Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MTMR3	Gene	0	82.23	135.33	93.55	190.78	40.49	120.63	55.19
2	333027	Transcript	0	0	0	0	0	0	0	0
3	401950	Transcript	0	0	0	0	0	0	0	0
4	323630	Transcript	0	11.03	16.03	6.80	23.11	1.98	6.51	2.64
5	351488	Transcript	0	0	0	0	0	0	0	0
6	406629	Transcript	0	0	0	0	0	0	0	0
7	ER1a	ExonRegion	0	0.82	1.54	1.29	3.41	0.94	2.57	1.28
8	E1_Ac	KnownBoundary	0	15.81	15.53	20.95	21.02	11.83	14.42	9.33
9	ER1b	ExonRegion	0	4.56	9.23	8.85	11.64	7.40	10.46	5.85
10	ER1c	ExonRegion	0	9.82	33.48	10.17	61.38	4.75	35.60	6.94
11	E1a_E2a	KnownJunction	0	14.82	62.71	14.03	98.18	5.35	68.55	17.33
12	ER2a	ExonRegion	0	41.03	90.86	46.97	145.94	5.18	73.26	27.10
13	E2a_E3a	KnownJunction	1	49.40	91.19	74.64	148.38	8.44	61.43	22.33
14	E2a_E4a	KnownJunction	0	11.03	16.03	6.80	23.11	1.98	6.51	2.64
15	I2_AR1	ActiveIntronRegion	0	18.00	5.04	13.23	4.25	2.02	5.74	2.94
16	ER3a	ExonRegion	0	42.29	99.33	71.34	161.17	25.93	88.00	29.29
17	E3a_E4a	KnownJunction	0	26.19	88.74	34.55	115.98	25.93	76.06	28.25
18	ER3b	ExonRegion	0	27.10	95.75	42.80	135.81	28.79	88.61	31.22
19	I3	Intron	0	29.78	10.39	23.79	15.57	5.21	5.08	5.01
20	I3_AR1	ActiveIntronRegion	0	25.07	11.21	23.22	24.29	3.65	10.45	4.35
21	I3_SR2	SilentIntronRegion	0	16.87	11.49	20.50	21.10	5.19	8.86	6.48
22	I3_AR2	ActiveIntronRegion	0	19.99	6.71	20.72	8.25	3.92	6.89	5.44
23	I3_AR3	ActiveIntronRegion	0	35.20	8.62	36.06	14.49	7.94	6.31	12.66
24	I3_AR4	ActiveIntronRegion	0	37.84	12.55	38.09	16.00	7.75	5.50	10.89
25	I3_AR5	ActiveIntronRegion	0	44.61	19.15	43.59	18.56	4.48	5.70	9.52
26	I3_AR6	ActiveIntronRegion	0	39.19	16.49	39.09	18.70	5.09	4.90	7.42
27	I3_SR3	SilentIntronRegion	0	25.76	9.67	23.30	11.35	7.18	3.04	6.11
28	I3_AR7	ActiveIntronRegion	1	59.11	18.11	35.87	21.77	10.63	4.83	6.85
29	I3_SR4	SilentIntronRegion	0	36.40	7.79	24.12	14.47	4.61	3.23	4.01
30	I3_AR8	ActiveIntronRegion	0	29.04	9.17	24.08	10.15	3.75	4.53	5.45
31	I3_AR9	ActiveIntronRegion	0	22.28	9.47	20.58	9.34	3.25	2.57	3.64
32	E4_Aa	NovelBoundary	0	38.20	23.62	32.78	13.76	4.17	10.83	9.26
33	ER4a	ExonRegion	0	52.99	165.95	72.38	202.67	27.57	112.06	48.68
34	E4a_E5a	KnownJunction	0	62.77	185.45	92.86	247.88	50.69	160.26	53.11
35	ER5a	ExonRegion	0	83.12	201.76	109.33	244.27	41.26	141.82	64.19
36	E5a_E6a	KnownJunction	0	85.44	189.68	119.03	247.59	44.86	158.87	64.39
37	E5a_E7a	NovelJunction	0	3.76	9.14	2.37	12.73	0.00	11.07	2.19
38	ER6a	ExonRegion	0	119.39	218.59	137.19	284.76	41.45	159.14	70.55
39	E6a_E7a	KnownJunction	0	157.57	235.13	143.56	301.28	52.05	161.17	86.72
40	ER7a	ExonRegion	0	175.99	239.00	173.50	329.94	63.53	192.79	80.81
41	E7a_E8a	KnownJunction	1	216.79	213.64	192.26	338.56	50.85	182.37	73.89
42	ER8a	ExonRegion	0	186.38	235.91	194.54	314.40	66.83	170.38	74.64
43	E8_Da	NovelBoundary	1	30.79	19.18	13.31	7.48	8.94	1.31	3.12
44	E8a_E9a	KnownJunction	0	141.28	198.03	166.85	281.18	72.27	176.13	59.72
45	ER9a	ExonRegion	0	161.78	227.97	162.11	306.84	63.49	144.68	77.37
46	E9a_E10a	KnownJunction	0	118.15	225.12	122.38	277.44	51.94	135.20	69.48
47	E9a_E11a	NovelJunction	0	9.71	6.07	4.44	16.66	0.00	9.17	0.00
48	E10_Aa	NovelBoundary	1	40.06	0.00	43.74	0.00	0.00	0.00	0.86
49	ER10a	ExonRegion	0	92.85	202.00	113.47	239.20	55.34	112.01	68.91
50	E10a_E11a	KnownJunction	0	95.50	217.26	140.05	252.90	49.75	126.63	74.06
51	ER11a	ExonRegion	0	102.62	213.10	138.96	283.29	52.58	145.79	76.57
52	E11a_E12a	KnownJunction	0	121.29	190.15	141.78	265.79	65.68	149.65	58.27
53	E12_Aa	NovelBoundary	1	52.16	3.10	62.15	0.00	5.88	1.50	0.00
54	ER12a	ExonRegion	0	121.43	208.40	150.45	269.13	58.69	169.24	80.16
55	E12a_E13a	KnownJunction	0	73.45	193.94	129.75	283.43	33.63	139.65	74.49
56	ER13a	ExonRegion	0	142.77	194.58	134.53	262.90	60.74	146.55	70.64
57	E13a_E14a	KnownJunction	1	252.59	204.44	166.77	274.62	84.44	135.58	71.43
58	E13a_E15a	NovelJunction	0	4.71	1.23	0.00	9.56	0.00	2.14	1.38
59	ER14a	ExonRegion	0	232.94	288.21	200.59	397.14	88.90	233.68	106.07
60	E14a_E15a	KnownJunction	0	268.57	299.73	209.69	452.91	124.21	263.47	140.32
61	ER15a	ExonRegion	0	166.90	313.88	182.45	436.43	93.74	237.52	159.30
62	E15_Da	NovelBoundary	1	22.16	49.52	25.94	16.93	14.78	19.14	5.76
63	E15a_E16a	KnownJunction	0	69.00	187.68	96.20	291.53	29.76	124.30	89.23
64	E15a_E17a	NovelJunction	1	0.00	0.00	1.31	19.32	0.00	7.05	1.52
65	I15	Intron	1	27.17	35.68	26.09	17.35	7.15	13.41	6.79
66	I15_AR1	ActiveIntronRegion	1	27.21	35.74	26.13	17.37	7.17	13.43	6.80
67	ER16a	ExonRegion	0	84.28	215.51	99.16	303.69	50.98	158.36	122.48
68	E16a_E17a	KnownJunction	0	41.42	120.66	71.42	164.47	28.42	71.69	44.36
69	ER17a	ExonRegion	0	85.06	213.15	115.55	290.60	44.14	174.29	70.75
70	E17a_E18a	KnownJunction	0	47.68	86.62	50.89	116.55	30.82	70.62	41.69
71	E17a_E19a	KnownJunction	0	36.90	124.19	56.78	151.76	15.19	136.89	26.76
72	I17_SR1	SilentIntronRegion	0	14.84	15.34	20.61	17.62	3.84	6.84	6.45
73	ER18a	ExonRegion	0	62.16	101.69	78.97	138.86	43.67	86.32	64.91
74	E18a_E19a	KnownJunction	0	70.75	136.48	83.99	131.47	45.28	95.86	76.99
75	ER19a	ExonRegion	0	94.34	248.87	109.53	289.67	55.37	225.21	92.57
76	E19a_E20a	KnownJunction	1	7.48	21.41	8.55	67.24	21.90	49.23	13.03
77	E19a_E21a	KnownJunction	0	83.18	210.67	97.79	249.78	36.31	108.99	60.85
78	E20a_E21a	KnownJunction	1	9.96	24.56	15.25	64.88	24.69	74.42	7.75
79	ER20a	ExonRegion	1	12.12	31.36	17.54	91.26	24.81	82.55	13.92
80	ER21a	ExonRegion	0	109.68	203.41	135.34	289.64	68.33	218.25	87.12
81	E21_Da	KnownBoundary	0	142.68	88.11	117.38	189.04	44.65	126.76	47.47
82	ER21b	ExonRegion	0	76.16	150.43	87.43	202.87	41.30	145.82	57.09
83	E21_Db	KnownBoundary	0	60.17	182.27	96.48	245.01	53.04	167.34	56.90
84	ER21c	ExonRegion	0	113.61	171.97	125.40	259.65	58.72	201.72	64.17
85	E21_Dc	KnownBoundary	0	55.13	11.74	92.49	21.51	16.18	23.24	26.40
86	ER21d	ExonRegion	0	38.52	22.04	40.23	40.04	16.78	20.25	22.89
87	IG36	Intergenic	0	16.02	6.51	16.84	24.62	1.40	12.77	5.45
88	IG36_SR1	SilentIntergenicRegion	0	12.68	6.22	17.59	18.04	1.24	7.76	5.01
89	IG36_AR1	ActiveIntergenicRegion	0	13.64	6.31	15.57	26.34	1.47	16.30	6.27
90	IG36_AR2	ActiveIntergenicRegion	0	19.37	4.84	22.40	21.85	0.62	20.76	8.42
91	IG36_SR2	SilentIntergenicRegion	0	18.17	7.05	18.03	27.67	1.55	14.55	5.93
92	IG36_AR3	ActiveIntergenicRegion	0	9.31	3.50	8.40	11.87	1.09	6.72	2.32
93	IG36_SR3	SilentIntergenicRegion	0	7.18	3.58	7.28	18.07	0.37	9.43	2.83