Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PISD	Gene	0	130.02	398.32	123.26	389.20	96.71	207.02	101.77
2	397508	Transcript	0	3.82	17.45	5.27	16.12	3.10	4.96	3.27
3	336566	Transcript	0	0.00	0.00	0.78	0.00	0.00	0.00	0.89
4	397500	Transcript	0	0.29	0.61	1.02	0.78	1.21	1.53	3.88
5	266095	Transcript	0	0	0	0	0	0	0	0
6	382151	Transcript	0	8.66	16.60	10.36	19.54	4.47	16.73	4.76
7	397503	Transcript	0	0	0	0	0	0	0	0
8	397502	Transcript	0	0	0	0	0	0	0	0
9	ER1a	ExonRegion	0	3.82	17.45	5.27	16.12	3.10	4.96	3.27
10	E1_Ab	KnownBoundary	0	60.87	188.42	60.08	153.23	45.02	50.30	29.75
11	ER1b	ExonRegion	0	131.80	447.47	115.34	461.55	147.98	208.99	79.82
12	E1a_E2a	KnownJunction	0	122.55	374.95	101.08	449.90	69.80	230.24	76.60
13	E1a_E3a	NovelJunction	1	7.71	61.71	4.74	24.87	3.04	24.74	0.00
14	ER2a	ExonRegion	0	50.69	333.80	44.38	266.85	19.03	155.82	38.66
15	E2a_E3a	KnownJunction	0	45.75	483.05	42.84	355.00	15.72	179.18	33.72
16	E3_Aa	NovelBoundary	1	43.79	5.49	23.61	1.30	0.00	0.00	1.48
17	ER3a	ExonRegion	0	123.51	466.26	118.98	465.30	99.45	263.34	80.12
18	E3a_E6a	NovelJunction	1	51.22	195.17	27.13	200.77	0.88	111.51	6.02
19	E3a_E7a	NovelJunction	0	1.82	27.37	0.76	28.07	2.35	13.27	3.17
20	E3a_E8a	KnownJunction	0	37.42	241.88	63.72	230.82	27.71	117.11	54.13
21	I3_AR1	ActiveIntronRegion	0	45.51	32.70	25.33	15.89	11.07	6.84	13.88
22	I3_AR2	ActiveIntronRegion	0	86.66	47.93	48.71	19.44	14.43	12.43	21.16
23	I3_AR3	ActiveIntronRegion	0	55.08	44.91	34.83	18.96	11.89	10.64	15.63
24	I3_SR1	SilentIntronRegion	0	35.25	18.82	22.17	12.61	8.60	5.42	8.68
25	I3_SR6	SilentIntronRegion	0	32.94	24.17	16.53	12.42	5.58	7.11	11.44
26	I3_AR11	ActiveIntronRegion	0	32.34	15.93	14.65	8.49	4.76	2.11	11.25
27	ER4a	ExonRegion	0	0.29	0.61	1.02	0.78	1.21	1.53	3.88
28	ER4b	ExonRegion	1	4.38	3.77	7.42	4.18	8.38	13.92	22.43
29	I4_AR2	ActiveIntronRegion	0	29.17	27.62	13.89	18.15	9.35	9.09	20.07
30	ER5a	ExonRegion	0	2.43	2.13	1.19	1.77	0.81	1.12	2.36
31	ER5b	ExonRegion	0	21.64	24.82	12.52	10.66	6.42	5.57	12.73
32	E5a_E6a	KnownJunction	0	11.75	5.02	2.03	3.93	3.02	4.48	4.56
33	ER6a	ExonRegion	0	60.53	152.12	34.25	127.67	13.86	84.15	39.37
34	E6_Ab	KnownBoundary	0	44.81	122.58	40.96	112.40	13.76	64.48	59.32
35	ER6b	ExonRegion	0	38.57	106.65	20.79	89.23	13.92	48.59	38.74
36	E6a_E7a	KnownJunction	1	40.47	100.72	10.73	78.65	20.26	33.79	31.13
37	E6a_E8a	NovelJunction	0	4.77	8.33	4.33	16.15	2.28	15.30	2.69
38	ER7a	ExonRegion	0	51.49	174.54	30.25	149.16	20.75	61.48	49.35
39	E7a_E8a	KnownJunction	0	46.16	199.56	25.23	180.81	21.02	72.20	59.10
40	ER8a	ExonRegion	0	88.25	484.71	107.38	429.61	90.01	210.39	113.93
41	E8a_E9a	KnownJunction	0	0.00	0.00	0.78	0.00	0.00	0.00	0.89
42	E8b_E9a	KnownJunction	0	104.73	462.11	142.14	448.14	136.33	209.09	138.33
43	ER8b	ExonRegion	0	94.52	451.93	134.57	428.96	129.04	206.38	118.50
44	E9_Aa	NovelBoundary	0	47.37	98.23	25.82	91.89	7.38	59.82	17.11
45	ER9a	ExonRegion	0	148.44	577.66	196.99	569.74	112.07	263.41	154.57
46	E9a_E10a	KnownJunction	0	118.93	541.72	159.14	496.69	92.65	255.16	126.25
47	ER10a	ExonRegion	0	139.07	559.64	167.91	558.59	143.55	270.50	147.01
48	E10a_E11a	KnownJunction	0	87.42	466.13	116.03	438.77	79.51	243.10	116.18
49	E10a_E12a	KnownJunction	1	11.18	19.78	10.85	56.40	3.76	34.01	8.57
50	ER11a	ExonRegion	0	117.49	539.44	132.11	515.69	109.72	251.92	132.79
51	E11a_E12a	KnownJunction	0	198.28	515.55	160.59	465.70	154.55	243.77	136.13
52	ER12a	ExonRegion	0	261.03	622.51	231.30	615.90	170.54	343.58	173.28
53	E12_Da	KnownBoundary	0	185.01	523.56	185.87	593.35	202.80	258.11	201.44
54	ER12b	ExonRegion	0	166.16	502.25	155.87	520.60	147.59	277.19	130.68
55	E12_Db	KnownBoundary	0	70.08	199.03	63.36	223.47	33.13	188.24	42.99
56	ER12c	ExonRegion	0	49.74	122.03	55.10	143.17	25.46	114.84	28.82
57	ER12d	ExonRegion	0	14.89	31.08	19.53	37.30	8.13	32.34	7.17