Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CHEK2	Gene	0	14.89	4.15	19.54	8.23	217.05	9.75	23.45
2	398017	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	382556	Transcript	0	0.00	0.00	0.80	0.00	4.09	0.00	0.03
4	398021	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	348295	Transcript	0	0	0	0	0	0	0	0
6	382565	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	382566	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	328354	Transcript	0	0	0	0	0	0	0	0
9	382580	Transcript	0	1.42	0.00	1.87	1.63	13.52	0.24	2.39
10	382578	Transcript	0	0	0	0	0	0	0	0
11	405598	Transcript	0	0.63	0.00	2.33	0.21	10.00	0.00	1.81
12	403642	Transcript	0	0	0	0	0	0	0	0
13	402731	Transcript	0	0	0	0	0	0	0	0
14	404276	Transcript	0	0	0	0	0	0	0	0
15	382563	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	ER1a	ExonRegion	0	0.57	1.63	1.66	0.86	21.06	0.21	7.02
17	E1_Ab	KnownBoundary	1	4.06	3.36	7.31	1.44	32.90	1.66	15.99
18	E1a_E2a	KnownJunction	0	0.00	0.00	1.68	0.00	14.27	0.00	3.54
19	E1a_E3a	KnownJunction	1	6.89	10.85	9.92	6.26	525.90	12.11	39.10
20	E1a_E5a	NovelJunction	0	3.96	0.00	3.28	0.00	61.21	0.00	1.59
21	ER1b	ExonRegion	1	4.44	7.92	9.70	4.67	341.05	3.64	30.44
22	ER2a	ExonRegion	0	1.90	0.00	3.54	0.62	15.72	0.00	1.28
23	E2a_E3a	KnownJunction	0	0.00	0.00	1.75	0.00	0.00	0.00	0.62
24	E3_Ab	NovelBoundary	1	2.79	2.99	3.35	4.12	62.96	4.07	14.45
25	ER3a	ExonRegion	1	4.61	8.68	9.19	5.70	412.79	4.90	31.03
26	ER3b	ExonRegion	1	6.29	6.95	8.40	6.66	113.35	9.51	23.29
27	E3_Da	KnownBoundary	1	3.81	10.25	10.71	7.12	368.38	9.65	21.64
28	E3a_E17b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	E3a_E20a	NovelJunction	1	3.81	10.25	11.01	7.12	371.36	9.65	22.29
30	ER3c	ExonRegion	0	6.91	6.55	11.67	7.00	275.10	7.21	21.28
31	E3b_E4a	KnownJunction	0	0.80	0.00	1.48	3.90	13.79	0.00	4.17
32	E3b_E5a	KnownJunction	0	8.11	1.63	19.77	4.33	191.27	5.79	23.10
33	E3b_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	E3b_E20a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	ER4a	ExonRegion	0	1.61	0.00	2.15	1.00	15.11	0.72	2.34
36	E4a_E5a	KnownJunction	0	1.85	0.00	1.97	0.00	11.66	0.00	0.66
37	ER5a	ExonRegion	0	18.45	1.53	30.01	8.41	272.48	6.77	29.24
38	E5_Da	KnownBoundary	0	21.16	2.15	35.37	12.90	324.86	4.45	28.94
39	ER5b	ExonRegion	0	19.85	1.60	36.83	9.73	275.16	2.94	28.39
40	E5b_E7a	KnownJunction	0	20.90	2.92	36.90	11.24	243.76	5.52	24.41
41	E5b_E8a	KnownJunction	0	0.00	0.00	1.81	0.00	6.50	0.00	0.00
42	ER5c	ExonRegion	0	19.47	2.43	38.91	13.58	248.44	3.68	25.93
43	ER6a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	ER7a	ExonRegion	1	28.17	2.22	36.34	11.97	369.82	3.03	30.27
45	E7a_E9a	KnownJunction	0	30.13	1.18	39.39	9.05	502.09	0.00	28.55
46	ER8a	ExonRegion	0	0.00	0.00	0.59	0.00	4.90	0.00	0.09
47	ER9a	ExonRegion	1	34.96	3.95	42.09	11.24	499.32	0.85	28.04
48	E9a_E10a	KnownJunction	1	41.72	5.33	29.19	16.07	500.57	3.08	32.78
49	ER10a	ExonRegion	0	31.32	9.77	32.04	15.94	381.27	21.70	32.95
50	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
51	ER11a	ExonRegion	0	28.84	8.23	29.87	10.48	428.38	14.87	36.57
52	E11a_E14a	KnownJunction	1	20.16	5.91	22.22	3.17	385.21	16.27	29.48
53	E11a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
54	ER12a	ExonRegion	0	0.00	0.00	0.00	0.00	0.87	0.00	0.00
55	ER13a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
56	ER14a	ExonRegion	0	19.47	2.59	28.88	7.68	318.31	14.14	33.10
57	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
58	ER15a	ExonRegion	0	18.07	5.45	27.39	7.92	287.68	13.41	32.30
59	E15a_E16a	KnownJunction	0	13.50	1.16	19.27	10.48	195.53	2.52	32.79
60	E15a_E17a	KnownJunction	0	2.49	0.00	2.62	2.71	16.99	1.15	3.02
61	ER16a	ExonRegion	0	15.55	3.66	23.54	10.35	229.08	11.50	35.55
62	E16a_E17a	KnownJunction	0	13.19	1.52	20.02	9.70	227.16	11.15	32.49
63	ER17a	ExonRegion	0	17.76	3.67	18.73	10.22	293.62	14.61	31.93
64	E17_Ab	KnownBoundary	0	22.92	4.94	16.96	7.83	257.62	14.58	24.23
65	ER17b	ExonRegion	0	21.84	7.08	26.16	11.06	299.73	18.79	27.70
66	E17a_E18a	KnownJunction	0	21.40	7.70	30.75	13.57	286.75	28.27	30.33
67	ER18a	ExonRegion	0	24.26	10.38	30.97	14.95	308.45	21.36	38.27
68	E18a_E19a	KnownJunction	0	22.11	8.67	27.46	15.77	240.21	20.98	41.95
69	ER19a	ExonRegion	0	23.71	7.16	34.29	17.88	265.69	21.60	37.39
70	E19a_E21a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
71	E20a_E21a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
72	ER20a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
73	ER21a	ExonRegion	0	14.70	3.21	19.47	13.76	260.54	15.33	32.72
74	E21a_E22a	KnownJunction	0	6.38	3.02	11.41	13.76	152.61	21.12	20.47
75	ER22a	ExonRegion	1	13.50	1.31	13.25	6.08	85.27	17.27	18.50
76	E22_Da	KnownBoundary	0	10.11	0.00	13.03	8.40	99.63	7.13	22.54
77	ER22b	ExonRegion	0	5.05	1.31	8.08	4.27	59.49	7.85	10.20
78	ER22c	ExonRegion	0	4.10	0.40	6.28	1.25	38.87	4.29	7.80
79	ER22d	ExonRegion	0	0.77	0.00	2.03	0.00	16.20	2.45	4.05