4.32	3.79	6.21	9.88	4.20	5.05	4.99
100	E25_Aa	NovelBoundary	1	2.32	4.81	2.73	1.35	2.28	1.13	8.93
101	ER25a	ExonRegion	0	15.25	26.01	6.50	11.67	23.39	6.39	19.04
102	E25_Da	NovelBoundary	0	10.03	5.57	11.25	2.76	6.34	9.27	3.77
103	E25a_E26a	KnownJunction	1	10.38	12.74	0.62	5.69	10.19	6.14	12.28
104	I25	Intron	0	13.51	8.19	11.59	8.13	8.41	3.03	7.21
105	I25_AR1	ActiveIntronRegion	0	8.52	6.63	8.27	4.19	7.86	4.84	6.15
106	I25_SR1	SilentIntronRegion	0	10.38	4.00	9.12	7.49	8.32	1.35	3.82
107	I25_AR2	ActiveIntronRegion	0	16.31	9.84	13.55	9.89	8.69	2.71	8.46
108	E26_Aa	NovelBoundary	0	11.75	8.62	8.19	9.10	5.72	2.73	8.23
109	ER26a	ExonRegion	0	14.99	22.63	6.68	11.56	20.79	2.16	16.19
110	E26_Da	NovelBoundary	0	5.16	8.46	7.36	12.84	3.02	2.92	9.03
111	E26a_E27a	KnownJunction	0	15.66	27.95	10.55	6.42	15.54	0.00	18.17
112	E27_Aa	NovelBoundary	0	4.66	7.83	4.94	6.72	4.01	1.66	7.87
113	ER27a	ExonRegion	0	14.21	21.28	7.28	8.31	16.00	4.28	16.90
114	E27a_E28a	KnownJunction	0	12.63	13.00	11.14	3.14	19.02	1.18	20.31
115	E28_Aa	NovelBoundary	0	4.76	5.67	3.72	11.46	2.24	7.21	4.74
116	ER28a	ExonRegion	0	27.17	27.02	15.89	18.87	26.40	9.80	27.67
117	E28_Da	NovelBoundary	0	17.27	17.23	11.93	16.42	8.78	5.39	14.55
118	E28a_E29a	KnownJunction	1	18.26	20.54	6.50	7.91	26.40	10.21	25.75
119	I28	Intron	0	17.08	11.94	14.25	8.60	14.03	3.02	9.54
120	I28_AR1	ActiveIntronRegion	0	17.12	11.97	14.29	8.62	14.07	3.03	9.57
121	E29_Aa	NovelBoundary	1	3.44	5.10	7.23	12.68	9.82	1.29	9.77
122	ER29a	ExonRegion	0	14.57	21.09	6.97	7.17	19.93	3.93	16.94
123	E29a_E30a	KnownJunction	0	15.97	28.92	6.52	9.40	21.14	0.00	21.15
124	ER30a	ExonRegion	0	17.44	22.69	13.61	9.02	19.23	6.08	24.23
125	E30a_E31a	KnownJunction	0	12.82	16.97	12.69	3.96	11.64	6.22	17.28
126	I30	Intron	0	6.96	9.42	7.57	8.08	1.22	5.18	5.29
127	I30_SR1	SilentIntronRegion	0	6.98	9.44	7.58	8.10	1.22	5.19	5.30
128	ER31a	ExonRegion	0	23.72	27.29	15.50	14.52	21.06	9.48	22.59
129	E31a_E32a	KnownJunction	1	26.94	30.24	6.42	8.34	16.53	2.89	22.21
130	E32_Aa	NovelBoundary	1	4.67	8.67	10.82	7.12	2.10	9.49	1.73
131	ER32a	ExonRegion	0	24.02	28.96	10.59	8.07	29.05	11.95	22.24
132	E32_Da	NovelBoundary	0	10.60	10.46	13.65	13.63	0.00	4.07	6.09
133	E32a_E33a	KnownJunction	0	18.74	18.57	7.89	12.81	23.19	14.26	13.96
134	I32	Intron	0	8.30	7.73	7.95	5.12	2.67	2.52	4.01
135	I32_SR1	SilentIntronRegion	0	8.08	6.71	10.76	4.24	2.64	2.09	5.58
136	I32_AR1	ActiveIntronRegion	0	8.57	8.75	5.37	5.99	2.71	2.95	2.56
137	E33_Aa	NovelBoundary	0	8.46	18.36	3.61	10.59	1.18	3.00	3.65
138	ER33a	ExonRegion	0	27.98	28.76	12.99	14.16	22.68	10.13	16.93
139	E33a_E34a	KnownJunction	0	25.07	31.71	12.44	10.35	24.74	14.74	16.70
140	ER34a	ExonRegion	0	18.67	23.66	12.62	12.23	12.64	11.03	11.81
141	ER34b	ExonRegion	0	2.31	2.43	1.35	0.00	3.24	0.00	1.35